BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15644801|ref|NP_206971.1| molybdopterin biosynthesis protein (moeA) [Helicobacter pylori 26695] (391 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1G8L|A  Chain A, Crystal Structure Of Escherichia Coli M...   188  8e-49
pdb|1FC5|A  Chain A, Crystal Structure Of Molybdopterin Bios...   182  7e-47
pdb|1AGJ|A  Chain A, Epidermolytic Toxin A From Staphylococc...    26  6.8

>pdb|1G8L|A Chain A, Crystal Structure Of Escherichia Coli Moea
 pdb|1G8L|B Chain B, Crystal Structure Of Escherichia Coli Moea
 pdb|1G8R|A Chain A, Moea
 pdb|1G8R|B Chain B, Moea
          Length = 411

 Score =  188 bits (478), Expect = 8e-49
 Identities = 117/317 (36%), Positives = 178/317 (55%), Gaps = 10/317 (3%)

Query: 22  EVISLFESIGRILAEDIICIHALPKFNQSAMDGYGFKMQDL--GKKTQVVQRIFAGDDVS 79
           E + L +  GRILA D++    +P F+ SAMDGY  ++ D+  G+   V  + FAG    
Sbjct: 28  ETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYH 87

Query: 80  ALEVKENECVKIMTGAMVPKGIETIVPIECMLESHTNFALAPKDFKINANIRQKGENASL 139
             E     C++IMTGA VP+G E +V  E   E   N      + +   NIR++GE+ S 
Sbjct: 88  G-EWPAGTCIRIMTGAPVPEGCEAVVMQE-QTEQMDNGVRFTAEVRSGQNIRRRGEDISA 145

Query: 140 NSVLVPKNTRLNYGHIALIASQGLKEIKAFRKLKIALFSSGDELVPLGQNALECQVYDVN 199
            +V+ P  TRL    + +IAS G+ E+   RK+++ALFS+GDEL   GQ   + Q+YD N
Sbjct: 146 GAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTN 205

Query: 200 SVGIFNMLKNYNTHF--LGVLKDDKN-LQLKILESQDY-DVILSSAGVSVGDKDFFKDAL 255
            + +  ML+        LG+++DD + L+   +E+    DV++SS GVSVG+ D+ K  L
Sbjct: 206 RLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTIL 265

Query: 256 KEKNALFYYEKVNLKPGKPVTLARLNQSMIIGLPGNPLSCLLVLRVLILPLLERLSLNKD 315
           +E   + ++ K+ +KPGKP    +L+ S   GLPGNP+S  L    L+ PLL +LS N  
Sbjct: 266 EELGEIAFW-KLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTA 324

Query: 316 FKLKPFKAQINAPLKLK 332
             L P + ++    +LK
Sbjct: 325 SGL-PARQRVRTASRLK 340

>pdb|1FC5|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
           Protein
 pdb|1FC5|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
           Protein
          Length = 411

 Score =  182 bits (461), Expect = 7e-47
 Identities = 114/317 (35%), Positives = 175/317 (54%), Gaps = 10/317 (3%)

Query: 22  EVISLFESIGRILAEDIICIHALPKFNQSAMDGYGFKMQDL--GKKTQVVQRIFAGDDVS 79
           E + L +  GRILA D++    +P F+ SA DGY  ++ D+  G+   V  + FAG    
Sbjct: 28  ETLPLVQCFGRILASDVVSPLDVPGFDNSAXDGYAVRLADIASGQPLPVAGKSFAGQPYH 87

Query: 80  ALEVKENECVKIMTGAMVPKGIETIVPIECMLESHTNFALAPKDFKINANIRQKGENASL 139
             E     C++I TGA VP+G E +V  E   E   N      + +   NIR++GE+ S 
Sbjct: 88  G-EWPAGTCIRIXTGAPVPEGCEAVVXQE-QTEQXDNGVRFTAEVRSGQNIRRRGEDISA 145

Query: 140 NSVLVPKNTRLNYGHIALIASQGLKEIKAFRKLKIALFSSGDELVPLGQNALECQVYDVN 199
            +V+ P  TRL    + +IAS G+ E+   RK+++ALFS+GDEL   GQ   + Q+YD N
Sbjct: 146 GAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTN 205

Query: 200 SVGIFNMLKNYNTHF--LGVLKDDKN-LQLKILESQDY-DVILSSAGVSVGDKDFFKDAL 255
            + +   L+        LG+++DD + L+   +E+    DV++SS GVSVG+ D+ K  L
Sbjct: 206 RLAVHLXLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTIL 265

Query: 256 KEKNALFYYEKVNLKPGKPVTLARLNQSMIIGLPGNPLSCLLVLRVLILPLLERLSLNKD 315
           +E   + ++ K+ +KPGKP    +L+ S   GLPGNP+S  L    L+ PLL +LS N  
Sbjct: 266 EELGEIAFW-KLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTA 324

Query: 316 FKLKPFKAQINAPLKLK 332
             L P + ++    +LK
Sbjct: 325 SGL-PARQRVRTASRLK 340

>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
 pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
 pdb|1EXF|A Chain A, Exfoliative Toxin A
          Length = 242

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 129 NIRQKGENASLNSVLVPKNTRLNYGHIALIASQGLKEIKAFRKLKIALFSSGDELVPLGQ 188
           N+  KG+  S   VL+ KNT L   HIA  A+    ++ +FR   I    +G+   P G+
Sbjct: 48  NVFVKGQT-SATGVLIGKNTVLTNRHIAKFANGDPSKV-SFRP-SINTDDNGNTETPYGE 104

Query: 189 NALECQVYDVNSVGIFNMLKNYNTHFLGVLKDDKNLQLKILESQD 233
             ++  + +    G+   L        GV   DK    KI  S D
Sbjct: 105 YEVKEILQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSND 149

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.139    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,160,600
Number of Sequences: 13198
Number of extensions: 87683
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 3
length of query: 391
length of database: 2,899,336
effective HSP length: 90
effective length of query: 301
effective length of database: 1,711,516
effective search space: 515166316
effective search space used: 515166316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)