BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646193|ref|NP_208377.1| hypothetical protein
[Helicobacter pylori 26695]
(112 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core... 25 1.5
pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxy... 25 1.5
pdb|1D6N|A Chain A, Ternary Complex Structure Of Human Hgpr... 23 9.9
pdb|1BZY|A Chain A, Human Hgprtase With Transition State In... 23 9.9
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 25.4 bits (54), Expect = 1.5
Identities = 17/42 (40%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Query: 26 FWLLLGSLLGWCSLLMKRTAKIARPMRKVIARYHI---FLVL 64
FW G LL +C +L K +P RKV A H FL+L
Sbjct: 239 FWKQQGLLL-YCDILESTFEKFKQPSRKVDALDHFQKCFLIL 279
>pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 25.4 bits (54), Expect = 1.5
Identities = 17/42 (40%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Query: 26 FWLLLGSLLGWCSLLMKRTAKIARPMRKVIARYHI---FLVL 64
FW G LL +C +L K +P RKV A H FL+L
Sbjct: 221 FWKQQGLLL-YCDILESTFEKFKQPSRKVDALDHFQKCFLIL 261
>pdb|1D6N|A Chain A, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
pdb|1D6N|B Chain B, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
Length = 214
Score = 22.7 bits (47), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 39 LLMKRTAKIARPMRKVIARYHI 60
L+M RT ++AR + K + +HI
Sbjct: 37 LIMDRTERLARDVMKEMGGHHI 58
>pdb|1BZY|A Chain A, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|B Chain B, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|C Chain C, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|D Chain D, Human Hgprtase With Transition State Inhibitor
pdb|1HMP|A Chain A, Hypoxanthine Guanine Phosphoribosyltransferase
(Hgprtase) (E.C.2.4.2.8)
pdb|1HMP|B Chain B, Hypoxanthine Guanine Phosphoribosyltransferase
(Hgprtase) (E.C.2.4.2.8)
Length = 217
Score = 22.7 bits (47), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 39 LLMKRTAKIARPMRKVIARYHI 60
L+M RT ++AR + K + +HI
Sbjct: 40 LIMDRTERLARDVMKEMGGHHI 61
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.338 0.143 0.512
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,836
Number of Sequences: 13198
Number of extensions: 17209
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 2,899,336
effective HSP length: 76
effective length of query: 36
effective length of database: 1,896,288
effective search space: 68266368
effective search space used: 68266368
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 47 (22.7 bits)