BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644795|ref|NP_206965.1| response regulator (ompR)
[Helicobacter pylori 26695]
(225 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 127 1e-30
pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver ... 93 2e-20
pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia C... 84 1e-17
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 72 4e-14
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 72 4e-14
pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylat... 70 3e-13
pdb|1ODD| Ompr C-Terminal Domain (Ompr-C) From Escherichi... 57 1e-09
pdb|1OPC| Ompr Dna-Binding Domain, Escherichia Coli 57 1e-09
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RE... 56 4e-09
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 54 1e-08
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 54 2e-08
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 50 2e-07
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Co... 49 5e-07
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 49 6e-07
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 49 6e-07
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 49 6e-07
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 49 6e-07
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 48 8e-07
pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Resp... 48 8e-07
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 48 8e-07
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 48 8e-07
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 48 8e-07
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 48 1e-06
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 48 1e-06
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 48 1e-06
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 48 1e-06
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 48 1e-06
pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp... 47 1e-06
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 47 2e-06
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 47 2e-06
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 46 3e-06
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain >gi... 46 3e-06
pdb|5CHY| Structure Of Chemotaxis Protein Chey 46 4e-06
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 45 5e-06
pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal... 45 5e-06
pdb|1TMY| Chey From Thermotoga Maritima (Apo-I) >gi|27811... 45 5e-06
pdb|1EHC| Structure Of Signal Transduction Protein Chey 45 7e-06
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 45 7e-06
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 45 9e-06
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 45 9e-06
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 45 9e-06
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 44 2e-05
pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial P... 44 2e-05
pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound F... 44 2e-05
pdb|1GXP|A Chain A, Phob Effector Domain In Complex With Ph... 40 3e-04
pdb|1QQI|A Chain A, Solution Structure Of The Dna-Binding A... 40 3e-04
pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domai... 34 0.016
pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilu... 26 3.3
pdb|1BML|C Chain C, Complex Of The Catalytic Domain Of Huma... 25 9.5
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 127 bits (318), Expect = 1e-30
Identities = 76/221 (34%), Positives = 129/221 (57%), Gaps = 4/221 (1%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGL 61
+ VL++ED+ +LA+ ++E L + V + G A + +D+++LD+ LP DG
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDGW 62
Query: 62 EVCRRISKQK-HIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120
E+ + + + P++ +A SDVE ++K L+ GADDYLPKP+D +EL+AR+++L+RR
Sbjct: 63 EILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRR-- 120
Query: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIES 180
K E S +D +++ Y K++DLT+ EY+IL L+ K V ++E +
Sbjct: 121 KSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHL 180
Query: 181 ESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGY 221
S + E + + I LR K++K K+ + I +VRGIGY
Sbjct: 181 WSFDDEVFSDVLRSHIKNLRKKVDKGFKK-KIIHTVRGIGY 220
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 93.2 bits (230), Expect = 2e-20
Identities = 45/126 (35%), Positives = 81/126 (63%), Gaps = 1/126 (0%)
Query: 3 EVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLE 62
++L+++D+ + L L + G V + + A T+ DL++LD+ LP LDG+E
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 64
Query: 63 VCRRISKQKHI-PIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSHK 121
VC+++ +QK + PI++ +A+ + DK+ L+ GADDY+ KP+ P+E+ AR++++LRRS
Sbjct: 65 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 124
Query: 122 KEEVSE 127
+ SE
Sbjct: 125 RAPSSE 130
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
Length = 127
Score = 84.3 bits (207), Expect = 1e-17
Identities = 39/118 (33%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
+L++ED+ + E + L Q+G ++ + ++ N DL+LLD LP G++
Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64
Query: 64 CRRISKQ---KHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRR 118
+ + ++ + IP+++ +AR + ED+++ L+ GADDY+ KP+ PKEL+ARI++++RR
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 72.4 bits (176), Expect = 4e-14
Identities = 41/122 (33%), Positives = 72/122 (58%), Gaps = 5/122 (4%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
V +++DD + L L G+ T ++ ++A ++ D+LL D+ +P +DGL +
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 64 CRRISKQKH--IPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSHK 121
++I KQ+H +P+II +A SD++ + A GA DYLPKP+D E +A ++ + SH
Sbjct: 66 LKQI-KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--SHY 122
Query: 122 KE 123
+E
Sbjct: 123 QE 124
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 72.4 bits (176), Expect = 4e-14
Identities = 41/122 (33%), Positives = 72/122 (58%), Gaps = 5/122 (4%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
V +++DD + L L G+ T ++ ++A ++ D+LL D+ +P +DGL +
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 64 CRRISKQKH--IPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSHK 121
++I KQ+H +P+II +A SD++ + A GA DYLPKP+D E +A ++ + SH
Sbjct: 66 LKQI-KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--SHY 122
Query: 122 KE 123
+E
Sbjct: 123 QE 124
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 69.7 bits (169), Expect = 3e-13
Identities = 40/122 (32%), Positives = 71/122 (57%), Gaps = 5/122 (4%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
V +++DD + L L G+ T ++ ++A ++ D+LL + +P +DGL +
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSXIRMPGMDGLAL 65
Query: 64 CRRISKQKH--IPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSHK 121
++I KQ+H +P+II +A SD++ + A GA DYLPKP+D E +A ++ + SH
Sbjct: 66 LKQI-KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI--SHY 122
Query: 122 KE 123
+E
Sbjct: 123 QE 124
>pdb|1ODD| Ompr C-Terminal Domain (Ompr-C) From Escherichia Coli
Length = 118
Score = 57.4 bits (137), Expect = 1e-09
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 134 FRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSID 193
F+++ +RE++ ++ + LT E+ +L L+S SR+ + + + +SID
Sbjct: 22 FKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSID 81
Query: 194 VIIGRLRSKIEKNPKQPQYIISVRGIGY 221
V I RLR +E++P P+YI +V G+GY
Sbjct: 82 VQISRLRRMVEEDPAHPRYIQTVWGLGY 109
>pdb|1OPC| Ompr Dna-Binding Domain, Escherichia Coli
Length = 110
Score = 57.4 bits (137), Expect = 1e-09
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 134 FRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSID 193
F+++ +RE++ ++ + LT E+ +L L+S SR+ + + + +SID
Sbjct: 14 FKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSID 73
Query: 194 VIIGRLRSKIEKNPKQPQYIISVRGIGY 221
V I RLR +E++P P+YI +V G+GY
Sbjct: 74 VQISRLRRMVEEDPAHPRYIQTVWGLGY 101
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL| The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 55.8 bits (133), Expect = 4e-09
Identities = 40/128 (31%), Positives = 64/128 (49%), Gaps = 5/128 (3%)
Query: 37 GISAANTQNYDLLLLDLTLPNLDGLEVCRRI-SKQKHIPIIISSARSDVEDKIKALDYGA 95
GI A + + DL+LLDL +P ++GLE ++ K I++ S + ED + AL GA
Sbjct: 43 GIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGA 102
Query: 96 DDYLPKPYDPKELLARIQSLLRRSHKKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRA 155
D YL K +P++LL + E P A R ++ + E +++ LT
Sbjct: 103 DGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQ----LTPR 158
Query: 156 EYEILSLL 163
E +IL L+
Sbjct: 159 ERDILKLI 166
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 53.9 bits (128), Expect = 1e-08
Identities = 31/125 (24%), Positives = 65/125 (51%), Gaps = 4/125 (3%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
V +I+DD +L + + + L G V+++ ++ + +++ D+ +P +DGL +
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLAL 65
Query: 64 CRRI-SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSHKK 122
R+I + +P+I+ + D+ ++A+ GA D++ KP+ L +QS R K+
Sbjct: 66 FRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL---VQSARRAEEKR 122
Query: 123 EEVSE 127
V E
Sbjct: 123 RLVME 127
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 53.5 bits (127), Expect = 2e-08
Identities = 31/125 (24%), Positives = 65/125 (51%), Gaps = 4/125 (3%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
V +I+DD +L + + + L G V+++ ++ + +++ D+ +P +DGL +
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLAL 65
Query: 64 CRRI-SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSHKK 122
R+I + +P+I+ + D+ ++A+ GA D++ KP+ L +QS R K+
Sbjct: 66 FRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL---VQSARRAEKKR 122
Query: 123 EEVSE 127
V E
Sbjct: 123 RLVME 127
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 50.4 bits (119), Expect = 2e-07
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D+ + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++++A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 116 LRR 118
+
Sbjct: 120 FEK 122
>pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 48.9 bits (115), Expect = 5e-07
Identities = 27/111 (24%), Positives = 59/111 (52%), Gaps = 1/111 (0%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
V +++D+ + + L+ L +G V + ++ A +L+ DL +P++ G+E+
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVEL 65
Query: 64 CRRISKQK-HIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQ 113
R + K +IP I+ + DV ++A+ GA D++ KP++ ++ I+
Sbjct: 66 LRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIE 116
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 48.5 bits (114), Expect = 6e-07
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N + ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIICDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I S +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 48.5 bits (114), Expect = 6e-07
Identities = 26/115 (22%), Positives = 59/115 (50%), Gaps = 1/115 (0%)
Query: 3 EVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLE 62
++L+++D + L+E + G + + DL+LLD+ +P +DG+E
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64
Query: 63 VCRRISK-QKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLL 116
+ +R+ ++I +II +A +++ ++ + GA + KP+D E+ ++ L
Sbjct: 65 ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 48.5 bits (114), Expect = 6e-07
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D+ + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 116 LRR 118
+
Sbjct: 120 FEK 122
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 48.5 bits (114), Expect = 6e-07
Identities = 27/105 (25%), Positives = 55/105 (51%), Gaps = 4/105 (3%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIH--VTNYDEPYTGISAANTQNYDLLLLDLTLPNLD 59
I VL ++D + + ++E + H V +P N D+L LD+ +P +D
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMD 63
Query: 60 GLEVCRRISKQKHIPIIISSARS--DVEDKIKALDYGADDYLPKP 102
GL+ ++ + + +P+++ S+ + E ++AL+ GA D++ KP
Sbjct: 64 GLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 48.1 bits (113), Expect = 8e-07
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N + ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I S +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 48.1 bits (113), Expect = 8e-07
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLL-QHGIHVTNYDEPYTG---ISAANTQNYDLLLLDLTLPN 57
I+V + +D+ EL L E++ Q + V Y G + + D+LLLD+ +P+
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIG--TAYNGQDCLQMLEEKRPDILLLDIIMPH 60
Query: 58 LDGLEVCRRI-SKQKHIPIIISSARSDVEDKI-KALDYGADDYLPKPYDPKELLARIQSL 115
LDGL V RI + +H P +I ED KA++ GA ++ KP+D + L I+ +
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 48.1 bits (113), Expect = 8e-07
Identities = 26/115 (22%), Positives = 59/115 (50%), Gaps = 1/115 (0%)
Query: 3 EVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLE 62
++L+++D + L+E + G + + DL+LLD+ +P +DG+E
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 62
Query: 63 VCRRISK-QKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLL 116
+ +R+ ++I +II +A +++ ++ + GA + KP+D E+ ++ L
Sbjct: 63 ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 48.1 bits (113), Expect = 8e-07
Identities = 26/115 (22%), Positives = 59/115 (50%), Gaps = 1/115 (0%)
Query: 3 EVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLE 62
++L+++D + L+E + G + + DL+LLD+ +P +DG+E
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64
Query: 63 VCRRISK-QKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLL 116
+ +R+ ++I +II +A +++ ++ + GA + KP+D E+ ++ L
Sbjct: 65 ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 48.1 bits (113), Expect = 8e-07
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 47.8 bits (112), Expect = 1e-06
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 116 LRR 118
+
Sbjct: 124 FEK 126
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 47.8 bits (112), Expect = 1e-06
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 47.8 bits (112), Expect = 1e-06
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 47.8 bits (112), Expect = 1e-06
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 47.8 bits (112), Expect = 1e-06
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 116 LRR 118
+
Sbjct: 124 FEK 126
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 47.4 bits (111), Expect = 1e-06
Identities = 32/124 (25%), Positives = 62/124 (49%), Gaps = 10/124 (8%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKAL-DYGADDYLPKPYDPKELLARIQS 114
DGLE+ + I +P+++ +A +D E+ IKAL GA Y+ KP+ L ++
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAEN-IKALAQAGASGYVVKPFTAATLEEKLNK 122
Query: 115 LLRR 118
+ +
Sbjct: 123 IFEK 126
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 46.6 bits (109), Expect = 2e-06
Identities = 29/123 (23%), Positives = 58/123 (46%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 46.6 bits (109), Expect = 2e-06
Identities = 29/123 (23%), Positives = 58/123 (46%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L++ D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 64
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 116 LRR 118
+
Sbjct: 125 FEK 127
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 46.2 bits (108), Expect = 3e-06
Identities = 29/119 (24%), Positives = 55/119 (45%), Gaps = 7/119 (5%)
Query: 6 MIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNLDGLE 62
++ DD + LL+ + N +E G+ A N Y ++ D +PN+DGLE
Sbjct: 10 LVVDDFSTGRRIVRNLLKE-LGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLE 68
Query: 63 VCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRR 118
+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ + +
Sbjct: 69 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 127
>pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 46.2 bits (108), Expect = 3e-06
Identities = 26/111 (23%), Positives = 58/111 (51%), Gaps = 1/111 (0%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
V +++D+ + + L+ L +G V + ++ A +L+ L +P++ G+E+
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTXLRMPDMSGVEL 65
Query: 64 CRRISKQK-HIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQ 113
R + K +IP I+ + DV ++A+ GA D++ KP++ ++ I+
Sbjct: 66 LRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIE 116
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 45.8 bits (107), Expect = 4e-06
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA ++ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 45.4 bits (106), Expect = 5e-06
Identities = 29/123 (23%), Positives = 58/123 (46%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 116 LRR 118
+
Sbjct: 124 FEK 126
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 45.4 bits (106), Expect = 5e-06
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLL-QHGIHVTNYDEPYTG---ISAANTQNYDLLLLDLTLPN 57
I+V + +D+ EL L E++ Q + V Y G + + D+LLL + +P+
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIG--TAYNGQDCLQMLEEKRPDILLLXIIMPH 60
Query: 58 LDGLEVCRRI-SKQKHIPIIISSARSDVEDKI-KALDYGADDYLPKPYDPKELLARIQSL 115
LDGL V RI + +H P +I ED KA++ GA ++ KP+D + L I+ +
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
>pdb|1TMY| Chey From Thermotoga Maritima (Apo-I)
pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|2TMY| Chey From Thermotoga Maritima (Apo-Ii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (Mg-Iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (Mg-Iv)
Length = 120
Score = 45.4 bits (106), Expect = 5e-06
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 4 VLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAANTQNY---DLLLLDLTLPNLDG 60
VL+++D + L + + + G V E G A D++ +D+T+P ++G
Sbjct: 5 VLIVDDAAFMRMMLKDIITKAGYEVAG--EATNGREAVEKYKELKPDIVTMDITMPEMNG 62
Query: 61 LEVCRRISK-QKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
++ + I K + II+ SA I+A+ GA D++ KP+ P ++ + +
Sbjct: 63 IDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 45.1 bits (105), Expect = 7e-06
Identities = 28/123 (22%), Positives = 58/123 (46%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++ + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 45.1 bits (105), Expect = 7e-06
Identities = 28/123 (22%), Positives = 58/123 (46%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 44.7 bits (104), Expect = 9e-06
Identities = 28/123 (22%), Positives = 58/123 (46%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ D +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ A + E+ I A GA ++ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 44.7 bits (104), Expect = 9e-06
Identities = 28/123 (22%), Positives = 58/123 (46%), Gaps = 8/123 (6%)
Query: 2 IEVLMIEDDIELAEFLSEFLLQHGIHVTNYDEPYTGISAAN---TQNYDLLLLDLTLPNL 58
++ L+++D + + L + G + N +E G+ A N Y ++ +PN+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISAWNMPNM 62
Query: 59 DGLEVCRRI---SKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSL 115
DGLE+ + I +P+++ +A + E+ I A GA Y+ KP+ L ++ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 116 LRR 118
+
Sbjct: 123 FEK 125
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 44.7 bits (104), Expect = 9e-06
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 30 NYDEPYTGISAAN---TQNYDLLLLDLTLPNLDGLEVCRRI---SKQKHIPIIISSARSD 83
N +E G+ A N Y ++ D +PN+DGLE+ + I +P+++ +A +
Sbjct: 30 NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAK 89
Query: 84 VEDKIKALDYGADDYLPKPYDPKELLARIQSLLRR 118
E+ I A GA Y+ KP+ L ++ + +
Sbjct: 90 KENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 124
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 43.5 bits (101), Expect = 2e-05
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 30 NYDEPYTGISAAN---TQNYDLLLLDLTLPNLDGLEVCRRI---SKQKHIPIIISSARSD 83
N ++ G+ A N Y ++ D +PN+DGLE+ + I +P+++ +A +
Sbjct: 31 NVEDAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAK 90
Query: 84 VEDKIKALDYGADDYLPKPYDPKELLARIQSLLRR 118
E+ I A GA Y+ KP+ L ++ + +
Sbjct: 91 KENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 43.5 bits (101), Expect = 2e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 42 NTQNYDLLLLDLTLPNLDGLEVCRRISKQ---KHIPIIISSARSDVEDKIKALDYGADDY 98
N+ +L+LLDL LP DG EV I + K IP+++ + + +D I + + + Y
Sbjct: 58 NSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCY 117
Query: 99 LPKPYDPKELLARIQSL 115
L K + K+L +Q +
Sbjct: 118 LTKSRNLKDLFKXVQGI 134
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 43.5 bits (101), Expect = 2e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 42 NTQNYDLLLLDLTLPNLDGLEVCRRISKQ---KHIPIIISSARSDVEDKIKALDYGADDY 98
N+ +L+LLDL LP DG EV I + K IP+++ + + +D I + + + Y
Sbjct: 58 NSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCY 117
Query: 99 LPKPYDPKELLARIQSL 115
L K + K+L +Q +
Sbjct: 118 LTKSRNLKDLFKMVQGI 134
>pdb|1GXP|A Chain A, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|B Chain B, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|E Chain E, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|F Chain F, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXQ|A Chain A, Crystal Structure Of The Phob Effector Domain
Length = 106
Score = 39.7 bits (91), Expect = 3e-04
Identities = 24/87 (27%), Positives = 44/87 (49%), Gaps = 1/87 (1%)
Query: 136 VDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVI 195
+D S V E+ L++ E+++L ++ V+SRE + N ++++DV
Sbjct: 16 LDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVH 75
Query: 196 IGRLRSKIEKNPKQPQYIISVRGIGYK 222
I RLR +E + + +VRG GY+
Sbjct: 76 IRRLRKALEPG-GHDRMVQTVRGTGYR 101
>pdb|1QQI|A Chain A, Solution Structure Of The Dna-Binding And Transactivation
Domain Of Phob From Escherichia Coli
Length = 104
Score = 39.7 bits (91), Expect = 3e-04
Identities = 24/87 (27%), Positives = 44/87 (49%), Gaps = 1/87 (1%)
Query: 136 VDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVI 195
+D S V E+ L++ E+++L ++ V+SRE + N ++++DV
Sbjct: 14 LDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVH 73
Query: 196 IGRLRSKIEKNPKQPQYIISVRGIGYK 222
I RLR +E + + +VRG GY+
Sbjct: 74 IRRLRKALEPG-GHDRMVQTVRGTGYR 99
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 33.9 bits (76), Expect = 0.016
Identities = 24/105 (22%), Positives = 55/105 (51%), Gaps = 8/105 (7%)
Query: 5 LMIEDDIELAEFLSEFLLQH-GIHVTNYDEPYTGISAANTQNYDLLLLDLTLPNLDGLEV 63
+++ D+ ++ +++ LL H G VT + + + + ++ +D+ +P ++ ++
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE-HKVVFMDVCMPGVENYQI 68
Query: 64 CRRI----SKQKHI-PIIIS-SARSDVEDKIKALDYGADDYLPKP 102
RI +KQ+H P++++ S +D K K + +G D L KP
Sbjct: 69 ALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKP 113
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 26.2 bits (56), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (50%)
Query: 61 LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYL 99
+E+ RR++ IP+I S VE +A GAD L
Sbjct: 187 VELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVL 225
>pdb|1BML|C Chain C, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|D Chain D, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 362
Score = 24.6 bits (52), Expect = 9.5
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 66 RISKQKHIPIIISSARSDVEDKIKALDYGADD-YLPKPYDPK--------------ELLA 110
R+ K PI + DVE ++ DD + P D K ELLA
Sbjct: 131 RVRPYKEKPIQNQAKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLA 190
Query: 111 RIQSLLRRSHKKEEVSEPGDANIFRVDKD 139
+ QS+L ++H + E D++I D D
Sbjct: 191 QAQSILNKTHPGYTIYE-RDSSIVTHDND 218
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.137 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,228,893
Number of Sequences: 13198
Number of extensions: 46892
Number of successful extensions: 195
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 52
length of query: 225
length of database: 2,899,336
effective HSP length: 85
effective length of query: 140
effective length of database: 1,777,506
effective search space: 248850840
effective search space used: 248850840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)