BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644797|ref|NP_206967.1| hypothetical protein
[Helicobacter pylori 26695]
         (87 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1E98|A  Chain A, Wild Type Human Thymidylate Kinase Comp...    26  0.65
pdb|1B89|A  Chain A, Clathrin Heavy Chain Proximal Leg Segme...    22  9.4
pdb|2SHP|A  Chain A, Tyrosine Phosphatase Shp-2 >gi|4558224|...    22  9.4

>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
           And Adp
          Length = 215

 Score = 26.2 bits (56), Expect = 0.65
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 12  YEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDAL 60
           YE   F E AL+ +  ++K T  + + +   KR+E + +       DA+
Sbjct: 154 YENGAFQERALRCFHQLMKDTTLNWKMVDASKRIEAVHEEIRVLSEDAI 202



>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
          Length = 449

 Score = 22.3 bits (46), Expect = 9.4
 Identities = 7/15 (46%), Positives = 12/15 (79%)

Query: 8   LANIYEEQGFFEEAL 22
           L N Y+++G+FEE +
Sbjct: 213 LINYYQDRGYFEELI 227



>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
 pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
          Length = 525

 Score = 22.3 bits (46), Expect = 9.4
 Identities = 13/44 (29%), Positives = 20/44 (44%)

Query: 14  EQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKH 57
           +QGF+EE   +     K   +  E  +Q  + +   KN  PF H
Sbjct: 244 KQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDH 287



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.318    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,668
Number of Sequences: 13198
Number of extensions: 17846
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 3
length of query: 87
length of database: 2,899,336
effective HSP length: 63
effective length of query: 24
effective length of database: 2,067,862
effective search space: 49628688
effective search space used: 49628688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)