BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644792|ref|NP_206962.1| delta-aminolevulinic acid
dehydratase (hemB) [Helicobacter pylori 26695]
(323 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Aci... 311 5e-86
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Sy... 311 5e-86
pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Sy... 310 1e-85
pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A ... 253 2e-68
pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilino... 253 2e-68
pdb|1E51|A Chain A, Crystal Structure Of Native Human Eryth... 228 5e-61
pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 202 3e-53
pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratas... 199 5e-52
pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 199 5e-52
pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 199 5e-52
pdb|1AW5| 5-Aminolevulinate Dehydratase From Saccharomyce... 164 1e-41
pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a 27 4.1
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 311 bits (798), Expect = 5e-86
Identities = 162/315 (51%), Positives = 217/315 (68%), Gaps = 2/315 (0%)
Query: 3 KRLRRLRSSENLRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLKE 62
+R RRLR S LRAM ET L+++D + P+FV E K + +MPGV ++ + L +E
Sbjct: 5 QRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYK-AVEAMPGVMRIPEKHLARE 63
Query: 63 CEELVGLGVKAVLLFGIPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFCEY 122
E + G+++V+ FGI H D TGS A +D +VA+ ++ K+ ++IV++D CFCEY
Sbjct: 64 IERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEY 123
Query: 123 TDHGHCGILENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNAGY 182
T HGHCG+L+ V ND TLE L Q ++ A +G D +APS MDG V ++R+ LD AG+
Sbjct: 124 TSHGHCGVLKEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGF 183
Query: 183 THTPIMSYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGADI 242
T IMSYSTKFASS+YGPFR+ A SA GDRKSYQM+ N++EA+ ESL DE QGAD
Sbjct: 184 KDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEAQGADC 242
Query: 243 LMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKR 302
LMVKPA AYLDIV+E+R+ T LP+ Y VSGEYAM+K A I+ E V+LE++ KR
Sbjct: 243 LMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKR 302
Query: 303 AGADMIISYHAKEVA 317
AGAD+I SY A ++A
Sbjct: 303 AGADLIFSYFALDLA 317
>pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 311 bits (798), Expect = 5e-86
Identities = 162/317 (51%), Positives = 217/317 (68%), Gaps = 2/317 (0%)
Query: 1 MFKRLRRLRSSENLRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLL 60
+ +R RRLR S LRAM ET L+++D + P+FV E K + +MPGV ++ + L
Sbjct: 3 LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYK-AVEAMPGVMRIPEKHLA 61
Query: 61 KECEELVGLGVKAVLLFGIPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFC 120
+E E + G+++V+ FGI H D TGS A +D +VA+ ++ K+ ++IV++D CFC
Sbjct: 62 REIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFC 121
Query: 121 EYTDHGHCGILENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNA 180
EYT HGHCG+L V ND TLE L Q ++ A +G D +APS MDG V ++R+ LD A
Sbjct: 122 EYTSHGHCGVLXEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAA 181
Query: 181 GYTHTPIMSYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGA 240
G+ T IMSYSTKFASS+YGPFR+ A SA GDRKSYQM+ N++EA+ ESL DE QGA
Sbjct: 182 GFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEAQGA 240
Query: 241 DILMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCF 300
D LMVKPA AYLDIV+E+R+ T LP+ Y VSGEYAM+K A I+ E V+LE++
Sbjct: 241 DCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSI 300
Query: 301 KRAGADMIISYHAKEVA 317
KRAGAD+I SY A ++A
Sbjct: 301 KRAGADLIFSYFALDLA 317
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 310 bits (795), Expect = 1e-85
Identities = 162/317 (51%), Positives = 217/317 (68%), Gaps = 2/317 (0%)
Query: 1 MFKRLRRLRSSENLRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLL 60
+ +R RRLR S LRAM ET L+++D + P+FV E K + +MPGV ++ + L
Sbjct: 3 LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYK-AVEAMPGVMRIPEKHLA 61
Query: 61 KECEELVGLGVKAVLLFGIPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFC 120
+E E + G+++V+ FGI H D TGS A +D +VA+ ++ K+ ++IV++D CFC
Sbjct: 62 REIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFC 121
Query: 121 EYTDHGHCGILENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNA 180
EYT HGHCG+L V ND TLE L Q ++ A +G D +APS MDG V ++R+ LD A
Sbjct: 122 EYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAA 181
Query: 181 GYTHTPIMSYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGA 240
G+ T IMSYSTKFASS+YGPFR+ A SA GDRKSYQM+ N++EA+ ESL DE QGA
Sbjct: 182 GFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEAQGA 240
Query: 241 DILMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCF 300
D LMVKPA AYLDIV+E+R+ T LP+ Y VSGEYAM+K A I+ E V+LE++
Sbjct: 241 DCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSI 300
Query: 301 KRAGADMIISYHAKEVA 317
KRAGAD+I SY A ++A
Sbjct: 301 KRAGADLIFSYFALDLA 317
>pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A Mg2-Dependent 5-
Aminolevulinic Acid Dehydratase
pdb|1B4K|B Chain B, High Resolution Crystal Structure Of A Mg2-Dependent 5-
Aminolevulinic Acid Dehydratase
Length = 337
Score = 253 bits (647), Expect = 2e-68
Identities = 141/326 (43%), Positives = 213/326 (65%), Gaps = 7/326 (2%)
Query: 2 FKRLRRLRSSENLRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLK 61
+ RLRR R + R ++RE L +DD I P+FV++ + + I SMPGV ++S++ LL
Sbjct: 12 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQ-RESIPSMPGVERLSIDQLLI 70
Query: 62 ECEELVGLGVKAVLLFGIP--KHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCF 119
E EE V LG+ A+ LF + + K + A N + I +A + +++RF +L +I D+
Sbjct: 71 EAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVAL 130
Query: 120 CEYTDHGHCGILENAS-VSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLD 178
+T HG GIL++ V ND ++++L Q L AE+G ++APS+MMDG + ++R+ L+
Sbjct: 131 DPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALE 190
Query: 179 NAGYTHTPIMSYSTKFASSYYGPFRDVANSAPSF--GDRKSYQMDYANQKEALLESLEDE 236
+AG+T+ IM+YS K+AS+YYGPFRD SA + G++ +YQMD AN EAL E D
Sbjct: 191 SAGHTNVRIMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADL 250
Query: 237 KQGADILMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYAMLKLAQKHNLINYESVLLET 296
+GAD++MVKP + YLDIV+ ++D P +Y VSGEYAM A ++ + ESV+LE+
Sbjct: 251 AEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWL-AESVILES 309
Query: 297 MTCFKRAGADMIISYHAKEVANLLQR 322
+T FKRAGAD I++Y AK+ A L+R
Sbjct: 310 LTAFKRAGADGILTYFAKQAAEQLRR 335
>pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
pdb|1GZG|B Chain B, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
Length = 337
Score = 253 bits (646), Expect = 2e-68
Identities = 140/326 (42%), Positives = 213/326 (64%), Gaps = 7/326 (2%)
Query: 2 FKRLRRLRSSENLRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLK 61
+ RLRR R + R ++RE L +DD I P+FV++ + + I SMPGV ++S++ LL
Sbjct: 12 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQ-RESIPSMPGVERLSIDQLLI 70
Query: 62 ECEELVGLGVKAVLLFGIP--KHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCF 119
E EE V LG+ A+ LF + + K + A N + I +A + +++RF +L +I D+
Sbjct: 71 EAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVAL 130
Query: 120 CEYTDHGHCGILENAS-VSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLD 178
+T HG GIL++ V ND ++++L Q L AE+G ++APS+MMDG + ++R+ L+
Sbjct: 131 DPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALE 190
Query: 179 NAGYTHTPIMSYSTKFASSYYGPFRDVANSAPSF--GDRKSYQMDYANQKEALLESLEDE 236
+AG+T+ +M+YS K+AS+YYGPFRD SA + G++ +YQMD AN EAL E D
Sbjct: 191 SAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADL 250
Query: 237 KQGADILMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYAMLKLAQKHNLINYESVLLET 296
+GAD++MVKP + YLDIV+ ++D P +Y VSGEYAM A ++ + ESV+LE+
Sbjct: 251 AEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWL-AESVILES 309
Query: 297 MTCFKRAGADMIISYHAKEVANLLQR 322
+T FKRAGAD I++Y AK+ A L+R
Sbjct: 310 LTAFKRAGADGILTYFAKQAAEQLRR 335
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte
5-Aminolaevulinic Acid Dehydratase
pdb|1E51|B Chain B, Crystal Structure Of Native Human Erythrocyte
5-Aminolaevulinic Acid Dehydratase
Length = 330
Score = 228 bits (582), Expect = 5e-61
Identities = 127/306 (41%), Positives = 194/306 (62%), Gaps = 6/306 (1%)
Query: 21 TRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLKECEELVGLGVKAVLLFGIP 80
T LN + I P+FV + I+ I+S+PGV + ++ L + LV G++ VL+FG+P
Sbjct: 24 TTLNASNLIYPIFVTDVPDDIQ-PITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIFGVP 82
Query: 81 KH--KDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFCEYTDHGHCGIL-ENASVS 137
KD GS A +++ +A ++K F +L+V D+C C YT HGHCG+L EN +
Sbjct: 83 SRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFR 142
Query: 138 NDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNAGY-THTPIMSYSTKFAS 196
+++ + L L A++G ++APS+MMDG V ++++ L G +MSYS KFAS
Sbjct: 143 AEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFAS 202
Query: 197 SYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGADILMVKPALAYLDIVK 256
+YGPFRD A S+P+FGDR+ YQ+ + AL D ++GAD+LMVKP + YLDIV+
Sbjct: 203 CFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVKPGMPYLDIVR 262
Query: 257 EIRD-HTLLPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKRAGADMIISYHAKE 315
E++D H LPLA+Y+VSGE+AML + + ++ +LE MT F+RAGAD+II+Y+ +
Sbjct: 263 EVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQ 322
Query: 316 VANLLQ 321
+ L+
Sbjct: 323 LLQWLK 328
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 202 bits (515), Expect = 3e-53
Identities = 117/313 (37%), Positives = 189/313 (60%), Gaps = 7/313 (2%)
Query: 14 LRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLKECEELVGLGVKA 73
LR E +L + I PLF+ ++ EI S+P + ++ + L + LV G+++
Sbjct: 27 LRQWQSERQLTKNMLIFPLFISDNPDDF-TEIDSLPNINRIGVNRLKDYLKPLVAKGLRS 85
Query: 74 VLLFG---IPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFCEYTDHGHCGI 130
V+LFG IP KD G+ A + V + K I+++F +L +I D+C CEYT HGHCG+
Sbjct: 86 VILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREKFPELYIICDVCLCEYTSHGHCGV 145
Query: 131 L-ENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNAGYTH-TPIM 188
L ++ +++ ++++ L + A++G +APS+M+DG + +++ L NA H T ++
Sbjct: 146 LYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVL 205
Query: 189 SYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGADILMVKPA 248
SY+ KF+ + YGPFRD A SAPS GDRK YQ+ A + A D +GAD ++VKP+
Sbjct: 206 SYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADGIIVKPS 265
Query: 249 LAYLDIVKEIRDHTL-LPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKRAGADM 307
YLDI+++ + LP+ Y+VSGEYAML A + +++ +++ E+ T F RAGA +
Sbjct: 266 TFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHTGFLRAGARL 325
Query: 308 IISYHAKEVANLL 320
II+Y A E + L
Sbjct: 326 IITYLAPEFLDWL 338
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic
Acid Complex
pdb|1GJP|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Oxosebacic Acid
Length = 340
Score = 199 bits (505), Expect = 5e-52
Identities = 116/313 (37%), Positives = 187/313 (59%), Gaps = 7/313 (2%)
Query: 14 LRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLKECEELVGLGVKA 73
LR E +L + I PLF+ ++ EI S+P + ++ + L + LV G+++
Sbjct: 27 LRQWQSERQLTKNMLIFPLFISDNPDDF-TEIDSLPNINRIGVNRLKDYLKPLVAKGLRS 85
Query: 74 VLLFG---IPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFCEYTDHGHCGI 130
V+LFG IP KD G+ A + V + K I++ F +L +I D+C CEYT HGHCG+
Sbjct: 86 VILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGV 145
Query: 131 L-ENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNAGYTH-TPIM 188
L ++ +++ ++++ L + A++G +APS+M+DG + +++ L NA H T ++
Sbjct: 146 LYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVL 205
Query: 189 SYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGADILMVKPA 248
SY+ KF+ + YGPFRD A SAPS GDRK YQ+ A + A D +GAD ++VKP+
Sbjct: 206 SYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADGIIVKPS 265
Query: 249 LAYLDIVKEIRDHTL-LPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKRAGADM 307
YLDI+++ + LP+ Y+VSGEYAML A + +++ +++ E+ F RAGA +
Sbjct: 266 TFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARL 325
Query: 308 IISYHAKEVANLL 320
II+Y A E + L
Sbjct: 326 IITYLAPEFLDWL 338
>pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Succinylacetone At 2.0 A Resolution.
pdb|1H7N|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid At 1.6 A Resolution
pdb|1H7P|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Keto-5-Amino-Hexanoic (Kah) At 1.64 A
Resolution
pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex
pdb|1QML|A Chain A, Hg Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase
Length = 342
Score = 199 bits (505), Expect = 5e-52
Identities = 116/313 (37%), Positives = 187/313 (59%), Gaps = 7/313 (2%)
Query: 14 LRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLKECEELVGLGVKA 73
LR E +L + I PLF+ ++ EI S+P + ++ + L + LV G+++
Sbjct: 27 LRQWQSERQLTKNMLIFPLFISDNPDDF-TEIDSLPNINRIGVNRLKDYLKPLVAKGLRS 85
Query: 74 VLLFG---IPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFCEYTDHGHCGI 130
V+LFG IP KD G+ A + V + K I++ F +L +I D+C CEYT HGHCG+
Sbjct: 86 VILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGV 145
Query: 131 L-ENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNAGYTH-TPIM 188
L ++ +++ ++++ L + A++G +APS+M+DG + +++ L NA H T ++
Sbjct: 146 LYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVL 205
Query: 189 SYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGADILMVKPA 248
SY+ KF+ + YGPFRD A SAPS GDRK YQ+ A + A D +GAD ++VKP+
Sbjct: 206 SYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADGIIVKPS 265
Query: 249 LAYLDIVKEIRDHTL-LPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKRAGADM 307
YLDI+++ + LP+ Y+VSGEYAML A + +++ +++ E+ F RAGA +
Sbjct: 266 TFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARL 325
Query: 308 IISYHAKEVANLL 320
II+Y A E + L
Sbjct: 326 IITYLAPEFLDWL 338
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 5-Aminolaevulinic Acid At 1.7 A
Resolution
Length = 341
Score = 199 bits (505), Expect = 5e-52
Identities = 116/313 (37%), Positives = 187/313 (59%), Gaps = 7/313 (2%)
Query: 14 LRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLKECEELVGLGVKA 73
LR E +L + I PLF+ ++ EI S+P + ++ + L + LV G+++
Sbjct: 27 LRQWQSERQLTKNMLIFPLFISDNPDDF-TEIDSLPNINRIGVNRLKDYLKPLVAKGLRS 85
Query: 74 VLLFG---IPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFCEYTDHGHCGI 130
V+LFG IP KD G+ A + V + K I++ F +L +I D+C CEYT HGHCG+
Sbjct: 86 VILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGV 145
Query: 131 L-ENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNAGYTH-TPIM 188
L ++ +++ ++++ L + A++G +APS+M+DG + +++ L NA H T ++
Sbjct: 146 LYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVL 205
Query: 189 SYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGADILMVKPA 248
SY+ KF+ + YGPFRD A SAPS GDRK YQ+ A + A D +GAD ++VKP+
Sbjct: 206 SYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADGIIVKPS 265
Query: 249 LAYLDIVKEIRDHTL-LPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKRAGADM 307
YLDI+++ + LP+ Y+VSGEYAML A + +++ +++ E+ F RAGA +
Sbjct: 266 TFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARL 325
Query: 308 IISYHAKEVANLL 320
II+Y A E + L
Sbjct: 326 IITYLAPEFLDWL 338
>pdb|1AW5| 5-Aminolevulinate Dehydratase From Saccharomyces Cerevisiae
Length = 326
Score = 164 bits (415), Expect = 1e-41
Identities = 102/313 (32%), Positives = 173/313 (54%), Gaps = 21/313 (6%)
Query: 14 LRAMLRETRLNIDDFIAPLFVIESDSCIKNEISSMPGVYQMSMEPLLKECEELVGLGVKA 73
LR E +L + I PLF+ ++ EI S P + ++ + L + LV G+++
Sbjct: 27 LRQWQSERQLTKNXLIFPLFISDNPDDF-TEIDSAPNINRIGVNRLKDYLKPLVAKGLRS 85
Query: 74 VLLFG---IPKHKDATGSHALNKDHIVAKAAKEIKKRFKDLIVIADLCFCEYTDHGHCGI 130
V+LFG IP KD G+ A + V + + I+++F +L +I D+C CEYT HGHCG+
Sbjct: 86 VILFGVPLIPGTKDPVGTAADDPAGPVIQGIRFIREKFPELYIICDVCLCEYTSHGHCGV 145
Query: 131 L-ENASVSNDKTLEILNLQGLILAESGVDILAPSNMMDGNVLSLRKTLDNAGYTH-TPIM 188
L ++ +++ ++++ L + A++G +APS+ +DG + +++ L NA H T ++
Sbjct: 146 LYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDXIDGRIRDIKRGLINANLAHKTFVL 205
Query: 189 SYSTKFASSYYGPFRDVANSAPSFGDRKSYQMDYANQKEALLESLEDEKQGADILMVKPA 248
SY+ KF+ + YGP YQ+ A + A D +GAD ++VKP+
Sbjct: 206 SYAAKFSGNLYGP--------------ACYQLPPAGRGLARRALERDXSEGADGIIVKPS 251
Query: 249 LAYLDIVKEIRDHTL-LPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKRAGADM 307
YLDIV++ + LP+ Y+VSGEYA L A + +++ +++ E+ F RAGA +
Sbjct: 252 TFYLDIVRDASEICKDLPICAYHVSGEYAXLHAAAEKGVVDLKTIAFESHQGFLRAGARL 311
Query: 308 IISYHAKEVANLL 320
II+Y A E + L
Sbjct: 312 IITYLAPEFLDWL 324
>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a
Length = 143
Score = 26.6 bits (57), Expect = 4.1
Identities = 17/86 (19%), Positives = 39/86 (44%)
Query: 234 EDEKQGADILMVKPALAYLDIVKEIRDHTLLPLALYNVSGEYAMLKLAQKHNLINYESVL 293
E+E + +++ + Y ++K + + L + V + +K IN ++
Sbjct: 17 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 76
Query: 294 LETMTCFKRAGADMIISYHAKEVANL 319
L + ++ AD+I+ Y+A E +L
Sbjct: 77 LVGLRDYQDNKADVILKYNADEARSL 102
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,708,941
Number of Sequences: 13198
Number of extensions: 67487
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 12
length of query: 323
length of database: 2,899,336
effective HSP length: 88
effective length of query: 235
effective length of database: 1,737,912
effective search space: 408409320
effective search space used: 408409320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)