BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644805|ref|NP_206975.1| fructose-bisphosphate
aldolase (tsr) [Helicobacter pylori 26695]
         (307 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1GVF|A  Chain A, Structure Of Tagatose-1,6-Bisphosphate ...   205  5e-54
pdb|1DOS|A  Chain A, Structure Of Fructose-Bisphosphate Aldo...    71  2e-13
pdb|1B57|A  Chain A, Class Ii Fructose-1,6-Bisphosphate Aldo...    70  3e-13
pdb|1LTD|A  Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Comple...    35  0.011
pdb|1LCO|A  Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrog...    35  0.011
pdb|1KBI|A  Chain A, Crystallographic Study Of The Recombina...    35  0.011
pdb|1KBJ|A  Chain A, Crystallographic Study Of The Recombina...    35  0.011
pdb|1QCW|A  Chain A, Flavocytochrome B2, Arg289lys Mutant >g...    35  0.014
pdb|1DN1|A  Chain A, Crystal Structure Of The Neuronal-Sec1S...    30  0.45
pdb|1IXM|B  Chain B, Crystal Structure Of Spoob From Bacillu...    29  0.77
pdb|1G5Z|A  Chain A, Crystal Structure Of Lyme Disease Antig...    28  1.3
pdb|1G4B|E  Chain E, Crystal Structures Of The Hslvu Peptida...    27  2.2
pdb|1DO2|A  Chain A, Trigonal Crystal Form Of Heat Shock Loc...    27  2.2
pdb|1K4E|A  Chain A, Crystal Structure Of The Class D Beta-L...    27  2.2
pdb|1HT1|E  Chain E, Nucleotide-Dependent Conformational Cha...    27  2.2
pdb|1E4D|C  Chain C, Structure Of Oxa10 Beta-Lactamase At Ph...    27  2.9
pdb|1K4F|B  Chain B, Crystal Structure Of The Class D Beta-L...    27  2.9
pdb|1JQL|A  Chain A, Mechanism Of Processivity Clamp Opening...    27  2.9
pdb|1E3U|B  Chain B, Mad Structure Of Oxa10 Class D Beta-Lac...    27  2.9
pdb|1FOF|A  Chain A, Crystal Structure Of The Class D Beta-L...    27  2.9
pdb|2POL|A  Chain A, Pol Iii (Beta Subunit) (E.C.2.7.7.7) >g...    27  2.9
pdb|1K55|C  Chain C, Oxa 10 Class D Beta-Lactamase At Ph 7.5...    27  2.9
pdb|1E3U|D  Chain D, Mad Structure Of Oxa10 Class D Beta-Lac...    27  2.9
pdb|1JVN|A  Chain A, Crystal Structure Of Imidazole Glycerol...    27  3.8
pdb|1M4V|A  Chain A, Crystal Structure Of Set3, A Superantig...    27  3.8
pdb|1H5X|A  Chain A, Crystal Structure Of The Class D Beta-L...    26  5.0
pdb|1HZJ|A  Chain A, Human Udp-Galactose 4-Epimerase: Accomm...    26  5.0
pdb|1I3K|A  Chain A, Molecular Basis For Severe Epimerase-De...    26  5.0
pdb|3GAL|B  Chain B, Crystal Structure Of Human Galectin-7 I...    26  5.0
pdb|1EK6|A  Chain A, Structure Of Human Udp-Galactose 4-Epim...    26  5.0
>pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase
 pdb|1GVF|B Chain B, Structure Of Tagatose-1,6-Bisphosphate Aldolase
          Length = 286

 Score =  205 bits (522), Expect = 5e-54
 Identities = 115/306 (37%), Positives = 174/306 (56%), Gaps = 24/306 (7%)

Query: 2   LVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQTSEGAIKYMGIDMA 61
           ++    +L  A   GY V AFN  N E + AI E  +E  SP+ +  + G  K++ ++  
Sbjct: 3   IISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEI 62

Query: 62  VGMVKTMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVV 121
             +       Y ++P+ALHLDH  + +   + V AG  S MID SH  F EN++L   VV
Sbjct: 63  YALCSAYSTTY-NMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVV 121

Query: 122 KMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHG 181
              H+   SVEAELGRL G+ED++SVD + A L +P+EA++FV+ + VD LA AIGT+HG
Sbjct: 122 DFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHG 181

Query: 182 AFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFL 241
              +   PK+DF+RL E++ + ++PLVLHGAS +PD                     EF+
Sbjct: 182 L--YSKTPKIDFQRLAEIREVVDVPLVLHGASDVPD---------------------EFV 218

Query: 242 QESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLL 301
           + +++ G+ KVN  T+L+IAF   V+    E+    D R +      A+K VV+ ++ + 
Sbjct: 219 RRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVC 278

Query: 302 GSANKI 307
           GSAN+I
Sbjct: 279 GSANRI 284
>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
 pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
          Length = 358

 Score = 70.9 bits (172), Expect = 2e-13
 Identities = 72/293 (24%), Positives = 118/293 (39%), Gaps = 65/293 (22%)

Query: 12  AHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQTSEGAIKY---------------- 55
           A +  + + A N V  + +NA+ E   +  +P+ +Q S G   +                
Sbjct: 24  AKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAI 83

Query: 56  MGIDMAVGMVKTMCERYPHIPVALHLDHGTT---------FESCEKAVKAG----FTSVM 102
           +G       V  M E Y  +PV LH DH             ++ EK   A     F+S M
Sbjct: 84  LGAISGAHHVHQMAEHYG-VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHM 142

Query: 103 IDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKD--AVLVNPKEA 160
           ID S  + +EN+E+ SK ++     G+++E ELG   G ED +     D  A+   P++ 
Sbjct: 143 IDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDV 202

Query: 161 E----QFVKESQVDYLAPAIGTSHGAFKFKG---EPKLDFERLQEVKRLTNIP-----LV 208
           +    +  K S    +A + G  HG +K       P +  +  + V +  N+P      V
Sbjct: 203 DYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFV 262

Query: 209 LHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIA 261
            HG S                     G   + +++SV  G+ K+N DTD + A
Sbjct: 263 FHGGS---------------------GSTAQEIKDSVSYGVVKMNIDTDTQWA 294
>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
           With Phosphoglycolohydroxamate
 pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
           With Phosphoglycolohydroxamate
 pdb|1ZEN|   Class Ii Fructose-1,6-Bisphosphate Aldolase
          Length = 358

 Score = 70.1 bits (170), Expect = 3e-13
 Identities = 72/293 (24%), Positives = 118/293 (39%), Gaps = 65/293 (22%)

Query: 12  AHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQTSEGAIKY---------------- 55
           A +  + + A N V  + +NA+ E   +  +P+ +Q S G   +                
Sbjct: 24  AKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAI 83

Query: 56  MGIDMAVGMVKTMCERYPHIPVALHLDHGTT---------FESCEKAVKAG----FTSVM 102
           +G       V  M E Y  +PV LH DH             ++ EK   A     F+S M
Sbjct: 84  LGAISGAHHVHQMAEHYG-VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHM 142

Query: 103 IDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKD--AVLVNPKEA 160
           ID S  + +EN+E+ SK ++     G+++E ELG   G ED +     D  A+   P++ 
Sbjct: 143 IDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDV 202

Query: 161 E----QFVKESQVDYLAPAIGTSHGAFKFKG---EPKLDFERLQEVKRLTNIP-----LV 208
           +    +  K S    +A + G  HG +K       P +  +  + V +  N+P      V
Sbjct: 203 DYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLNFV 262

Query: 209 LHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIA 261
            HG S                     G   + +++SV  G+ K+N DTD + A
Sbjct: 263 FHGGS---------------------GSTAQEIKDSVSYGVVKMNIDTDTQWA 294
>pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
 pdb|1LTD|B Chain B, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
          Length = 506

 Score = 35.0 bits (79), Expect = 0.011
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 85  TTFESC--EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIE 142
           +T  SC  E+ ++A  +   I         + ++T  +VK     GV        L    
Sbjct: 223 STLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKA------LFVTV 276

Query: 143 DNISVD--EKDAVLV--NPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198
           D  S+   EKD  L   N K   + +K++ V+    + G S    KF  +P L ++ ++E
Sbjct: 277 DAPSLGQREKDMKLKFSNTKAGPKAMKKTNVE---ESQGASRALSKFI-DPSLTWKDIEE 332

Query: 199 VKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKG--------VPFEFLQESV 245
           +K+ T +P+V+ G     D ++ + +   G +  + G         P E L E++
Sbjct: 333 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETM 387
>pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
           Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
           B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
           Heterogen: Phenyl-Pyruvate
 pdb|1LDC|A Chain A, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
           (Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
           Replaced By Phe (Y143f) Complexed With Pyruvate
 pdb|1LCO|B Chain B, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
           Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
           B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
           Heterogen: Phenyl-Pyruvate
 pdb|1LDC|B Chain B, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
           (Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
           Replaced By Phe (Y143f) Complexed With Pyruvate
          Length = 511

 Score = 35.0 bits (79), Expect = 0.011
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 85  TTFESC--EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIE 142
           +T  SC  E+ ++A  +   I         + ++T  +VK     GV        L    
Sbjct: 228 STLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKA------LFVTV 281

Query: 143 DNISVD--EKDAVLV--NPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198
           D  S+   EKD  L   N K   + +K++ V+    + G S    KF  +P L ++ ++E
Sbjct: 282 DAPSLGQREKDMKLKFSNTKAGPKAMKKTNVE---ESQGASRALSKFI-DPSLTWKDIEE 337

Query: 199 VKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKG--------VPFEFLQESV 245
           +K+ T +P+V+ G     D ++ + +   G +  + G         P E L E++
Sbjct: 338 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETM 392
>pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
           Domain Of Baker's Yeast Flavocytochrome B2: Comparison
           With The Intact Wild-Type Enzyme
 pdb|1FCB|A Chain A, Flavocytochrome b2 (E.C.1.1.2.3)
 pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
           Domain Of Baker's Yeast Flavocytochrome B2: Comparison
           With The Intact Wild-Type Enzyme
 pdb|1FCB|B Chain B, Flavocytochrome b2 (E.C.1.1.2.3)
          Length = 511

 Score = 35.0 bits (79), Expect = 0.011
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 85  TTFESC--EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIE 142
           +T  SC  E+ ++A  +   I         + ++T  +VK     GV        L    
Sbjct: 228 STLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKA------LFVTV 281

Query: 143 DNISVD--EKDAVLV--NPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198
           D  S+   EKD  L   N K   + +K++ V+    + G S    KF  +P L ++ ++E
Sbjct: 282 DAPSLGQREKDMKLKFSNTKAGPKAMKKTNVE---ESQGASRALSKFI-DPSLTWKDIEE 337

Query: 199 VKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKG--------VPFEFLQESV 245
           +K+ T +P+V+ G     D ++ + +   G +  + G         P E L E++
Sbjct: 338 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETM 392
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
           Domain Of Baker's Yeast Flavocytochrome B2: Comparison
           With The Intact Wild-Type Enzyme
 pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
           Domain Of Baker's Yeast Flavocytochrome B2: Comparison
           With The Intact Wild-Type Enzyme
          Length = 412

 Score = 35.0 bits (79), Expect = 0.011
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 85  TTFESC--EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIE 142
           +T  SC  E+ ++A  +   I         + ++T  +VK     GV        L    
Sbjct: 129 STLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKA------LFVTV 182

Query: 143 DNISVD--EKDAVLV--NPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198
           D  S+   EKD  L   N K   + +K++ V+    + G S    KF  +P L ++ ++E
Sbjct: 183 DAPSLGQREKDMKLKFSNTKAGPKAMKKTNVE---ESQGASRALSKFI-DPSLTWKDIEE 238

Query: 199 VKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKG--------VPFEFLQESV 245
           +K+ T +P+V+ G     D ++ + +   G +  + G         P E L E++
Sbjct: 239 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETM 293
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
 pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
          Length = 410

 Score = 34.7 bits (78), Expect = 0.014
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 85  TTFESC--EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIE 142
           +T  SC  E+ ++A  +   I         + ++T  +VK     GV        L    
Sbjct: 127 STLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKA------LFVTV 180

Query: 143 DNISVDEKDAVLV----NPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198
           D  S+ +K+  +     N K   + +K++ V+    + G S    KF  +P L ++ ++E
Sbjct: 181 DAPSLGQKEKDMKLKFSNTKAGFKAMKKTNVE---ESQGASRALSKFI-DPSLTWKDIEE 236

Query: 199 VKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKG--------VPFEFLQESV 245
           +K+ T +P+V+ G     D ++ + +   G +  + G         P E L E++
Sbjct: 237 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETM 291
>pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
          Length = 594

 Score = 29.6 bits (65), Expect = 0.45
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 237 PFEFLQESVKGGINKV-NTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVK 295
           P     E VK    KV  T T++ IAF+    +V + D +    + F+SP +  +KN + 
Sbjct: 111 PDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSAD-SFQSFYSPHKAQMKNPIL 169

Query: 296 ERM 298
           ER+
Sbjct: 170 ERL 172
>pdb|1IXM|B Chain B, Crystal Structure Of Spoob From Bacillus Subtilis
 pdb|1IXM|A Chain A, Crystal Structure Of Spoob From Bacillus Subtilis
          Length = 192

 Score = 28.9 bits (63), Expect = 0.77
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 111 EENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVD 170
           EEN+  T+   ++ H  G S    + +L  I+ N+S+ + D V    +  E+ V +++ +
Sbjct: 9   EENISDTALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVF---EMIEEMVIDAKHE 65

Query: 171 YLAPAIGTSHGAFKF------KGEPKLDFERLQEVKRLT 203
                + T H AF F           L++E L E+K L+
Sbjct: 66  SKLSNLKTPHLAFDFLTFNWKTHYMTLEYEVLGEIKDLS 104
>pdb|1G5Z|A Chain A, Crystal Structure Of Lyme Disease Antigen Outer Surface
           Protein C (Ospc) From Borrelia Burgdorferi Strain N40
          Length = 164

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 39/158 (24%), Positives = 64/158 (39%), Gaps = 18/158 (11%)

Query: 147 VDEKDAVLVNPKEAEQFVKESQVDYLAP-AIGTSHGAFKFKGEPKLDFERLQEVKRLTNI 205
           + E +AV++  KE E  +  + +D LA  AIG   G    +     +   L     +++ 
Sbjct: 10  ITESNAVVLAVKEVETLL--ASIDELATKAIGKKIGNNGLEANQSKNTSLLSGAYAISD- 66

Query: 206 PLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAE 265
            L+    + + +   K  +D       S     +   E    G++ +  D   R    A 
Sbjct: 67  -LIAEKLNVLKNEELKEKIDTAKQC--STEFTNKLKSEHAVLGLDNLTDDNAQR----AI 119

Query: 266 VRKVANEDKSQFDLRKFF-------SPAQLALKNVVKE 296
           ++K AN+DK   +L K F         AQ  LKN VKE
Sbjct: 120 LKKHANKDKGAAELEKLFKAVENLSKAAQDTLKNAVKE 157
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
          Length = 443

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 115 ELTSKVVKMAHNAGVSVEAELGRLMGIED--NISVDEKDAVLVNPKEAEQ 162
           E+TS++  M  N G   + +  R + I+D   + ++E+ A LVNP+E +Q
Sbjct: 194 EMTSQLQSMFQNLGG--QKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
          Length = 442

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 115 ELTSKVVKMAHNAGVSVEAELGRLMGIED--NISVDEKDAVLVNPKEAEQ 162
           E+TS++  M  N G   + +  R + I+D   + ++E+ A LVNP+E +Q
Sbjct: 193 EMTSQLQSMFQNLGG--QKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 240
>pdb|1K4E|A Chain A, Crystal Structure Of The Class D Beta-Lactamases Oxa-10
           Determined By Mad Phasing With Selenomethionine
 pdb|1K4E|B Chain B, Crystal Structure Of The Class D Beta-Lactamases Oxa-10
           Determined By Mad Phasing With Selenomethionine
          Length = 248

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+   +  ++        L L GA   SA+P  V +      G+++ 
Sbjct: 65  IKNEHQVFKWDGKPRAXKQWERD--------LTLRGAIQVSAVP--VFQQIAREVGEVRX 114

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 115 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 149
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
 pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
          Length = 449

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 115 ELTSKVVKMAHNAGVSVEAELGRLMGIED--NISVDEKDAVLVNPKEAEQ 162
           E+TS++  M  N G   + +  R + I+D   + ++E+ A LVNP+E +Q
Sbjct: 200 EMTSQLQSMFQNLGG--QKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 247
>pdb|1E4D|C Chain C, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
 pdb|1E4D|D Chain D, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
 pdb|1K55|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 7.5
 pdb|1K55|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 7.5
 pdb|1K57|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 6.0
 pdb|1K56|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 6.5
 pdb|1E4D|B Chain B, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
 pdb|1K56|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 6.5
 pdb|1E4D|A Chain A, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
 pdb|1K57|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 6.0
 pdb|1K54|B Chain B, Oxa-10 Class D Beta-Lactamase Partially Acylated With
           Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
           Acid
 pdb|1K54|A Chain A, Oxa-10 Class D Beta-Lactamase Partially Acylated With
           Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
           Acid
          Length = 246

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+     +++ +R     L L GA   SA+P  V +      G+++ 
Sbjct: 63  IKNEHQVFKWDGKPRA----MKQWER----DLTLRGAIQVSAVP--VFQQIAREVGEVRM 112

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 113 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 147
>pdb|1K4F|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
           1.6 A Resolution
 pdb|1K4F|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
           1.6 A Resolution
          Length = 248

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+     +++ +R     L L GA   SA+P  V +      G+++ 
Sbjct: 65  IKNEHQVFKWDGKPRA----MKQWER----DLTLRGAIQVSAVP--VFQQIAREVGEVRM 114

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 115 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 149
>pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
 pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
 pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
          Length = 366

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 14/61 (22%), Positives = 27/61 (43%)

Query: 44  LFIQTSEGAIKYMGIDMAVGMVKTMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103
           L +Q ++G +   G D+ + MV  +    PH P A  +     F+ C    +    +V +
Sbjct: 33  LLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL 92

Query: 104 D 104
           +
Sbjct: 93  E 93
>pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lactamase
 pdb|1E3U|A Chain A, Mad Structure Of Oxa10 Class D Beta-Lactamase
 pdb|1K57|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 6.0
 pdb|1K54|D Chain D, Oxa-10 Class D Beta-Lactamase Partially Acylated With
           Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
           Acid
 pdb|1EWZ|A Chain A, Crystal Structure Of The Oxa-10 Beta-Lactamase From
           Pseudomonas Aeruginosa
 pdb|1EWZ|B Chain B, Crystal Structure Of The Oxa-10 Beta-Lactamase From
           Pseudomonas Aeruginosa
 pdb|1E3U|C Chain C, Mad Structure Of Oxa10 Class D Beta-Lactamase
 pdb|1K57|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.0
 pdb|1K56|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.5
 pdb|1EWZ|C Chain C, Crystal Structure Of The Oxa-10 Beta-Lactamase From
           Pseudomonas Aeruginosa
 pdb|1K54|C Chain C, Oxa-10 Class D Beta-Lactamase Partially Acylated With
           Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
           Acid
 pdb|1EWZ|D Chain D, Crystal Structure Of The Oxa-10 Beta-Lactamase From
           Pseudomonas Aeruginosa
          Length = 246

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+     +++ +R     L L GA   SA+P  V +      G+++ 
Sbjct: 63  IKNEHQVFKWDGKPRA----MKQWER----DLTLRGAIQVSAVP--VFQQIAREVGEVRM 112

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 113 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 147
>pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
 pdb|1FOF|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
          Length = 246

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+     +++ +R     L L GA   SA+P  V +      G+++ 
Sbjct: 64  IKNEHQVFKWDGKPRA----MKQWER----DLTLRGAIQVSAVP--VFQQIAREVGEVRM 113

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 114 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 148
>pdb|2POL|A Chain A, Pol Iii (Beta Subunit) (E.C.2.7.7.7)
 pdb|2POL|B Chain B, Pol Iii (Beta Subunit) (E.C.2.7.7.7)
          Length = 366

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 14/61 (22%), Positives = 27/61 (43%)

Query: 44  LFIQTSEGAIKYMGIDMAVGMVKTMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103
           L +Q ++G +   G D+ + MV  +    PH P A  +     F+ C    +    +V +
Sbjct: 33  LLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQL 92

Query: 104 D 104
           +
Sbjct: 93  E 93
>pdb|1K55|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 7.5
 pdb|1K55|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 7.5
          Length = 247

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+     +++ +R     L L GA   SA+P  V +      G+++ 
Sbjct: 64  IKNEHQVFKWDGKPRA----MKQWER----DLTLRGAIQVSAVP--VFQQIAREVGEVRM 113

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 114 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 148
>pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lactamase
          Length = 246

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+     +++ +R     L L GA   SA+P  V +      G+++ 
Sbjct: 63  IKNEHQVFKWPGKPRA----MKQWER----DLTLRGAIQVSAVP--VFQQIAREVGEVRM 112

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 113 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 147
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
           Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
           TWO ACTIVE Sites
 pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
           Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
           TWO ACTIVE Sites
          Length = 555

 Score = 26.6 bits (57), Expect = 3.8
 Identities = 9/38 (23%), Positives = 20/38 (51%)

Query: 192 DFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGD 229
           D E ++ VK    IP++    + +P++  +++L    D
Sbjct: 484 DLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRAD 521
>pdb|1M4V|A Chain A, Crystal Structure Of Set3, A Superantigen-Like Protein
           From Staphylococcus Aureus
 pdb|1M4V|B Chain B, Crystal Structure Of Set3, A Superantigen-Like Protein
           From Staphylococcus Aureus
          Length = 204

 Score = 26.6 bits (57), Expect = 3.8
 Identities = 14/30 (46%), Positives = 16/30 (52%)

Query: 268 KVANEDKSQFDLRKFFSPAQLALKNVVKER 297
           K  N  K  FDLR ++S A   LKNV   R
Sbjct: 6   KYENVTKDIFDLRDYYSGASKELKNVTGYR 35
>pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
           Complexed With Imipenem
 pdb|1H5X|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
           Complexed With Imipenem
 pdb|1H8Y|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13 In
           Complex With Meropenem
 pdb|1H8Y|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13 In
           Complex With Meropenem
 pdb|1H8Z|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
 pdb|1H8Z|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
          Length = 247

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA---SAIPDNVRKSYLDAGGDLKG 232
           I   H  FK+ G+P+     +++ +R     L L GA   SA+P  V +      G+++ 
Sbjct: 64  IKNEHQVFKWDGKPRA----MKQWER----DLSLRGAIQVSAVP--VFQQIAREVGEVRM 113

Query: 233 SKGVP-FEFLQESVKGGINKVNTDTDLRIAFIAEV 266
            K +  F +  +++ GGI+K   +  LRI+ + +V
Sbjct: 114 QKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQV 148
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
           Acetylglucosamine Within The Active Site
 pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
           Acetylglucosamine Within The Active Site
          Length = 348

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 94  VKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAE 134
           ++AG+  V+ID  H+AF     L   + ++    G SVE E
Sbjct: 23  LEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
 pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
 pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
 pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
 pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
 pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
 pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
 pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
           Galactosemia: X-Ray Structure Of The Human V94m-
           Substituted Udp-Galactose 4-Epimerase
          Length = 348

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 94  VKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAE 134
           ++AG+  V+ID  H+AF     L   + ++    G SVE E
Sbjct: 23  LEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
>pdb|3GAL|B Chain B, Crystal Structure Of Human Galectin-7 In Complex With
           Galactosamine
 pdb|1BKZ|A Chain A, Crystal Structure Of Human Galectin-7
 pdb|1BKZ|B Chain B, Crystal Structure Of Human Galectin-7
 pdb|4GAL|A Chain A, Crystal Structure Of Human Galectin-7 In Complex With
           Lactose
 pdb|4GAL|B Chain B, Crystal Structure Of Human Galectin-7 In Complex With
           Lactose
 pdb|5GAL|A Chain A, Crystal Structure Of Human Galectin-7 In Complex With
           N-Acetyllactosamine
 pdb|3GAL|A Chain A, Crystal Structure Of Human Galectin-7 In Complex With
           Galactosamine
 pdb|2GAL|A Chain A, Crystal Structure Of Human Galectin-7 In Complex With
           Galactose
 pdb|5GAL|B Chain B, Crystal Structure Of Human Galectin-7 In Complex With
           N-Acetyllactosamine
 pdb|2GAL|B Chain B, Crystal Structure Of Human Galectin-7 In Complex With
           Galactose
          Length = 135

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 70  ERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLEL 116
           ER P +P       G  FE    A   GF +V+ DA +H F   L L
Sbjct: 73  ERGPGVP----FQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPL 115
>pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
           With Nadh And Udp-Glucose
 pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
           With Nad+
 pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
           With Nadh And Udp-Glucose
          Length = 348

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 94  VKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAE 134
           ++AG+  V+ID  H+AF     L   + ++    G SVE E
Sbjct: 23  LEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,679,407
Number of Sequences: 13198
Number of extensions: 68295
Number of successful extensions: 192
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 33
length of query: 307
length of database: 2,899,336
effective HSP length: 88
effective length of query: 219
effective length of database: 1,737,912
effective search space: 380602728
effective search space used: 380602728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)