BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646191|ref|NP_208375.1| sialoglycoprotease (gcp)
[Helicobacter pylori 26695]
         (340 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DTW|A  Chain A, Human Branched-Chain Alpha-Keto Acid De...    26  5.7
pdb|1JY1|A  Chain A, Crystal Structure Of Human Tyrosyl-Dna ...    25  9.7

>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
          Length = 400

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 213 FSGLKNAVRLEVEKNAPNLNEAIKQKIGYHFQS 245
           ++  K A R  V +N P L EA+  +IG+H  S
Sbjct: 262 YNATKEARRRAVAENQPFLIEAMTYRIGHHSTS 294



>pdb|1JY1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
           (Tdp1)
          Length = 464

 Score = 25.4 bits (54), Expect = 9.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 132 VLLVSGGHS-----LILEARDYENIKIVATSLDDSFGESFDKVSKML 173
           +LLV G        L  +A+ YENI +    LD +FG    K   +L
Sbjct: 80  ILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKXXLLL 126



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,786,378
Number of Sequences: 13198
Number of extensions: 67888
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 3
length of query: 340
length of database: 2,899,336
effective HSP length: 89
effective length of query: 251
effective length of database: 1,724,714
effective search space: 432903214
effective search space used: 432903214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)