BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644789|ref|NP_206959.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(306 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Prote... 86 5e-18
pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidi... 27 3.8
pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxi... 27 3.8
pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduc... 27 3.8
pdb|1CG2|A Chain A, Carboxypeptidase G2 >gi|2780969|pdb|1CG... 27 3.8
pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From ... 26 5.0
pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopat... 26 5.0
pdb|1AH7| Phospholipase C From Bacillus Cereus 26 6.5
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 85.9 bits (211), Expect = 5e-18
Identities = 53/135 (39%), Positives = 69/135 (50%), Gaps = 6/135 (4%)
Query: 109 GDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYG 168
G V+K+L KAI YY + C L C SL N KQ + +LSK AC LN G
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL---VSNSQINKQKLFQ--YLSK-ACELNSG 57
Query: 169 ISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQAL 228
C F+G Y N K V+KDL+KA + + C L D C+ LGY G V +N +QA+
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 229 NLYKKGCYLKRGSGC 243
++K C L C
Sbjct: 118 KTFEKACRLGSEDAC 132
Score = 75.9 bits (185), Expect = 5e-15
Identities = 46/135 (34%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 73 GDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGG 132
G V +++ KA+ YY + C L C SL S Q N K Y + C L G
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
Query: 133 VSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKAL 192
C LG Y NG VK++ KA AC LN C +GY KGV K+ K+A+
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 193 ANFKRGCHLKDGASC 207
F++ C L +C
Sbjct: 118 KTFEKACRLGSEDAC 132
Score = 71.6 bits (174), Expect = 1e-13
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA+ +Y ++C L GC SL S + N K Y + C L + C L
Sbjct: 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGCRFL 63
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G YE+G V+K+L KA YY + C L C LG+ + G GV +N +A+ + A
Sbjct: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123
Query: 163 CSLNYGISCNFV 174
C L +C +
Sbjct: 124 CRLGSEDACGIL 135
Score = 69.3 bits (168), Expect = 5e-13
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 145 GTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDG 204
G VK++ KA+ AC LN C + Q + +K + C L G
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL------VSNSQINKQKLFQYLSKACELNSG 57
Query: 205 ASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAI 264
C LG YE G VK++ +A Y K C L GC + Y GKGV K+ +A+
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 265 SYYKKGCTLGFSGSCKVL 282
++K C LG +C +L
Sbjct: 118 KTFEKACRLGSEDACGIL 135
Score = 40.8 bits (94), Expect = 2e-04
Identities = 21/66 (31%), Positives = 32/66 (47%)
Query: 39 FKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLA 98
+ + D KA +Y ++C L GC LG G GV +N +AV + + C L + A
Sbjct: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
Query: 99 CASLGS 104
C L +
Sbjct: 132 CGILNN 137
>pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1QKS|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOM|B Chain B, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOM|A Chain A, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
Length = 567
Score = 26.6 bits (57), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 236 YLKRGSGCHNVAVMYYTGKGVPKDLDKAISY 266
Y +R +GCH V TGK + DL + + +
Sbjct: 61 YFERCAGCHGVLRKGATGKALTPDLTRDLGF 91
>pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ5|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ4|A Chain A, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1HJ3|A Chain A, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ3|B Chain B, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ4|B Chain B, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1DY7|B Chain B, Cytochrome Cd1 Nitrite Reductase, Co Complex
pdb|1H9X|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1HCM|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1H9X|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1HCM|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1H9Y|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1H9Y|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1DY7|A Chain A, Cytochrome Cd1 Nitrite Reductase, Co Complex
Length = 567
Score = 26.6 bits (57), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 236 YLKRGSGCHNVAVMYYTGKGVPKDLDKAISY 266
Y +R +GCH V TGK + DL + + +
Sbjct: 61 YFERCAGCHGVLRKGATGKALTPDLTRDLGF 91
>pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
pdb|1E2R|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
Length = 567
Score = 26.6 bits (57), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 236 YLKRGSGCHNVAVMYYTGKGVPKDLDKAISY 266
Y +R +GCH V TGK + DL + + +
Sbjct: 61 YFERCAGCHGVLRKGATGKALTPDLTRDLGF 91
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 26.6 bits (57), Expect = 3.8
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 250 YYTGKGVPKDLDKAISYYKK-GCTLG 274
+ G+G K +DKA++YYK+ G TLG
Sbjct: 305 FNAGEGGKKLVDKAVAYYKEAGGTLG 330
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
Length = 605
Score = 26.2 bits (56), Expect = 5.0
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 30/132 (22%)
Query: 168 GISCNFVGYMYRNAKGVQ--------KDLKKALANFK----RGCHLKDGASCVSLGYM-- 213
G++C GY+YR KG+ + + L+N+ R + DG + LG +
Sbjct: 131 GLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGA 190
Query: 214 YEVGMDVKQNGEQALNLYKKGCYLK------RGSGCHNVAVM---YYTG----KGVPKDL 260
Y +G+ V G+ AL + G K G +N+ ++ +Y G + KD
Sbjct: 191 YGIGIPV---GKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDY 247
Query: 261 DKAISYYKKGCT 272
D + + K CT
Sbjct: 248 DTLLDNFMKACT 259
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 26.2 bits (56), Expect = 5.0
Identities = 18/79 (22%), Positives = 33/79 (40%), Gaps = 11/79 (13%)
Query: 156 LFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASC-------- 207
+ +S CS +G+S VG N + L + N + GC +K +
Sbjct: 199 IVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVT 258
Query: 208 ---VSLGYMYEVGMDVKQN 223
++L + G+DV+Q+
Sbjct: 259 YQNIALTNISTYGVDVQQD 277
>pdb|1AH7| Phospholipase C From Bacillus Cereus
Length = 245
Score = 25.8 bits (55), Expect = 6.5
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 27 TGEKYFKMATQAFKRGDYHKA 47
TG KYFK+A +++K D +A
Sbjct: 89 TGAKYFKLAGESYKNKDMKQA 109
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,013,844
Number of Sequences: 13198
Number of extensions: 91262
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 14
length of query: 306
length of database: 2,899,336
effective HSP length: 88
effective length of query: 218
effective length of database: 1,737,912
effective search space: 378864816
effective search space used: 378864816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)