BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646195|ref|NP_208379.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(253 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F1Z|A Chain A, Tnsa, A Catalytic Component Of The Tn7 ... 27 1.7
pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influe... 26 5.1
pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA 25 6.6
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 25 8.6
>pdb|1F1Z|A Chain A, Tnsa, A Catalytic Component Of The Tn7 Transposition
System
pdb|1F1Z|B Chain B, Tnsa, A Catalytic Component Of The Tn7 Transposition
System
Length = 273
Score = 27.3 bits (59), Expect = 1.7
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 59 ERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILE 118
E++ E +Y+ FI + KEI V + ++ Y+ KTE E L
Sbjct: 144 EKLELERRYWQQKQIPWFIFTD----KEINPVVKENIEWLYSVKTEEVSAELLAQLSPLA 199
Query: 119 RSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLT---LFKMGGFKSYQ 166
L+E DE + +C ++ I L + LT K +KS++
Sbjct: 200 HILQEKGDENIINVCKQVDIAYDLELGKTLSEIRALTANGFIKFNIYKSFR 250
>pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influenzae Luxs
pdb|1J6W|B Chain B, Crystal Structure Of Haemophilus Influenzae Luxs
Length = 175
Score = 25.8 bits (55), Expect = 5.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 150 SAATLTLFKMGGFKSYQLAVIVANAVAKTILGRGLSLAGNQVLTRTLSFLTG 201
S L +++ G + + L A+ +AK ++ RG+ + N+ L+ S L G
Sbjct: 119 SIPELNIYQCGSYTEHSLED--AHEIAKNVIARGIGVNKNEDLSLDNSLLKG 168
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 25.4 bits (54), Expect = 6.6
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 30 GKDGEKRHNEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILC 89
G +GE + N+ + ++ + + E+++ L+YY ++G+ +YK +C
Sbjct: 24 GDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK-FVC 82
Query: 90 DVCDKLKVNYNKKTETTLI---EQNMLSKI 116
D+ K + Y+ L+ EQ L+++
Sbjct: 83 DL--KTLIGYSAAELNRLVIECEQKKLARM 110
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 25.0 bits (53), Expect = 8.6
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 102 KTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGG 161
K TL++Q + ++ + E +++ DE++ K+TD+ + ++ L+ G
Sbjct: 108 KQAETLLDQGVHPTVISNGYR-LAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGL 166
Query: 162 FKSY--QLAVIVANAVAKTILGR 182
+ L V NAVA+ G+
Sbjct: 167 SNDFLADLVVKAVNAVAEVRDGK 189
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,357,083
Number of Sequences: 13198
Number of extensions: 52257
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 4
length of query: 253
length of database: 2,899,336
effective HSP length: 86
effective length of query: 167
effective length of database: 1,764,308
effective search space: 294639436
effective search space used: 294639436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)