BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644802|ref|NP_206972.1| flagellar biosynthetic
protein (fliR) [Helicobacter pylori 26695]
         (255 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1B5S|A  Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1...    26  5.1

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
          Length = 242

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 120 SQKPIVGQALLLLAILILLDLSFHHQII 147
           ++KPIV    ++ A ++ L LSF H++I
Sbjct: 191 AEKPIVRDGEIVAAPMLALSLSFDHRMI 218



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.334    0.148    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,219,966
Number of Sequences: 13198
Number of extensions: 44167
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 1
length of query: 255
length of database: 2,899,336
effective HSP length: 86
effective length of query: 169
effective length of database: 1,764,308
effective search space: 298168052
effective search space used: 298168052
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (25.0 bits)