BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644794|ref|NP_206964.1| hypothetical protein
[Helicobacter pylori 26695]
         (173 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1G6A|A  Chain A, Pse-4 Carbenicillinase, R234k Mutant          25  3.7
pdb|1G68|A  Chain A, Pse-4 Carbenicillinase, Wild Type             25  3.7
pdb|1QHT|A  Chain A, Dna Polymerase From Thermococcus Sp. 9o...    25  6.3
pdb|1IM8|A  Chain A, Crystal Structure Of Yeco From Haemophi...    24  8.3

>pdb|1G6A|A Chain A, Pse-4 Carbenicillinase, R234k Mutant
          Length = 271

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 48  TTINEILNNYSDYRAIEDYLYKIGFRETTIENLE 81
           T  N IL+     + + D+L +IG +ET ++ +E
Sbjct: 111 TAANIILSAVGGPKGVTDFLRQIGDKETRLDRIE 144



>pdb|1G68|A Chain A, Pse-4 Carbenicillinase, Wild Type
          Length = 271

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 48  TTINEILNNYSDYRAIEDYLYKIGFRETTIENLE 81
           T  N IL+     + + D+L +IG +ET ++ +E
Sbjct: 111 TAANIILSAVGGPKGVTDFLRQIGDKETRLDRIE 144



>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
          Length = 775

 Score = 24.6 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 61 RAIEDYLYKIGFRETTIENLEKVLAKR 87
          R  E Y Y +   ++ IE+++KV AKR
Sbjct: 32 RTFEPYFYALLKDDSAIEDVKKVTAKR 58



>pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophilus Influenzae
           (Hi0319), A Methyltransferase With A Bound S-
           Adenosylhomocysteine
 pdb|1IM8|B Chain B, Crystal Structure Of Yeco From Haemophilus Influenzae
           (Hi0319), A Methyltransferase With A Bound S-
           Adenosylhomocysteine
          Length = 244

 Score = 24.3 bits (51), Expect = 8.3
 Identities = 12/56 (21%), Positives = 31/56 (54%), Gaps = 2/56 (3%)

Query: 48  TTINEILNN-YSDYRAIEDYL-YKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEV 101
           T IN +L + +  ++    Y   ++  + T +EN+ +  +   H++  +N+G+++V
Sbjct: 173 TKINHLLIDLHHQFKRANGYSELEVSQKRTALENVXRTDSIETHKVRLKNVGFSQV 228



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.331    0.145    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 847,112
Number of Sequences: 13198
Number of extensions: 30492
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 4
length of query: 173
length of database: 2,899,336
effective HSP length: 82
effective length of query: 91
effective length of database: 1,817,100
effective search space: 165356100
effective search space used: 165356100
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)