BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646194|ref|NP_208378.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phos... 28 0.47
pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phos... 28 0.61
pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) ... 27 0.80
pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase... 26 2.3
pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H C... 26 2.3
pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase... 25 4.0
pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex O... 25 4.0
pdb|5LDH| Lactate Dehydrogenase H4 And S-lac-NAD+ Complex... 25 5.2
pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex Wi... 24 6.8
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 24 6.8
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex >gi|142777... 24 6.8
pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex Wi... 24 6.8
pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synt... 24 6.8
pdb|1BJQ|B Chain B, The Dolichos Biflorus Seed Lectin In Co... 24 8.8
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 28.1 bits (61), Expect = 0.47
Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 3/59 (5%)
Query: 35 NSFANFFRDEGVLYKEILCDACDHLKVNYNEESATSLIEQNMLSK---LLKDSLEKMSR 90
N+ ANF++D G+ Y I + ++ E A I+Q + K +L S E SR
Sbjct: 71 NTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHSREGYSR 129
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 27.7 bits (60), Expect = 0.61
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 35 NSFANFFRDEGVLYKEILCDACDHLKVNYNEESATSLIEQNMLSK 79
N+ ANF++D G+ Y I + ++ E A I+Q + K
Sbjct: 71 NTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQK 115
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
Length = 402
Score = 27.3 bits (59), Expect = 0.80
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 38 ANFFRDEGVLYKEILCDACDHLKVNYNEESATSLI 72
A FRDEG K + C AC H ++ A ++I
Sbjct: 274 AESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVI 308
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 25.8 bits (55), Expect = 2.3
Identities = 13/32 (40%), Positives = 18/32 (55%)
Query: 65 EESATSLIEQNMLSKLLKDSLEKMSRREIKEL 96
EE A SL+ +++ L+K EK R KEL
Sbjct: 132 EEQAISLVGEDLYQALIKGYTEKQWGRSAKEL 163
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 25.8 bits (55), Expect = 2.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 93 IKELCNELGMTNIDKVIGENKQVLIASTLTLFKAGGSHSYALAVSVAD 140
++EL E+G N + E ++++ S + K G ++A+ +SVAD
Sbjct: 211 LQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVAD 258
>pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1J91|B Chain B, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1JAM|A Chain A, Crystal Structure Of Apo-Form Of Z. Mays Ck2 Protein
Kinase Alpha Subunit
pdb|1LP4|A Chain A, Crystal Structure Of A Binary Complex Of The Catalytic
Subunit Of Protein Kinase Ck2 With Mg-Amppnp
pdb|1LPU|A Chain A, Low Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1LR4|A Chain A, Room Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1F0Q|A Chain A, Crystal Structure Of The Alpha Subunit Of Protein Kinase
Ck2 In Complex With The Nucleotide Competitive Inhibitor
Emodin
pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|B Chain B, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|C Chain C, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|D Chain D, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme
Length = 332
Score = 25.0 bits (53), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (57%)
Query: 74 QNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVI 109
+ + K+LK +K +REIK L N G NI K++
Sbjct: 58 EKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLL 93
>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Amppnp
pdb|1DAY|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Gmppnp
Length = 327
Score = 25.0 bits (53), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (57%)
Query: 74 QNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVI 109
+ + K+LK +K +REIK L N G NI K++
Sbjct: 57 EKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLL 92
>pdb|5LDH| Lactate Dehydrogenase H4 And S-lac-NAD+ Complex (E.C.1.1.1.27)
Length = 334
Score = 24.6 bits (52), Expect = 5.2
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 93 IKELCNELGMTNIDKVIGENKQVLIASTLTLFKAGGSHSYALAVSVAD 140
+++L E+G N + E ++++ S + K G ++A+ +SVAD
Sbjct: 212 LQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVAD 259
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-Adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 24.3 bits (51), Expect = 6.8
Identities = 12/51 (23%), Positives = 22/51 (42%), Gaps = 3/51 (5%)
Query: 18 YAKYPRRIAEELQHYG---GNSFANFFRDEGVLYKEILCDACDHLKVNYNE 65
+ +P +AE + G G +F + RD Y + + C + +Y E
Sbjct: 5 FTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRE 55
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 24.3 bits (51), Expect = 6.8
Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 13/61 (21%)
Query: 60 KVNYNEESATSLIEQNMLSKLLKDSLEK-------------MSRREIKELCNELGMTNID 106
K N N+E T E + S +LK+ L K + R ++KE+ E + N D
Sbjct: 43 KSNLNKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNED 102
Query: 107 K 107
K
Sbjct: 103 K 103
>pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 352
Score = 24.3 bits (51), Expect = 6.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 80 LLKDSLEKMSRREIKELCNELGMTNIDKVIGEN------KQVLIASTLTLFKAGGS 129
LL D +E++S ++IK+ +++ +V GEN K+ + S L+ AG S
Sbjct: 143 LLYDGVERVSLQDIKDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKS 198
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 24.3 bits (51), Expect = 6.8
Identities = 12/51 (23%), Positives = 22/51 (42%), Gaps = 3/51 (5%)
Query: 18 YAKYPRRIAEELQHYG---GNSFANFFRDEGVLYKEILCDACDHLKVNYNE 65
+ +P +AE + G G +F + RD Y + + C + +Y E
Sbjct: 5 FTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRE 55
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 24.3 bits (51), Expect = 6.8
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 117 IASTLTLFKAGGSHSYALAVSVADAMVRQTLG 148
+ T + +A G+H+Y +AVS +M LG
Sbjct: 316 VTETRAIKQALGNHAYNIAVSSTKSMTGHLLG 347
>pdb|1BJQ|B Chain B, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|H Chain H, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|A Chain A, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|G Chain G, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1LU1| The Structure Of The Dolichos Biflorus Seed Lectin In Complex With
The Forssman Disaccharide
pdb|1LU2|A Chain A, Dolichos Biflorus Seed Lectin In Complex With The Blood
Group A Trisaccharide
pdb|1LU2|B Chain B, Dolichos Biflorus Seed Lectin In Complex With The Blood
Group A Trisaccharide
pdb|1BJQ|C Chain C, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|D Chain D, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|E Chain E, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|F Chain F, The Dolichos Biflorus Seed Lectin In Complex With Adenine
Length = 253
Score = 23.9 bits (50), Expect = 8.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 64 NEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTN 104
N E+A LI N + LL SL SRR L + +TN
Sbjct: 158 NGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITN 198
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 868,682
Number of Sequences: 13198
Number of extensions: 31375
Number of successful extensions: 112
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 14
length of query: 155
length of database: 2,899,336
effective HSP length: 81
effective length of query: 74
effective length of database: 1,830,298
effective search space: 135442052
effective search space used: 135442052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)