BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644791|ref|NP_206961.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(240 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc 110 1e-25
pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypoth... 110 2e-25
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 29 0.55
pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deami... 27 1.6
pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodo... 27 2.1
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Bioch... 26 3.6
pdb|1FYJ|A Chain A, Solution Structure Of Multi-Functional ... 26 3.6
pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpa... 26 3.6
pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergil... 25 6.1
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 25 6.1
pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex >gi|4140012|pdb|1UE... 25 8.0
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
Length = 249
Score = 110 bits (275), Expect = 1e-25
Identities = 71/237 (29%), Positives = 126/237 (52%), Gaps = 14/237 (5%)
Query: 7 YRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDA 66
+R+AA++ K K+F K+ + + AAK GG +PD N +LR A+ A + NM +D ++
Sbjct: 15 HRKAAQDA---KRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNR 71
Query: 67 AIKR--ASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPN 124
AI R + N+ I YEG G I++EC++DN RT+A ++ F+K G ++ +
Sbjct: 72 AIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKC-GGNLGTD 130
Query: 125 GSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKII-IRGDYNSFK 183
GS+ ++F++K V K + + + +E AL + G E++ +D I + +
Sbjct: 131 GSVAYLFSKKGVISFEKGDEDTI------MEAAL-EAGAEDVVTYDDGAIDVYTAWEEMG 183
Query: 184 LLNEGFESLKLPILKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNIE 240
+ + E+ L A + I +T +++ E +L+D +ED DDV +Y N E
Sbjct: 184 KVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 240
>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
Aq1575 From Aquifex Aeolicus
Length = 249
Score = 110 bits (274), Expect = 2e-25
Identities = 77/223 (34%), Positives = 117/223 (51%), Gaps = 9/223 (4%)
Query: 21 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKR-ASSKEG-NL 78
K+F KL + I +A + GG P+ N +LRTAI AK N P +NI+ AIK+ A EG
Sbjct: 23 KLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANXPWENIERAIKKGAGELEGEQF 82
Query: 79 SEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFE 138
E+ YEG A GV + + TDN RT + ++ F K G ++ +G + ++F RK E
Sbjct: 83 EEVIYEGYAPGGVAVXVLATTDNRNRTTSEVRHVFTK-HGGNLGASGCVSYLFERKGYIE 141
Query: 139 CLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKLPILK 198
EV S E+L I+ G E+++ E+ II + E E L +PI K
Sbjct: 142 VPAKEV-----SEEELLEKAIEVGAEDVQPGEEVHIIYTVPEELYEVKENLEKLGVPIEK 196
Query: 199 ASLQRIATTPIELNDEQ-MELTEKLLDRIEDDDDVVALYTNIE 240
A + + +++NDE+ + KLL+ +E+ DDV + N E
Sbjct: 197 AQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIANFE 239
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 444
Score = 28.9 bits (63), Expect = 0.55
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 70 RASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIAN-LKSYFNKTQGASIVPNGSLE 128
R +EG L + E + GV + +E M + N L+S F GS +
Sbjct: 160 RKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNL--------GSDK 211
Query: 129 FMFNRKSVFECLKNEVENLKLSL---EDLEFALIDY----GLEELEEVEDKIIIRGDYNS 181
+ + + LK +++ L E+L+ ID G+ ++E+ DKI +G+Y+
Sbjct: 212 TKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEI-DKICKKGEYSG 270
Query: 182 FKLLNEGFESLKLPILKAS 200
+ EG + LP+++ S
Sbjct: 271 ADVSREGVQRDLLPLVEGS 289
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 27.3 bits (59), Expect = 1.6
Identities = 11/38 (28%), Positives = 24/38 (62%)
Query: 59 MPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIME 96
+P + AI+ + +EG L++ YEGK+ G++ +++
Sbjct: 271 VPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIK 308
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 26.9 bits (58), Expect = 2.1
Identities = 17/44 (38%), Positives = 26/44 (58%), Gaps = 7/44 (15%)
Query: 198 KASLQRIATTPIELNDEQMELTEKLLDRIE-------DDDDVVA 234
K SL +I+ + ++L DE+++ E L R+E DDDD VA
Sbjct: 105 KHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVA 148
>pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 26.2 bits (56), Expect = 3.6
Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 11/88 (12%)
Query: 124 NGSLEFMFN--RKSVFECLKNEVENLKLSLEDLEFALIDYGL-----EELEEV-EDK--- 172
N S+E N + + E KN++EN+K LED+ F + D + EE+ ++ ED+
Sbjct: 63 NKSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVD 122
Query: 173 IIIRGDYNSFKLLNEGFESLKLPILKAS 200
III G + L S+ ++K S
Sbjct: 123 IIIMGSHGKTNLKEILLGSVTENVIKKS 150
>pdb|1FYJ|A Chain A, Solution Structure Of Multi-Functional Peptide Motif-1
Present In Human Glutamyl-Prolyl Trna Synthetase (Eprs)
Length = 57
Score = 26.2 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 55 KAQNMPKDNIDAAIKRASSKEGNLSEIT 82
KA+ PK+++DAA+K+ S + E T
Sbjct: 20 KAKKAPKEDVDAAVKQLLSLKAEYKEKT 47
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 26.2 bits (56), Expect = 3.6
Identities = 19/65 (29%), Positives = 28/65 (42%)
Query: 80 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFEC 139
E+ EGK GV+ ++ M T G V N S E + +KS+ E
Sbjct: 193 EVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRES 252
Query: 140 LKNEV 144
LK+E+
Sbjct: 253 LKSEI 257
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 25.4 bits (54), Expect = 6.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 68 IKRASSKEGNLSEITY-----EGKANFGVLIIMECMTDNPT 103
IK S G++SEITY G +++GV+I + PT
Sbjct: 257 IKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPT 297
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 25.4 bits (54), Expect = 6.1
Identities = 33/139 (23%), Positives = 59/139 (41%), Gaps = 17/139 (12%)
Query: 70 RASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIAN-LKSYFNKTQGASIVPNGSLE 128
R +EG L + E + GV +E N L+S F GS +
Sbjct: 160 RKKLREGQLDDKEIEIDVSAGVSXGVEIXAPPGXEEXTNQLQSLFQNL--------GSDK 211
Query: 129 FMFNRKSVFECLKNEVENLKLSL---EDLEFALIDY----GLEELEEVEDKIIIRGDYNS 181
+ + + LK +++ L E+L+ ID G+ ++E+ DKI +G+Y+
Sbjct: 212 TKKRKXKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEI-DKICKKGEYSG 270
Query: 182 FKLLNEGFESLKLPILKAS 200
+ EG + LP+++ S
Sbjct: 271 ADVSREGVQRDLLPLVEGS 289
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 25.0 bits (53), Expect = 8.0
Identities = 11/38 (28%), Positives = 24/38 (62%), Gaps = 4/38 (10%)
Query: 58 NMPKDNIDAAIKRASSKEGNLSEIT----YEGKANFGV 91
++PKD +D+A+++A ++ +T YEG+A+ +
Sbjct: 25 DLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIXI 62
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,293,000
Number of Sequences: 13198
Number of extensions: 50105
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 11
length of query: 240
length of database: 2,899,336
effective HSP length: 86
effective length of query: 154
effective length of database: 1,764,308
effective search space: 271703432
effective search space used: 271703432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)