BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644799|ref|NP_206969.1| hypothetical protein
[Helicobacter pylori 26695]
(253 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 33 0.041
pdb|1JFG|A Chain A, Trichodiene Synthase From Fusarium Spor... 32 0.054
pdb|1KIY|A Chain A, D100e Trichodiene Synthase >gi|20150817... 32 0.054
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 32 0.071
pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New F... 31 0.12
pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 31 0.12
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-T... 30 0.27
pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 30 0.35
pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Comp... 30 0.35
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 29 0.46
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 29 0.46
pdb|1DIP|A Chain A, The Solution Structure Of Porcine Delta... 29 0.60
pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase 28 0.78
pdb|1BPX|A Chain A, Human Dna Polymerase Beta Complexed Wit... 28 0.78
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 28 0.78
pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human U... 28 0.78
pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human U... 28 0.78
pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human U... 28 0.78
pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bo... 28 1.0
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 28 1.0
pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id:... 28 1.0
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 28 1.0
pdb|1LNR|T Chain T, Crystal Structure Of The Large Ribosoma... 28 1.3
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 27 2.3
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 27 2.3
pdb|1MTY|D Chain D, Methane Monooxygenase Hydroxylase From ... 27 3.0
pdb|1JQK|A Chain A, Crystal Structure Of Carbon Monoxide De... 27 3.0
pdb|1IT2|A Chain A, Hagfish Deoxy Hemoglobin >gi|18655671|p... 27 3.0
pdb|1B43|A Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|... 26 3.9
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 26 3.9
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 26 3.9
pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polym... 26 5.1
pdb|1KIL|E Chain E, Three-Dimensional Structure Of The Comp... 26 5.1
pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regula... 25 6.6
pdb|1L2N|A Chain A, Smt3 Solution Structure 25 6.6
pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-... 25 8.6
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 25 8.6
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 25 8.6
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 32.7 bits (73), Expect = 0.041
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 13 GDLENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYG 69
G+ E E E + EEA+ EA+E KE+ ++ EE +EE + T++ +KYG
Sbjct: 6 GEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREE---MRQTIR----DKYG 55
Score = 25.8 bits (55), Expect = 5.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 4 EELDALMNGGDLENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQ 56
EE A + E E + K EE +EE ++ +++ K+++KEE ++
Sbjct: 15 EEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVKEEPEAE 67
Score = 25.4 bits (54), Expect = 6.6
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 16 ENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKE 63
E A+E EE ++E + +EE +E + + K VK+E
Sbjct: 16 EEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVKEE 63
Score = 25.0 bits (53), Expect = 8.6
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 22 ETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAE 66
E + E +E KE+ ++ +E + ++ I+++ +K ++ +AE
Sbjct: 23 EARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVKEEPEAE 67
>pdb|1JFG|A Chain A, Trichodiene Synthase From Fusarium Sporotrichioides
Complexed With Diphosphate
pdb|1JFG|B Chain B, Trichodiene Synthase From Fusarium Sporotrichioides
Complexed With Diphosphate
pdb|1JFA|A Chain A, Trichodiene Synthase From Fusarium Sporotrichioides
pdb|1JFA|B Chain B, Trichodiene Synthase From Fusarium Sporotrichioides
Length = 374
Score = 32.3 bits (72), Expect = 0.054
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 47 EEIKEESS--SQKMTVKKEDAEKYGKISPNEWPPPPPTEEHKVVHQLDDVTRDSEVKATQ 104
E++KEE + +QK E A G +SP+EW PP V QL +V R +VK Q
Sbjct: 312 EKVKEEKTEDAQKFCKFYEQAANVGAVSPSEWAYPP-------VAQLANV-RSKDVKEVQ 363
>pdb|1KIY|A Chain A, D100e Trichodiene Synthase
pdb|1KIY|B Chain B, D100e Trichodiene Synthase
pdb|1KIZ|A Chain A, D100e Trichodiene Synthase Complexed With Pyrophosphate
pdb|1KIZ|B Chain B, D100e Trichodiene Synthase Complexed With Pyrophosphate
Length = 374
Score = 32.3 bits (72), Expect = 0.054
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 47 EEIKEESS--SQKMTVKKEDAEKYGKISPNEWPPPPPTEEHKVVHQLDDVTRDSEVKATQ 104
E++KEE + +QK E A G +SP+EW PP V QL +V R +VK Q
Sbjct: 312 EKVKEEKTEDAQKFCKFYEQAANVGAVSPSEWAYPP-------VAQLANV-RSKDVKEVQ 363
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 32.0 bits (71), Expect = 0.071
Identities = 48/252 (19%), Positives = 107/252 (42%), Gaps = 30/252 (11%)
Query: 15 LENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKISP- 73
L +EA +EE + + + K++ +++ + EE EE + + ++ E GKI
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
Query: 74 ------NEWPPPPPTEEHKVVHQ-LDDVT---RDSEVKATQI----------FDQLDLIG 113
E T+E K++ + + D+T + E KA + +L++
Sbjct: 989 EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Query: 114 ASAEKIAKMVKKIQEPLQ-KHQEIFDNLHGHFPHVESFKTAL-NEQQEILNALKSIEEEA 171
EK + ++KI+ L+ + ++ + + + K L +++E+ AL +E+E
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Query: 172 ANCSDSSMQAMDIMQF-----QDIHRQKIER--VVNVMRALSQYMNSLFEGKIDDSKRVS 224
+ +++ + ++ +D+ +K R R LS+ + +L D +
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168
Query: 225 SATFITGDDDKD 236
+ + G D KD
Sbjct: 1169 TQQELRGSDYKD 1180
Score = 30.0 bits (66), Expect = 0.27
Identities = 33/192 (17%), Positives = 79/192 (40%), Gaps = 20/192 (10%)
Query: 27 TKEEAKEEAKEEAKEEAKEKEEIKE---ESSSQKMTVKKEDAEKYGKISPNEWPPPPPTE 83
T++E + +AK+E + KE+++ E + QK T E+ + E E
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 84 EHKV-----VHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEIFD 138
E +V +L+++ + E + + ++ + A +K+ + + ++E L++ +
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972
Query: 139 NLH-------GHFPHVESFKTALNEQQEILNALKSIEEE-----AANCSDSSMQAMDIMQ 186
L G +E + +Q L + + EE N ++ +A ++ +
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 187 FQDIHRQKIERV 198
++ H I +
Sbjct: 1033 LKNKHESMISEL 1044
Score = 29.3 bits (64), Expect = 0.46
Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 16/220 (7%)
Query: 31 AKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKISPNEWPPPPPTEEHKVVHQ 90
AK++ EE E + + E +EE S Q KK+ ++ + E K+ Q
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ--MLDLEEQLEEEEAARQKL--Q 975
Query: 91 LDDVTRDSEVKATQ-----IFDQLDLIGASAEKIAKMVKKIQEPLQKHQEIFDNL----H 141
L+ VT D ++K + + DQ + + + + + V + L + +E NL +
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Query: 142 GHFPHVESFKTALNEQQEILNALKSIEEE-AANCSDSSMQAMDIM-QFQDIHRQKIERVV 199
H + + L ++++ L+ I+ + SD Q ++ Q ++ Q ++
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 200 NVMRALSQYMNSLFEGKIDDSKRVSSATFITGDDDKDLAS 239
+ AL++ + + K + K++ D +DL S
Sbjct: 1096 ELQAALARLEDETSQ-KNNALKKIRELESHISDLQEDLES 1134
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 31.2 bits (69), Expect = 0.12
Identities = 13/41 (31%), Positives = 26/41 (62%)
Query: 18 LEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKM 58
L+ L+ EE +E +E+ +EEA+ ++ E E +EE +++
Sbjct: 336 LDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKEL 376
Score = 30.4 bits (67), Expect = 0.21
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 6/48 (12%)
Query: 13 GDLENLEALETKEETKEEAKEEAKE------EAKEEAKEKEEIKEESS 54
G+L+ L+ +E + +EE +EE E E EE KE +E+ +E S
Sbjct: 334 GELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELS 381
Score = 26.6 bits (57), Expect = 3.0
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 14 DLENLEALETKEETKEEAKEEAK----EEAKEEAKEKEEIKEESSS 55
+L+++E L +EE EE + E++ E ++EE ++KE E S +
Sbjct: 338 ELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELSKA 383
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 386
Score = 31.2 bits (69), Expect = 0.12
Identities = 13/41 (31%), Positives = 26/41 (62%)
Query: 18 LEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKM 58
L+ L+ EE +E +E+ +EEA+ ++ E E +EE +++
Sbjct: 337 LDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKEL 377
Score = 30.4 bits (67), Expect = 0.21
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 6/48 (12%)
Query: 13 GDLENLEALETKEETKEEAKEEAKE------EAKEEAKEKEEIKEESS 54
G+L+ L+ +E + +EE +EE E E EE KE +E+ +E S
Sbjct: 335 GELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELS 382
Score = 26.6 bits (57), Expect = 3.0
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 14 DLENLEALETKEETKEEAKEEAK----EEAKEEAKEKEEIKEESSS 55
+L+++E L +EE EE + E++ E ++EE ++KE E S +
Sbjct: 339 ELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELSKA 384
>pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase
From Thermus Thermophilus Complexed With Cognate
Trnaphe
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of
Phenylalanyl-Trna Synthetase Complexed With
Phenylalanyl-Adenylate In The Presence Of Manganese
pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl- Adenylate
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalanine
Length = 350
Score = 30.0 bits (66), Expect = 0.27
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 28/96 (29%)
Query: 1 MTQEELDALMNGGDLENLEALETK--------------------EETKEEAKE------- 33
M +E L A+ N DLE L+AL+ + EE ++ +E
Sbjct: 1 MLEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAA 60
Query: 34 -EAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKY 68
EA EA+E+A E+ +KE +++ V A +
Sbjct: 61 LEAALEAREKALEEAALKEALERERVDVSLPGASLF 96
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 29.6 bits (65), Expect = 0.35
Identities = 13/19 (68%), Positives = 16/19 (83%)
Query: 16 ENLEALETKEETKEEAKEE 34
E LEAL KEETKE+A+E+
Sbjct: 182 EKLEALSVKEETKEDAEEK 200
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 29.6 bits (65), Expect = 0.35
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 28 KEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKISPNEWPPPPPTEEHK 86
KE++ +A + E+++K+E K+ S+ + +K K K +++ P P TE K
Sbjct: 416 KEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPKTENIK 474
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 29.3 bits (64), Expect = 0.46
Identities = 26/114 (22%), Positives = 52/114 (44%), Gaps = 17/114 (14%)
Query: 18 LEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKISPNEWP 77
+E+ K+E K E +E +EAK A++ + K E ++K+ + + D E+
Sbjct: 130 IESRAQKDEEKMEIQEIQLKEAKHIAEDADR-KYEEVARKLVIIESDLER---------- 178
Query: 78 PPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQ 131
EE + + + E+K + + L + A AEK ++ K +E ++
Sbjct: 179 ----AEERAELSEGKCAELEEEIKT--VTNNLKSLEAQAEKYSQKEDKYEEEIK 226
Score = 26.9 bits (58), Expect = 2.3
Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Query: 3 QEELDALMNGGDLENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKE--ESSSQKMTV 60
+EE+ + N +L++LEA K KE+ EE + ++ KE E E E S K+
Sbjct: 194 EEEIKTVTN--NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251
Query: 61 KKEDAE 66
+D E
Sbjct: 252 SIDDLE 257
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 29.3 bits (64), Expect = 0.46
Identities = 26/114 (22%), Positives = 52/114 (44%), Gaps = 17/114 (14%)
Query: 18 LEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKISPNEWP 77
+E+ K+E K E +E +EAK A++ + K E ++K+ + + D E+
Sbjct: 130 IESRAQKDEEKMEIQEIQLKEAKHIAEDADR-KYEEVARKLVIIESDLER---------- 178
Query: 78 PPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQ 131
EE + + + E+K + + L + A AEK ++ K +E ++
Sbjct: 179 ----AEERAELSEGKCAELEEEIKT--VTNNLKSLEAQAEKYSQKEDKYEEEIK 226
Score = 26.9 bits (58), Expect = 2.3
Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Query: 3 QEELDALMNGGDLENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKE--ESSSQKMTV 60
+EE+ + N +L++LEA K KE+ EE + ++ KE E E E S K+
Sbjct: 194 EEEIKTVTN--NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251
Query: 61 KKEDAE 66
+D E
Sbjct: 252 SIDDLE 257
>pdb|1DIP|A Chain A, The Solution Structure Of Porcine Delta-Sleep-Inducing
Peptide Immunoreactive Peptide, Nmr, 10 Structures
pdb|1DIP|B Chain B, The Solution Structure Of Porcine Delta-Sleep-Inducing
Peptide Immunoreactive Peptide, Nmr, 10 Structures
Length = 78
Score = 28.9 bits (63), Expect = 0.60
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 30 EAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKY-GKISPNEWPPPPPTEE 84
E E KE+ +E ++ +++ E++ K E EK+ ++SP E P P T E
Sbjct: 15 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEE--PAPETPE 68
>pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase
Length = 367
Score = 28.5 bits (62), Expect = 0.78
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 114 ASAEKIAKMVKKIQEPLQKHQEIFDNLHGHFP-----HVESFKTALNEQQEIL 161
AS E+I ++VK++ + H+ I + HG +P HV +F A+++ +L
Sbjct: 312 ASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLL 364
>pdb|1BPX|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Native Structure
pdb|9ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna (Non Gapped Dna Only)
pdb|9ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.1 Millimolar) And Zncl2 (0.2 Millimolar)
pdb|8ICK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5
Millimolar)
pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|1ZQA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar) At Ph 7.5
pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar)
pdb|9ICK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Atp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|7ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar) And Mgcl2 (1 Millimolar)
pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Nacl (75 Millimolar)
pdb|7ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(0.1 Millimolar)
pdb|7ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(0.1 Millimolar)
pdb|7ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Nicl2
(0.1 Millimolar)
pdb|7ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.001 Millimolar)
pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar) And In The Absence Of Nacl
pdb|8ICC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (No 5'-Phosphate)
pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Ddctp
(10 Millimolar) And Mncl2 (10 Millimolar)
pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|7ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.1 Millimolar) (Four-Day Soak)
pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(10 Millimolar) And Mgcl2 (50 Millimolar)
pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mncl2 (5 Millimolar), And Ammonium
Sulfate (75 Millimolar)
pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl
(150 Millimolar)
pdb|7ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cocl2
(0.1 Millimolar)
pdb|7ICK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mgcl2
(0.1 Millimolar)
pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
pdb|9ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mgcl2 (5 Millimolar)
pdb|9ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|8ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dctp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dgtp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cacl2 (5 Millimolar)
pdb|9ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Ddctp
(20 Millimolar) And Mgcl2 (20 Millimolar)
pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar)
pdb|7ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(1 Millimolar)
pdb|9ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Datp(Alpha)s (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (Non Gapped Dna Only)
pdb|1ZQN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|7ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.01 Millimolar)
pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(1.0 Millimolar)
pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar)
pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Nicl2 (5 Millimolar)
pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Crcl3 (5 Millimolar)
pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar) (Four-Day Soak)
pdb|9ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|8ICZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium
Sulfate (75 Millimolar)
pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna
pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 6.5
pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 7.5
pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar)
pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cdcl2 (1 Millimolar)
pdb|9ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cocl2 (5 Millimolar)
pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(150 Millimolar)
pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar)
pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar)
pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Mgcl2 (75 Millimolar)
pdb|1ZQO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|1ZQQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|7ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.1 Millimolar)
pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar)
pdb|1ZQL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl
(0.5 Millimolar)
pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cucl2 (0.1 Millimolar)
pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.01 Millimolar) And Zncl2 (0.02 Millimolar)
pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2
(0.1 Millimolar)
pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(150 Millimolar)
pdb|1ZQR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Nicl2
(15 Millimolar)
pdb|1ZQE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(Saturated Solution)
pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And
Ddctp
Length = 335
Score = 28.5 bits (62), Expect = 0.78
Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 23/173 (13%)
Query: 10 MNGGDLENLEALETKEETKEEAKEEA---KEEAKEEAKEKEEIKEESSSQKMT-VKKEDA 65
+NGG + L L E+ +A + ++ A AK +IK + ++K+ V + A
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 66 EKYGKISPNEWPPPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAE-------- 117
EK + + +L+ + +D + ++ IG SA
Sbjct: 71 EKIDEFLATG-----------KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGI 119
Query: 118 KIAKMVKKIQEPLQKHQEIFDNLHGHFPHVESFKTALNEQQEILNALKSIEEE 170
K + ++K ++ L HQ I G F + L Q +LN +K ++ E
Sbjct: 120 KTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSE 172
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 28.5 bits (62), Expect = 0.78
Identities = 41/182 (22%), Positives = 82/182 (44%), Gaps = 21/182 (11%)
Query: 82 TEEHKVVHQLDD-----VTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEI 136
T+E + DD VT D + + F+Q++ I +KIA+ V++++ +KH I
Sbjct: 5 TQELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVK---RKHSAI 61
Query: 137 FDNLHGHFPHVESFKTALNEQQEILN----ALKSIE-----EEAANCSDSSMQAMDIMQF 187
+ + E + +++ ++ N LKSIE EE N S + ++ Q
Sbjct: 62 LASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK-TQH 120
Query: 188 QDIHRQKIERVVNVMRALSQYMNSLFEGKIDDSKRVSSATFITGDDDKDLASADDIEALI 247
+ R+ +E V++ A +G+I ++ T T ++ +D+ + + A+
Sbjct: 121 STLSRKFVE-VMSEYNATQSDYRERCKGRIQRQLEITGRT-TTSEELEDMLESGN-PAIF 177
Query: 248 AS 249
AS
Sbjct: 178 AS 179
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 28.5 bits (62), Expect = 0.78
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 114 ASAEKIAKMVKKIQEPLQKHQEIFDNLHGHFP-----HVESFKTALNEQQEIL 161
AS E+I ++VK++ + H+ I + HG +P HV +F A+++ +L
Sbjct: 333 ASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLL 385
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 28.5 bits (62), Expect = 0.78
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 114 ASAEKIAKMVKKIQEPLQKHQEIFDNLHGHFP-----HVESFKTALNEQQEIL 161
AS E+I ++VK++ + H+ I + HG +P HV +F A+++ +L
Sbjct: 333 ASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLL 385
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 28.5 bits (62), Expect = 0.78
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 114 ASAEKIAKMVKKIQEPLQKHQEIFDNLHGHFP-----HVESFKTALNEQQEIL 161
AS E+I ++VK++ + H+ I + HG +P HV +F A+++ +L
Sbjct: 333 ASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLL 385
>pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|Z Chain Z, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|Z Chain Z, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|Z Chain Z, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|Z Chain Z, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|X Chain X, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
Length = 240
Score = 28.1 bits (61), Expect = 1.0
Identities = 16/45 (35%), Positives = 23/45 (50%)
Query: 21 LETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDA 65
LE + ET+ E +EE EEA +E E E + + + EDA
Sbjct: 70 LEVESETEAEVEEEGGEEAPDEDVETELQARGLTEKTPDLSDEDA 114
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 28.1 bits (61), Expect = 1.0
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 14 DLENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQK 57
+L+NL+ + E+ KE+ KE+AKE KEKE+ + ++++K
Sbjct: 53 NLQNLKITDKVEDFKED-----KEKAKEWGKEKEKEWKLTATEK 91
Score = 28.1 bits (61), Expect = 1.0
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 117 EKIAKMVKKIQEPLQKHQEIFDNLHGHFPHVESFKTALNEQQEILNALKSIEEEAANCSD 176
+K++K+VKK E LQ + G FK +N + +K+ EE A + +D
Sbjct: 243 DKVSKVVKKGVECLQ--------IEGTLKKSLDFKNDINAEAHSWG-MKNYEEWAKDLTD 293
Query: 177 SSMQAMDIMQFQDIHRQKIERVVNVMRALSQYMNSLFEGKIDDSKRVSSA 226
S +A+D RQ + + N +R N + +I K +S A
Sbjct: 294 SQREALD-----GYARQDYKEINNYLRNQGGSGNEKLDAQI---KNISDA 335
>pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id: 1; Molecule:
Adenovirus Type 2 Hexon; Chain: Null; Synonym:
Adenovirus Type 2 Polypeptide Ii
Length = 967
Score = 28.1 bits (61), Expect = 1.0
Identities = 11/37 (29%), Positives = 25/37 (66%)
Query: 25 EETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVK 61
E+T++ + A++E +E+ E+EE +E+++ + T K
Sbjct: 135 EQTEDSGRAVAEDEEEEDEDEEEEEEEQNARDQATKK 171
Score = 26.9 bits (58), Expect = 2.3
Identities = 11/43 (25%), Positives = 26/43 (59%)
Query: 20 ALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKK 62
A + +EE ++E +EE ++ A+++A +K + ++ T+ K
Sbjct: 145 AEDEEEEDEDEEEEEEEQNARDQATKKTHVYAQAPLSGETITK 187
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 28.1 bits (61), Expect = 1.0
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 117 EKIAKMVKKIQEPLQKHQEIFDNLHGHFPHVESFKTALNEQQEILNALKSIEEEAANCSD 176
+K++K+VKK E LQ + G FK +N + +K+ EE A + +D
Sbjct: 182 DKVSKVVKKGVECLQ--------IEGTLKKSLDFKNDINAEAHSWG-MKNYEEWAKDLTD 232
Query: 177 SSMQAMDIMQFQDIHRQKIERVVNVMRALSQYMNSLFEGKIDDSKRVSSA 226
S +A+D RQ + + N +R N + +I K +S A
Sbjct: 233 SQREALD-----GYARQDYKEINNYLRNQGGSGNEKLDAQI---KNISDA 274
>pdb|1LNR|T Chain T, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 237
Score = 27.7 bits (60), Expect = 1.3
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 1 MTQEELDALMNGGDLENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTV 60
+T EEL+A + + L A E EEA E E EE+K E+S
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAG-------ELSEEAAEAVLEGDASLEEVKAEASEDNAGT 228
Query: 61 KKED 64
ED
Sbjct: 229 DSED 232
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 26.9 bits (58), Expect = 2.3
Identities = 33/153 (21%), Positives = 66/153 (42%), Gaps = 14/153 (9%)
Query: 21 LETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKISPNEWPPPP 80
LE K+ E E K K + EE+KE K + ++ +KY + N
Sbjct: 95 LENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNN----- 149
Query: 81 PTEEHKVVHQLDDVT-RDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEIFDN 139
E ++ + ++V + E K T + ++ + + E +AK V+ + +PL ++F
Sbjct: 150 QVYEFRISDENNEVQYKTKEGKITVLGEKFN--WRNIEVMAKNVEGVLKPLTADYDLF-- 205
Query: 140 LHGHFPHVESFKTAL--NEQQEILNALKSIEEE 170
P + K + E +++N S+E++
Sbjct: 206 --ALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQ 236
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 26.9 bits (58), Expect = 2.3
Identities = 12/49 (24%), Positives = 26/49 (52%)
Query: 16 ENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKED 64
+ +E + K + +EE ++ E A E ++K+ E +K+ +KE+
Sbjct: 298 DTIEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
>pdb|1MTY|D Chain D, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|E Chain E, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MMO|D Chain D, Methane Monooxygenase Hydrolase (E.C.1.14.13.25) (Methane
Hydroxylase)
pdb|1MMO|E Chain E, Methane Monooxygenase Hydrolase (E.C.1.14.13.25) (Methane
Hydroxylase)
Length = 512
Score = 26.6 bits (57), Expect = 3.0
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 23 TKEETKEEAKEEAKEEAKEEAKE---KEEIKEESSSQKMTVKKEDAEKYGKISPNEWPPP 79
TK TK + E KE+ K AKE E +K+E + V ++ P +W
Sbjct: 30 TKYATKYKMANETKEQFKLIAKEYARMEAVKDERQFGSLQVALTRLNAGVRVHP-KW--- 85
Query: 80 PPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEIFDN 139
E KVV +V + + AT + D A+ +K + + + E HQ + N
Sbjct: 86 --NETMKVVSNFLEVGEYNAIAATGML--WDSAQAAEQKNGYLAQVLDEIRHTHQCAYVN 141
Query: 140 LH 141
+
Sbjct: 142 YY 143
>pdb|1JQK|A Chain A, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|B Chain B, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|C Chain C, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|D Chain D, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|E Chain E, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|F Chain F, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
Length = 639
Score = 26.6 bits (57), Expect = 3.0
Identities = 39/188 (20%), Positives = 70/188 (36%), Gaps = 34/188 (18%)
Query: 81 PTEEHKVVHQLDDVTR---------DSEVKATQIFDQLDLIGASAEKIAKMVKKI--QEP 129
P +EHK V + R D A F Q ++G SAE + + K+ +P
Sbjct: 370 PFDEHKAVETAKTIIRMAIAAFGRRDPNRVAIPAFKQKSIVGFSAEAVVAALAKVNADDP 429
Query: 130 LQK--HQEIFDNLHGHFPHVESFKTALNEQQEILNALKSIEEE-----AANCSDSSMQAM 182
L+ + N+ G V T + + ++ KS+ + A C+ +
Sbjct: 430 LKPLVDNVVNGNIQGIVLFVGCNTTKVQQDSAYVDLAKSLAKRNVLVLATGCAAGAFAKA 489
Query: 183 DIMQFQDIHRQKIERVVNVMRA------------LSQYMNSLFEGKIDDSKRVSSATFIT 230
+M + + E + V+ A L +M S +D+S+ V+ AT +
Sbjct: 490 GLMTSEATTQYAGEGLKGVLSAIGTAAGLGGPLPLVMHMGSC----VDNSRAVALATALA 545
Query: 231 GDDDKDLA 238
DL+
Sbjct: 546 NKLGVDLS 553
>pdb|1IT2|A Chain A, Hagfish Deoxy Hemoglobin
pdb|1IT2|B Chain B, Hagfish Deoxy Hemoglobin
pdb|1IT3|A Chain A, Hagfish Co Ligand Hemoglobin
pdb|1IT3|B Chain B, Hagfish Co Ligand Hemoglobin
pdb|1IT3|C Chain C, Hagfish Co Ligand Hemoglobin
pdb|1IT3|D Chain D, Hagfish Co Ligand Hemoglobin
Length = 146
Score = 26.6 bits (57), Expect = 3.0
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 93 DVTRDSEVK--ATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEIF 137
++ +D EVK A IF++++ I S + +++K +++ QKH+ +F
Sbjct: 61 NLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKTVF 107
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 26.2 bits (56), Expect = 3.9
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 14 DLENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKE 51
D E E + + E + EA+EEA EE EA EK EI+E
Sbjct: 80 DGEPPEFKKKELEKRREAREEA-EEKWREALEKGEIEE 116
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.2 bits (56), Expect = 3.9
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 31/203 (15%)
Query: 16 ENLEALETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKISPNE 75
+++E++++ +E K+ K +E E E I ++ +K+E ++PNE
Sbjct: 796 DSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNE 855
Query: 76 WPPPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKI-AKMVKKIQEPLQKHQ 134
D T + KA Q A A +I K KKI LQK+
Sbjct: 856 ----------------IDSTWSALEKAEQEH-------AEALRIELKRQKKIAVLLQKYN 892
Query: 135 EIFDNLHGHFPHVESFKTALNEQQEILNA----LKSIEEEAANCSDSSMQAMDIMQFQDI 190
I L ++ +S NE + + A LK++E C S++ I
Sbjct: 893 RILKKLE-NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC--QSLEGQSNSDLLSI 949
Query: 191 HRQKIERVVNVMRALSQYMNSLF 213
Q E N + L++ ++ F
Sbjct: 950 LAQLTELNYNGVPELTERKDTFF 972
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf):
Wild- Type Lf Complexed With The N-Terminal Sequence Of
Mapkk2
Length = 776
Score = 26.2 bits (56), Expect = 3.9
Identities = 17/59 (28%), Positives = 32/59 (53%), Gaps = 4/59 (6%)
Query: 21 LETKEETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKM----TVKKEDAEKYGKISPNE 75
++ KE+ K+E K + +E K + + +EI + ++ VKKE AEK + P++
Sbjct: 11 VKEKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSD 69
>pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Complexed To 9 Base Pairs Of Duplex Dna
pdb|3BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Complexed To Duplex Dna After The Incorporation Of +ttp
By The Enzyme
pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Complexed To 11 Base Pairs Of Duplex Dna After Addition
Of Two Datp Residues
Length = 580
Score = 25.8 bits (55), Expect = 5.1
Identities = 38/224 (16%), Positives = 83/224 (36%), Gaps = 46/224 (20%)
Query: 41 EEAKEKEEIKEESSSQKMTVKKEDAEKYGKISPNEWPPPPPTEEHKVVHQ---------- 90
+ A+ ++++ + ++ + D YGK + P P EH V
Sbjct: 106 DPAQGVDDVRAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPF 165
Query: 91 LDDVTRDS--------EVKATQIFDQLDLIGASAE--KIAKMVKKIQEPLQKHQEIFDNL 140
LD++ R+ E + I +++ G + ++ +M K++ E L ++ L
Sbjct: 166 LDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYEL 225
Query: 141 HG-------------------HFPHVESFKTALNEQQEILNALKSIEEEAANCSDSSMQA 181
G P ++ KT + ++L L E N
Sbjct: 226 AGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVEN-------I 278
Query: 182 MDIMQFQDIHRQKIERVVNVMRALSQYMNSLFEGKIDDSKRVSS 225
+ Q + IE ++ V+R ++ ++++F + + R+SS
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSS 322
>pdb|1KIL|E Chain E, Three-Dimensional Structure Of The ComplexinSNARE
COMPLEX
Length = 49
Score = 25.8 bits (55), Expect = 5.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 28 KEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYG 69
KEE ++EA +A+EE K K E +++ +++ +KYG
Sbjct: 10 KEEERQEALRQAEEERKAKYAKME---AEREVMRQGIRDKYG 48
>pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|B Chain B, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|C Chain C, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|D Chain D, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
Length = 84
Score = 25.4 bits (54), Expect = 6.6
Identities = 16/58 (27%), Positives = 25/58 (42%), Gaps = 7/58 (12%)
Query: 12 GGDLENLEALETKEETKEEAKEEA-------KEEAKEEAKEKEEIKEESSSQKMTVKK 62
GG E E + + AKE+ + E AKE E +++E K ++KK
Sbjct: 19 GGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKK 76
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 25.4 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 26 ETKEEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKK 62
E +EAK E K E K E ++ + SS +KK
Sbjct: 5 EVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKK 41
>pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-Catenin And
Alpha- Catenin
Length = 205
Score = 25.0 bits (53), Expect = 8.6
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
Query: 29 EEAKEEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEKYGKI 71
E+A E E+ + AKE + +KEE + V ED K G +
Sbjct: 10 EQATENFLEKGDKIAKESQFLKEE-----LVVAVEDVRKQGDL 47
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 25.0 bits (53), Expect = 8.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 18 LEALETKEETKEEAKEEAKEEAKEEAKEKEE 48
L+ E ++ K+ +EEAK E +++ KE++E
Sbjct: 228 LKQKEVEQLIKKHEEEEAKAEREKKEKEQKE 258
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 25.0 bits (53), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 33 EEAKEEAKEEAKEKEEIKEESSSQKMTVKKEDAEK 67
EEAKE+ + K + + + SS +K V +E E+
Sbjct: 641 EEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIER 675
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.306 0.125 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,299,185
Number of Sequences: 13198
Number of extensions: 48535
Number of successful extensions: 297
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 78
length of query: 253
length of database: 2,899,336
effective HSP length: 86
effective length of query: 167
effective length of database: 1,764,308
effective search space: 294639436
effective search space used: 294639436
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)