BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646205|ref|NP_208380.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (207 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1E5D|A  Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) ...    26  2.9
pdb|1F1Z|A  Chain A, Tnsa, A Catalytic Component Of The Tn7 ...    26  3.8
pdb|1INP|    Inositol Polyphosphate 1-Phosphatase (1-Ptase) ...    25  6.5
pdb|1A4Y|A  Chain A, Ribonuclease Inhibitor-Angiogenin Compl...    25  8.4
pdb|1QI9|B  Chain B, X-Ray Siras Structure Determination Of ...    25  8.4

>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
           Desulfovibrio Gigas
 pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
           Desulfovibrio Gigas
          Length = 402

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 37  FRDEGVLYKEILCDACDHLKV 57
           FRDEG   K + C AC H ++
Sbjct: 277 FRDEGCTVKLMWCKACHHSQI 297



>pdb|1F1Z|A Chain A, Tnsa, A Catalytic Component Of The Tn7 Transposition
           System
 pdb|1F1Z|B Chain B, Tnsa, A Catalytic Component Of The Tn7 Transposition
           System
          Length = 273

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 19/71 (26%), Positives = 33/71 (45%)

Query: 45  KEILCDACDHLKVNYNKKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKL 104
           KEI     ++++  Y+ K++    E     S L   L++  DE I  +C ++ +    +L
Sbjct: 166 KEINPVVKENIEWLYSVKTEEVSAELLAQLSPLAHILQEKGDENIINVCKQVDIAYDLEL 225

Query: 105 GKQALSTAALT 115
           GK      ALT
Sbjct: 226 GKTLSEIRALT 236



>pdb|1INP|   Inositol Polyphosphate 1-Phosphatase (1-Ptase)
           (Inositol-1,4-Bisphosphate 1-Phosphatase) (E.C.3.1.3.57)
           Complexed With Magnesium
          Length = 400

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 67  LIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMGGFKSYQ 126
           +I+ENM +       +K+  EE  EL ++LG K   +LG     T AL    + G K   
Sbjct: 60  VIKENMENKFPGLG-KKIFGEESNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNK--- 115

Query: 127 LALIVANAVIKAIFQ 141
              + + A+ K + Q
Sbjct: 116 ---LASEALAKVVHQ 127



>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
 pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
          Length = 460

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 65  TTLIEENMLSSILQKSLEKMSDEEIRELCDELG 97
           ++++ +N     LQ S  ++ D  +RELC  LG
Sbjct: 333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 365



>pdb|1QI9|B Chain B, X-Ray Siras Structure Determination Of A
           Vanadium-Dependent Haloperoxidase From Ascophyllum
           Nodosum At 2.0 A Resolution
 pdb|1QI9|A Chain A, X-Ray Siras Structure Determination Of A
           Vanadium-Dependent Haloperoxidase From Ascophyllum
           Nodosum At 2.0 A Resolution
          Length = 556

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 162 PIGWIITGVWT-AIDIAGPAY-RVTIPACILVATLRLKAQANEI 203
           P+G ++      AIDI+GPA+   TIP    + +  L AQ  E+
Sbjct: 98  PVGRLVNPTAAFAIDISGPAFSATTIPPVPTLPSPELAAQLAEV 141



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,102,890
Number of Sequences: 13198
Number of extensions: 40763
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 5
length of query: 207
length of database: 2,899,336
effective HSP length: 84
effective length of query: 123
effective length of database: 1,790,704
effective search space: 220256592
effective search space used: 220256592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)