BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644796|ref|NP_206966.1| hypothetical protein
[Helicobacter pylori 26695]
(157 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homo... 29 0.22
pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase Holoen... 28 0.37
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of B... 27 0.82
pdb|1TUX| High Resolution Crystal Structure Of A Thermost... 27 0.82
pdb|1G8Z|D Chain D, His57ala Mutant Of Cholera Toxin B-Pena... 27 0.82
pdb|1K8K|G Chain G, Crystal Structure Of Arp23 COMPLEX 26 1.8
pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase... 25 3.1
pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With... 25 3.1
pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate ... 25 3.1
pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Sugge... 25 3.1
pdb|1RTS|B Chain B, Thymidylate Synthase From Rat In Ternar... 25 3.1
pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed Wi... 25 3.1
pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus ... 25 3.1
pdb|2CHB|D Chain D, Cholera Toxin B-Pentamer Complexed With... 25 4.1
pdb|1JR0|D Chain D, Cholera Toxin B-Pentamer With Ligand Bm... 25 4.1
pdb|3CHB|D Chain D, Cholera Toxin B-Pentamer Complexed With... 25 4.1
pdb|1JQY|D Chain D, Heat-Labile Enterotoxin B-Pentamer With... 25 5.3
pdb|1XTC|D Chain D, Cholera Toxin >gi|1827851|pdb|1XTC|E Ch... 25 5.3
pdb|1CHQ|D Chain D, Mol_id: 1; Molecule: Cholera Toxin B Pe... 24 7.0
pdb|1AB4| 59kda Fragment Of Gyrase A From E. Coli 24 7.0
pdb|1LTR|F Chain F, Crystal Structure Of The B Subunit Of H... 24 9.1
pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomeras... 24 9.1
pdb|1B44|E Chain E, Crystal Structure Of The B Subunit Of H... 24 9.1
pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-... 24 9.1
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 29.3 bits (64), Expect = 0.22
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 78 EAPEIITEEIAQENPTQVLISNERVFLK 105
E ++I E++AQ N ++LI N + FLK
Sbjct: 142 EKVDVIYEDVAQPNQAEILIKNAKWFLK 169
>pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 438
Score = 28.5 bits (62), Expect = 0.37
Identities = 25/101 (24%), Positives = 47/101 (45%), Gaps = 8/101 (7%)
Query: 30 DAAQKTPSFFKTPPYLQNTLDPQNANVPLEPKNAAKIETQEKITEEKEEAPEIITEEIAQ 89
D + P + P L++ DP + PLE A + +E + EE+EE E+ +++
Sbjct: 39 DLPEPDPELLASEPELEDLADPLDLEGPLE----ADLLPEEGLLEEEEE--ELSLPKVST 92
Query: 90 ENPTQVLISNERVFLKGLLERTLVLFKGMQALEEKEAMKRL 130
+P + + LE + L + ++ E EA+K+L
Sbjct: 93 SDPVRQYLHEIGQVPLLTLEEEIDLARKVE--EGMEAIKKL 131
Score = 27.3 bits (59), Expect = 0.82
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 59 EPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGM 118
EP+ ++E E + + E PE++ E E+ L L+G LE L+ +G+
Sbjct: 24 EPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPL------DLEGPLEADLLPEEGL 77
Query: 119 QALEEKE----AMKRLDLVARFL----QYQLSTLEKRLE 149
EE+E + D V ++L Q L TLE+ ++
Sbjct: 78 LEEEEEELSLPKVSTSDPVRQYLHEIGQVPLLTLEEEID 116
>pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 27.3 bits (59), Expect = 0.82
Identities = 21/92 (22%), Positives = 40/92 (42%), Gaps = 15/92 (16%)
Query: 20 KMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEPKNAAK-------------- 65
K KTI+ N D ++ P F +L+ + +NA + NA K
Sbjct: 91 KFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSI 150
Query: 66 -IETQEKITEEKEEAPEIITEEIAQENPTQVL 96
I+T E++ E + +I+ + A + T+++
Sbjct: 151 DIDTIERVEELVKAHVDILVIDSAHGHSTRII 182
>pdb|1TUX| High Resolution Crystal Structure Of A Thermostable Xylanase From
Thermoascus Aurantiacus
Length = 301
Score = 27.3 bits (59), Expect = 0.82
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 3 GRMELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKT----PPYLQNTLDPQNANVPL 58
G++ ++++E NE + +T+ NN P F+T P + ++ N +
Sbjct: 121 GKIRAWDVVNEAFNEDGSLRQTVFNNVIGEDYIPIAFRTARAADPNAKLYINDYNLDSAS 180
Query: 59 EPKNAAKIETQEK 71
+PK +A ++ +K
Sbjct: 181 KPKTSAIVKRVKK 193
>pdb|1G8Z|D Chain D, His57ala Mutant Of Cholera Toxin B-Penatmer
pdb|1G8Z|E Chain E, His57ala Mutant Of Cholera Toxin B-Penatmer
pdb|1G8Z|F Chain F, His57ala Mutant Of Cholera Toxin B-Penatmer
pdb|1G8Z|G Chain G, His57ala Mutant Of Cholera Toxin B-Penatmer
pdb|1G8Z|H Chain H, His57ala Mutant Of Cholera Toxin B-Penatmer
Length = 103
Score = 27.3 bits (59), Expect = 0.82
Identities = 22/83 (26%), Positives = 41/83 (48%), Gaps = 16/83 (19%)
Query: 80 PEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK----------GMQALE-E 123
P+ IT+ A+ + TQ+ N+++F L G E ++ FK G QA++ +
Sbjct: 2 PQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQAIDSQ 61
Query: 124 KEAMKRLDLVARFLQYQLSTLEK 146
K+A++R+ R + +EK
Sbjct: 62 KKAIERMKDTLRIAYLTEAKVEK 84
>pdb|1K8K|G Chain G, Crystal Structure Of Arp23 COMPLEX
Length = 151
Score = 26.2 bits (56), Expect = 1.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 2 AGRMELKNIISETLNEIEKMAKTIDNN 28
AG + LK +IS N+IEK +++D N
Sbjct: 75 AGSIVLKVLISFKANDIEKAVQSLDKN 101
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests
Advantages Of Chemotherapy With Noncompetitive
Inhibitors
Length = 313
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 96 LISNERVFLKGLLERTLVLFKGMQALEE 123
L++ +RVF KG+LE L KG +E
Sbjct: 73 LLTTKRVFWKGVLEELLWFIKGSTNAKE 100
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|B Chain B, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|C Chain C, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|D Chain D, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|A Chain A, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|B Chain B, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|C Chain C, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|D Chain D, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
Length = 313
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 96 LISNERVFLKGLLERTLVLFKGMQALEE 123
L++ +RVF KG+LE L KG +E
Sbjct: 73 LLTTKRVFWKGVLEELLWFIKGSTNAKE 100
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase
pdb|1HZW|B Chain B, Crystal Structure Of Human Thymidylate Synthase
pdb|1I00|A Chain A, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
pdb|1I00|B Chain B, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
Length = 290
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 96 LISNERVFLKGLLERTLVLFKGMQALEE 123
L++ +RVF KG+LE L KG +E
Sbjct: 50 LLTTKRVFWKGVLEELLWFIKGSTNAKE 77
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of
Chemotherapy With Noncompetitive Inhibitors
Length = 355
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 96 LISNERVFLKGLLERTLVLFKGMQALEE 123
L++ +RVF KG+LE L KG +E
Sbjct: 115 LLTTKRVFWKGVLEELLWFIKGSTNAKE 142
>pdb|1RTS|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|C Chain C, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|D Chain D, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
Length = 307
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 96 LISNERVFLKGLLERTLVLFKGMQALEE 123
L++ +RVF KG+LE L KG +E
Sbjct: 67 LLTTKRVFWKGVLEELLWFIKGSTNAKE 94
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|B Chain B, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|C Chain C, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|D Chain D, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
Length = 288
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 96 LISNERVFLKGLLERTLVLFKGMQALEE 123
L++ +RVF KG+LE L KG +E
Sbjct: 48 LLTTKRVFWKGVLEELLWFIKGSTNAKE 75
>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
Length = 185
Score = 25.4 bits (54), Expect = 3.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 3 GRMELKNIISETLNEIEKMAKTIDNNFDAAQK 34
GR+ ++NI E L++++K+AK + + D ++
Sbjct: 125 GRVAIRNIRREALDKLKKLAKELHLSEDETKR 156
>pdb|2CHB|D Chain D, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|2CHB|E Chain E, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|2CHB|F Chain F, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|2CHB|G Chain G, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|2CHB|H Chain H, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
Length = 104
Score = 25.0 bits (53), Expect = 4.1
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 16/83 (19%)
Query: 80 PEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK----------GMQALE-E 123
P+ IT+ A+ + TQ+ N+++F L G E ++ FK G Q ++ +
Sbjct: 3 PQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQ 62
Query: 124 KEAMKRLDLVARFLQYQLSTLEK 146
K+A++R+ R + +EK
Sbjct: 63 KKAIERMKDTLRIAYLTEAKVEK 85
>pdb|1JR0|D Chain D, Cholera Toxin B-Pentamer With Ligand Bmsc-0011
pdb|1JR0|E Chain E, Cholera Toxin B-Pentamer With Ligand Bmsc-0011
pdb|1JR0|F Chain F, Cholera Toxin B-Pentamer With Ligand Bmsc-0011
pdb|1JR0|G Chain G, Cholera Toxin B-Pentamer With Ligand Bmsc-0011
pdb|1JR0|H Chain H, Cholera Toxin B-Pentamer With Ligand Bmsc-0011
pdb|1LLR|D Chain D, Cholera Toxin B-Pentamer With Ligand Bmsc-0012
pdb|1LLR|E Chain E, Cholera Toxin B-Pentamer With Ligand Bmsc-0012
pdb|1LLR|F Chain F, Cholera Toxin B-Pentamer With Ligand Bmsc-0012
pdb|1LLR|G Chain G, Cholera Toxin B-Pentamer With Ligand Bmsc-0012
pdb|1LLR|H Chain H, Cholera Toxin B-Pentamer With Ligand Bmsc-0012
pdb|1EEI|D Chain D, Cholera Toxin B-Pentamer Complexed With Metanitrophenyl-
Alpha-D-Galactose
pdb|1EEI|E Chain E, Cholera Toxin B-Pentamer Complexed With Metanitrophenyl-
Alpha-D-Galactose
pdb|1EEI|F Chain F, Cholera Toxin B-Pentamer Complexed With Metanitrophenyl-
Alpha-D-Galactose
pdb|1EEI|G Chain G, Cholera Toxin B-Pentamer Complexed With Metanitrophenyl-
Alpha-D-Galactose
pdb|1EEI|H Chain H, Cholera Toxin B-Pentamer Complexed With Metanitrophenyl-
Alpha-D-Galactose
pdb|1FGB|D Chain D, Toxin
pdb|1FGB|E Chain E, Toxin
pdb|1FGB|F Chain F, Toxin
pdb|1FGB|G Chain G, Toxin
pdb|1FGB|H Chain H, Toxin
Length = 103
Score = 25.0 bits (53), Expect = 4.1
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 16/83 (19%)
Query: 80 PEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK----------GMQALE-E 123
P+ IT+ A+ + TQ+ N+++F L G E ++ FK G Q ++ +
Sbjct: 2 PQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQ 61
Query: 124 KEAMKRLDLVARFLQYQLSTLEK 146
K+A++R+ R + +EK
Sbjct: 62 KKAIERMKDTLRIAYLTEAKVEK 84
>pdb|3CHB|D Chain D, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|3CHB|E Chain E, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|3CHB|F Chain F, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|3CHB|G Chain G, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
pdb|3CHB|H Chain H, Cholera Toxin B-Pentamer Complexed With Gm1
Pentasaccharide
Length = 104
Score = 25.0 bits (53), Expect = 4.1
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 16/83 (19%)
Query: 80 PEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK----------GMQALE-E 123
P+ IT+ A+ + TQ+ N+++F L G E ++ FK G Q ++ +
Sbjct: 3 PQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQ 62
Query: 124 KEAMKRLDLVARFLQYQLSTLEK 146
K+A++R+ R + +EK
Sbjct: 63 KKAIERMKDTLRIAYLTEAKVEK 85
>pdb|1JQY|D Chain D, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|E Chain E, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|F Chain F, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|G Chain G, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|H Chain H, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|L Chain L, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|M Chain M, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|N Chain N, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|O Chain O, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|P Chain P, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|V Chain V, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|W Chain W, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|X Chain X, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|Y Chain Y, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1JQY|Z Chain Z, Heat-Labile Enterotoxin B-Pentamer With Ligand Bmsc-0010
pdb|1DJR|F Chain F, Heat-Labile Enterotoxin B-Pentamer Complexed With M-
Carboxyphenyl-Alpha-D-Galactose
pdb|1DJR|H Chain H, Heat-Labile Enterotoxin B-Pentamer Complexed With M-
Carboxyphenyl-Alpha-D-Galactose
pdb|1EFI|D Chain D, Heat-Labile Enterotoxin B-Pentamer Complexed With Para-
Aminophenyl-Alpha-D-Galactopyranoside
pdb|1EFI|E Chain E, Heat-Labile Enterotoxin B-Pentamer Complexed With Para-
Aminophenyl-Alpha-D-Galactopyranoside
pdb|1EFI|F Chain F, Heat-Labile Enterotoxin B-Pentamer Complexed With Para-
Aminophenyl-Alpha-D-Galactopyranoside
pdb|1EFI|G Chain G, Heat-Labile Enterotoxin B-Pentamer Complexed With Para-
Aminophenyl-Alpha-D-Galactopyranoside
pdb|1EFI|H Chain H, Heat-Labile Enterotoxin B-Pentamer Complexed With Para-
Aminophenyl-Alpha-D-Galactopyranoside
pdb|1LT5|D Chain D, Heat-Labile Enterotoxin B-Pentamer Complexed With
Thiodigalactoside
pdb|1LT5|E Chain E, Heat-Labile Enterotoxin B-Pentamer Complexed With
Thiodigalactoside
pdb|1LT5|F Chain F, Heat-Labile Enterotoxin B-Pentamer Complexed With
Thiodigalactoside
pdb|1LT5|G Chain G, Heat-Labile Enterotoxin B-Pentamer Complexed With
Thiodigalactoside
pdb|1LT5|H Chain H, Heat-Labile Enterotoxin B-Pentamer Complexed With
Thiodigalactoside
pdb|1EEF|D Chain D, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|E Chain E, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|F Chain F, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|G Chain G, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|H Chain H, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|L Chain L, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|M Chain M, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|N Chain N, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|O Chain O, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1EEF|P Chain P, Heat-Labile Enterotoxin B-Pentamer Complexed With Bound
Ligand Pepg
pdb|1FD7|D Chain D, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|E Chain E, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|F Chain F, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|G Chain G, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|H Chain H, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|L Chain L, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|M Chain M, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|N Chain N, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|O Chain O, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1FD7|P Chain P, Heat-Labile Enterotoxin B-Pentamer With Bound Ligand
Bmsc001
pdb|1LTS|D Chain D, Heat-Labile Enterotoxin (Lt)
pdb|1LTS|E Chain E, Heat-Labile Enterotoxin (Lt)
pdb|1LTS|F Chain F, Heat-Labile Enterotoxin (Lt)
pdb|1LTS|G Chain G, Heat-Labile Enterotoxin (Lt)
pdb|1LTS|H Chain H, Heat-Labile Enterotoxin (Lt)
pdb|1LT3|D Chain D, Heat-Labile Enterotoxin Double Mutant N40cG166C
pdb|1LT3|E Chain E, Heat-Labile Enterotoxin Double Mutant N40cG166C
pdb|1LT3|F Chain F, Heat-Labile Enterotoxin Double Mutant N40cG166C
pdb|1LT3|G Chain G, Heat-Labile Enterotoxin Double Mutant N40cG166C
pdb|1LT3|H Chain H, Heat-Labile Enterotoxin Double Mutant N40cG166C
pdb|1LT4|D Chain D, Heat-Labile Enterotoxin Mutant S63k
pdb|1LT4|E Chain E, Heat-Labile Enterotoxin Mutant S63k
pdb|1LT4|F Chain F, Heat-Labile Enterotoxin Mutant S63k
pdb|1LT4|G Chain G, Heat-Labile Enterotoxin Mutant S63k
pdb|1LT4|H Chain H, Heat-Labile Enterotoxin Mutant S63k
pdb|1LTI|D Chain D, Heat-Labile Enterotoxin (Lt-I) Complex With T-Antigen
pdb|1LTI|E Chain E, Heat-Labile Enterotoxin (Lt-I) Complex With T-Antigen
pdb|1LTI|F Chain F, Heat-Labile Enterotoxin (Lt-I) Complex With T-Antigen
pdb|1LTI|G Chain G, Heat-Labile Enterotoxin (Lt-I) Complex With T-Antigen
pdb|1LTI|H Chain H, Heat-Labile Enterotoxin (Lt-I) Complex With T-Antigen
pdb|1LT6|D Chain D, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|E Chain E, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|F Chain F, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|G Chain G, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|H Chain H, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|L Chain L, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|M Chain M, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|N Chain N, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|O Chain O, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LT6|P Chain P, Heat-Labile Enterotoxin B-Pentamer Complexed With
Metanitrophenylgalactoside
pdb|1LTA|D Chain D, Heat-Labile Enterotoxin (Lt) Complex With Galactose
pdb|1LTA|E Chain E, Heat-Labile Enterotoxin (Lt) Complex With Galactose
pdb|1LTA|F Chain F, Heat-Labile Enterotoxin (Lt) Complex With Galactose
pdb|1LTA|G Chain G, Heat-Labile Enterotoxin (Lt) Complex With Galactose
pdb|1LTA|H Chain H, Heat-Labile Enterotoxin (Lt) Complex With Galactose
pdb|1LTT|D Chain D, Heat-Labile Enterotoxin (Lt) Complex With Lactose
pdb|1LTT|E Chain E, Heat-Labile Enterotoxin (Lt) Complex With Lactose
pdb|1LTT|F Chain F, Heat-Labile Enterotoxin (Lt) Complex With Lactose
pdb|1LTT|G Chain G, Heat-Labile Enterotoxin (Lt) Complex With Lactose
pdb|1LTT|H Chain H, Heat-Labile Enterotoxin (Lt) Complex With Lactose
pdb|1LTG|D Chain D, Mol_id: 1; Molecule: Heat-Labile Enterotoxin; Chain: D, E,
F, G, H, A, C; Synonym: Lt; Engineered: Yes; Mutation:
Arg A 7 Lys
pdb|1LTG|E Chain E, Mol_id: 1; Molecule: Heat-Labile Enterotoxin; Chain: D, E,
F, G, H, A, C; Synonym: Lt; Engineered: Yes; Mutation:
Arg A 7 Lys
pdb|1LTG|F Chain F, Mol_id: 1; Molecule: Heat-Labile Enterotoxin; Chain: D, E,
F, G, H, A, C; Synonym: Lt; Engineered: Yes; Mutation:
Arg A 7 Lys
pdb|1LTG|G Chain G, Mol_id: 1; Molecule: Heat-Labile Enterotoxin; Chain: D, E,
F, G, H, A, C; Synonym: Lt; Engineered: Yes; Mutation:
Arg A 7 Lys
pdb|1LTG|H Chain H, Mol_id: 1; Molecule: Heat-Labile Enterotoxin; Chain: D, E,
F, G, H, A, C; Synonym: Lt; Engineered: Yes; Mutation:
Arg A 7 Lys
pdb|1HTL|D Chain D, Heat Labile Enterotoxin (Lt) Mutant With Val A 97 Replaced
By Lys (V(A 97)k) (Synchrotron X-Ray Diffraction)
pdb|1HTL|E Chain E, Heat Labile Enterotoxin (Lt) Mutant With Val A 97 Replaced
By Lys (V(A 97)k) (Synchrotron X-Ray Diffraction)
pdb|1HTL|F Chain F, Heat Labile Enterotoxin (Lt) Mutant With Val A 97 Replaced
By Lys (V(A 97)k) (Synchrotron X-Ray Diffraction)
pdb|1HTL|G Chain G, Heat Labile Enterotoxin (Lt) Mutant With Val A 97 Replaced
By Lys (V(A 97)k) (Synchrotron X-Ray Diffraction)
pdb|1HTL|H Chain H, Heat Labile Enterotoxin (Lt) Mutant With Val A 97 Replaced
By Lys (V(A 97)k) (Synchrotron X-Ray Diffraction)
pdb|1LTB|D Chain D, Heat-Labile Enterotoxin (Lt) (Partially Activated By
Trypsin Cleavage)
pdb|1LTB|E Chain E, Heat-Labile Enterotoxin (Lt) (Partially Activated By
Trypsin Cleavage)
pdb|1LTB|F Chain F, Heat-Labile Enterotoxin (Lt) (Partially Activated By
Trypsin Cleavage)
pdb|1LTB|G Chain G, Heat-Labile Enterotoxin (Lt) (Partially Activated By
Trypsin Cleavage)
pdb|1LTB|H Chain H, Heat-Labile Enterotoxin (Lt) (Partially Activated By
Trypsin Cleavage)
pdb|1DJR|D Chain D, Heat-Labile Enterotoxin B-Pentamer Complexed With M-
Carboxyphenyl-Alpha-D-Galactose
pdb|1DJR|G Chain G, Heat-Labile Enterotoxin B-Pentamer Complexed With M-
Carboxyphenyl-Alpha-D-Galactose
pdb|1DJR|E Chain E, Heat-Labile Enterotoxin B-Pentamer Complexed With M-
Carboxyphenyl-Alpha-D-Galactose
Length = 103
Score = 24.6 bits (52), Expect = 5.3
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 79 APEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFKGMQALE-EKEAMKRLDL 132
AP+ ITE ++ TQ+ N+++ + G E ++ FK + + E + +D
Sbjct: 1 APQTITELCSEYRNTQIYTINDKILSYTESMAGKREMVIITFKSGETFQVEVPGSQHIDS 60
Query: 133 VARFLQYQLSTL 144
+ ++ TL
Sbjct: 61 QKKAIERMKDTL 72
>pdb|1XTC|D Chain D, Cholera Toxin
pdb|1XTC|E Chain E, Cholera Toxin
pdb|1XTC|F Chain F, Cholera Toxin
pdb|1XTC|G Chain G, Cholera Toxin
pdb|1XTC|H Chain H, Cholera Toxin
Length = 103
Score = 24.6 bits (52), Expect = 5.3
Identities = 13/42 (30%), Positives = 23/42 (53%), Gaps = 5/42 (11%)
Query: 80 PEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK 116
P+ IT+ A+ + TQ+ N+++F L G E ++ FK
Sbjct: 2 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFK 43
>pdb|1CHQ|D Chain D, Mol_id: 1; Molecule: Cholera Toxin B Pentamer; Chain: D,
E, F, G, H; Synonym: Choleragen; Engineered: Yes;
Mutation: R35d
pdb|1CHQ|E Chain E, Mol_id: 1; Molecule: Cholera Toxin B Pentamer; Chain: D,
E, F, G, H; Synonym: Choleragen; Engineered: Yes;
Mutation: R35d
pdb|1CHQ|F Chain F, Mol_id: 1; Molecule: Cholera Toxin B Pentamer; Chain: D,
E, F, G, H; Synonym: Choleragen; Engineered: Yes;
Mutation: R35d
pdb|1CHQ|G Chain G, Mol_id: 1; Molecule: Cholera Toxin B Pentamer; Chain: D,
E, F, G, H; Synonym: Choleragen; Engineered: Yes;
Mutation: R35d
pdb|1CHQ|H Chain H, Mol_id: 1; Molecule: Cholera Toxin B Pentamer; Chain: D,
E, F, G, H; Synonym: Choleragen; Engineered: Yes;
Mutation: R35d
Length = 103
Score = 24.3 bits (51), Expect = 7.0
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 16/83 (19%)
Query: 80 PEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK----------GMQALE-E 123
P+ IT+ A+ + TQ+ N+++F L G E ++ FK G Q ++ +
Sbjct: 2 PQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKDEMAIITFKNGATFQVEVPGSQHIDSQ 61
Query: 124 KEAMKRLDLVARFLQYQLSTLEK 146
K+A++R+ R + +EK
Sbjct: 62 KKAIERMKDTLRIAYLTEAKVEK 84
>pdb|1AB4| 59kda Fragment Of Gyrase A From E. Coli
Length = 477
Score = 24.3 bits (51), Expect = 7.0
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 5 MELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEPKNAA 64
+ L I E + ++EK +N+D +K P P + N L N + + A
Sbjct: 96 IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM--PTKIPNLL--VNGSSGIAVGMAT 151
Query: 65 KIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLER-------TLVLFKG 117
I P +TE I N I +E + ++GL+E T + G
Sbjct: 152 NI------------PPHNLTEVI---NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIING 196
Query: 118 MQALEE 123
+ +EE
Sbjct: 197 RRGIEE 202
>pdb|1LTR|F Chain F, Crystal Structure Of The B Subunit Of Human Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1LTR|D Chain D, Crystal Structure Of The B Subunit Of Human Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1LTR|E Chain E, Crystal Structure Of The B Subunit Of Human Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1LTR|G Chain G, Crystal Structure Of The B Subunit Of Human Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1LTR|H Chain H, Crystal Structure Of The B Subunit Of Human Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
Length = 113
Score = 23.9 bits (50), Expect = 9.1
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 79 APEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK----------GMQALE- 122
AP+ ITE ++ + TQ+ N+++ + G E ++ FK G Q ++
Sbjct: 1 APQSITELCSEYHNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDS 60
Query: 123 EKEAMKRLDLVARFLQYQLSTLEK 146
+K+A++R+ R + ++K
Sbjct: 61 QKKAIERMKDTLRITYLTETKIDK 84
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo
Sapiens
Length = 163
Score = 23.9 bits (50), Expect = 9.1
Identities = 11/15 (73%), Positives = 12/15 (79%)
Query: 69 QEKITEEKEEAPEII 83
QEKIT KEEA E+I
Sbjct: 75 QEKITRTKEEALELI 89
>pdb|1B44|E Chain E, Crystal Structure Of The B Subunit Of Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1B44|D Chain D, Crystal Structure Of The B Subunit Of Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1B44|F Chain F, Crystal Structure Of The B Subunit Of Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1B44|G Chain G, Crystal Structure Of The B Subunit Of Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
pdb|1B44|H Chain H, Crystal Structure Of The B Subunit Of Heat-Labile
Enterotoxin From E. Coli Carrying A Peptide With
Anti-Hsv Activity
Length = 129
Score = 23.9 bits (50), Expect = 9.1
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 79 APEIITEEIAQENPTQVLISNERVF-----LKGLLERTLVLFK----------GMQALE- 122
AP+ ITE ++ + TQ+ N+++ + G E ++ FK G Q ++
Sbjct: 1 APQSITELCSEYHNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDS 60
Query: 123 EKEAMKRLDLVARFLQYQLSTLEK 146
+K+A++R+ R + ++K
Sbjct: 61 QKKAIERMKDTLRITYLTETKIDK 84
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline
Recognition By Group Iv Ww Domains
Length = 167
Score = 23.9 bits (50), Expect = 9.1
Identities = 11/15 (73%), Positives = 12/15 (79%)
Query: 69 QEKITEEKEEAPEII 83
QEKIT KEEA E+I
Sbjct: 79 QEKITRTKEEALELI 93
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.310 0.128 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 761,476
Number of Sequences: 13198
Number of extensions: 27802
Number of successful extensions: 89
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 25
length of query: 157
length of database: 2,899,336
effective HSP length: 81
effective length of query: 76
effective length of database: 1,830,298
effective search space: 139102648
effective search space used: 139102648
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)