BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644808|ref|NP_206978.1| ABC transporter,
ATP-binding protein [Helicobacter pylori 26695]
(213 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 113 1e-26
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 108 6e-25
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 90 2e-19
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 79 5e-16
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 71 1e-13
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 70 1e-13
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 69 4e-13
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 65 8e-12
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 63 3e-11
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 37 0.001
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 27 1.8
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 27 1.8
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 27 1.8
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 27 1.8
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 27 1.8
pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of ... 27 2.3
pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovin... 26 3.0
pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase >... 25 5.2
pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae 25 5.2
pdb|1TPV|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 25 6.8
pdb|1TPW|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 25 6.8
pdb|1TPU|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 25 6.8
pdb|1TIM|A Chain A, Triose Phosphate Isomerase (E.C.5.3.1.1... 25 6.8
pdb|8TIM|A Chain A, Triose Phosphate Isomerase >gi|4558247|... 25 6.8
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 25 8.8
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 25 8.8
pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter P... 25 8.8
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 113 bits (283), Expect = 1e-26
Identities = 79/229 (34%), Positives = 132/229 (57%), Gaps = 17/229 (7%)
Query: 1 MIKAINISHAF---EKPLY--NGVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSG 55
MIK N++ + E+ +Y VNL+IK E ++I+G SGSGKST+L+ + + KP G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 56 TISLLEHQDIYALNSKKLLELRRLKVGIIFQSHYLFKGFSALENLQVASI------LAKQ 109
+ +++ L+ +L ++RR K+G +FQ L +ALEN+++ I ++ +
Sbjct: 61 EV-YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 110 EINHSLLEQLGIAHTLKQGVG----ELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTT 165
E LE L +A ++ +LSGGQQQR++IAR L+ P II+AD+PTG LD+
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179
Query: 166 SANQVISMLQNYITEKEGALVLATHDEHLA-FTCSQVYRLEKEVLIKEK 213
+ +++ +L+ E +V+ THD ++A F +Y + EV +EK
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 108 bits (269), Expect = 6e-25
Identities = 79/228 (34%), Positives = 126/228 (54%), Gaps = 17/228 (7%)
Query: 2 IKAINISHAF---EKPLY--NGVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGT 56
IK N++ + E+ +Y VNL+IK E ++I G SGSGKST L+ + + KP G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 57 ISLLEHQDIYALNSKKLLELRRLKVGIIFQSHYLFKGFSALENLQVASIL------AKQE 110
+ +++ L+ +L ++RR K+G +FQ L +ALEN+++ I + +E
Sbjct: 62 V-YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEE 120
Query: 111 INHSLLEQLGIAHTLKQGVG----ELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTS 166
LE L A ++ +LSGGQQQR++IAR L+ P II+ADEPTG LD+ +
Sbjct: 121 RRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKT 180
Query: 167 ANQVISMLQNYITEKEGALVLATHDEHLA-FTCSQVYRLEKEVLIKEK 213
++ +L+ E +V+ THD ++A F +Y + EV +EK
Sbjct: 181 GEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 90.1 bits (222), Expect = 2e-19
Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 18 GVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSK------ 71
GV+L + + ++I+G SGSGKST L + + KP+ G I ++ Q+I + K
Sbjct: 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDKDGQLKV 82
Query: 72 ---KLLELRRLKVGIIFQSHYLFKGFSALENLQVASILAKQEINHSLLEQLGIAHTLKQG 128
L L R ++ ++FQ L+ + LEN+ A I H E+ + + K G
Sbjct: 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-ALKYLAKVG 141
Query: 129 VGE---------LSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTSANQVISMLQNYIT 179
+ E LSGGQQQR+SIAR L+ +P +++ DEPT LD +V+ ++Q +
Sbjct: 142 IDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ-LA 200
Query: 180 EKEGALVLATHD 191
E+ +V+ TH+
Sbjct: 201 EEGKTMVVVTHE 212
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 78.6 bits (192), Expect = 5e-16
Identities = 54/187 (28%), Positives = 97/187 (50%), Gaps = 11/187 (5%)
Query: 19 VNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKK--LLEL 76
++L +K E + +LG SG GK+T L +A + +P+ G I + D + +K +
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI---GDKLVADPEKGIFVPP 78
Query: 77 RRLKVGIIFQSHYLFKGFSALENLQVASILAK---QEINH---SLLEQLGIAHTLKQGVG 130
+ + ++FQS+ L+ + +N+ L K QEI+ + E LG+ L +
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 131 ELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTSANQVISMLQNYITEKEGALVLATH 190
ELSGGQ+QR+++ R + +KP++ + DEP NLD ++ + L+ + + TH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 191 DEHLAFT 197
D+ A T
Sbjct: 199 DQVEAMT 205
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 70.9 bits (172), Expect = 1e-13
Identities = 51/175 (29%), Positives = 84/175 (47%), Gaps = 23/175 (13%)
Query: 17 NGVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLEL 76
+GV++ + + I+G +GSGKSTL++ + LK + G + E++DI +K+ EL
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV-YFENKDI---TNKEPAEL 79
Query: 77 RRLKVGIIFQSHYLFKGFSALENLQVASILAKQEINHSL-------------------LE 117
+ FQ+ K + LENL + I + +SL LE
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 118 QLGIAHTLKQGVGELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTSANQVIS 172
L ++H + GELSGGQ + + I R L PK+I+ DEP + A+ + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 70.5 bits (171), Expect = 1e-13
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 18 GVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELR 77
G++L + + + ++G +G+GK+T LS +A +++ G I + QDI +K +
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-IFNGQDI---TNKPAHVIN 79
Query: 78 RLKVGIIFQSHYLFKGFSALENLQVASILAKQ--------EINHSLLEQLGIAHTLKQGV 129
R + ++ + +F + ENL + K E SL +L LKQ
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRL--KERLKQLG 137
Query: 130 GELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTSANQVISMLQNYITEKEGALVLAT 189
G LSGG+QQ L+I R L +PK++ DEP+ L ++V ++Q +EG +L
Sbjct: 138 GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQK--INQEGTTILLV 195
Query: 190 HDEHL 194
L
Sbjct: 196 EQNAL 200
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 68.9 bits (167), Expect = 4e-13
Identities = 50/175 (28%), Positives = 84/175 (47%), Gaps = 23/175 (13%)
Query: 17 NGVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLEL 76
+GV++ + + I+G +GSGKSTL++ + LK + G + E++DI +K+ EL
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV-YFENKDI---TNKEPAEL 79
Query: 77 RRLKVGIIFQSHYLFKGFSALENLQVASILAKQEINHSL-------------------LE 117
+ FQ+ K + LENL + I + +SL LE
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 118 QLGIAHTLKQGVGELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTSANQVIS 172
L ++H + GELSGGQ + + I R L PK+I+ D+P + A+ + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFN 194
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 64.7 bits (156), Expect = 8e-12
Identities = 51/201 (25%), Positives = 91/201 (44%), Gaps = 20/201 (9%)
Query: 18 GVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISL-----------LEHQDIY 66
G+ ++P E A++G +GSGKST+ + L + +P G + L H+ +
Sbjct: 35 GLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVA 94
Query: 67 ALNSKKLLELRRLKVGIIFQSHYLFKGFSALENLQVASILAKQEINHSLLEQL--GIAHT 124
A+ + + R L+ I + G + ++ + A + HS + L G
Sbjct: 95 AVGQEPQVFGRSLQENIAY-------GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 147
Query: 125 LKQGVGELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTSANQVISMLQNYITEKEGA 184
+ + +LSGGQ+Q +++AR L +KP ++I D+ T LD S QV +L +
Sbjct: 148 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 207
Query: 185 LVLATHDEHLAFTCSQVYRLE 205
++L T L + LE
Sbjct: 208 VLLITQHLSLVEQADHILFLE 228
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 62.8 bits (151), Expect = 3e-11
Identities = 57/189 (30%), Positives = 89/189 (46%), Gaps = 23/189 (12%)
Query: 14 PLYNGVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKL 73
P +NL I +++A++G SGSGKST+ S + + G I + H L L
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHD----LREYTL 412
Query: 74 LELRRLKVGIIFQSHYLFKGFSALENLQVASILAKQEINHSLLEQLGIAHT--------- 124
LR +V ++ Q+ +LF A +A +Q + E +A+
Sbjct: 413 ASLRN-QVALVSQNVHLFNDTVANN---IAYARTEQYSREQIEEAARMAYAMDFINKMDN 468
Query: 125 -LKQGVGE----LSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTTSANQVISMLQNYIT 179
L +GE LSGGQ+QR++IAR L + I+I DE T LDT S + + L +
Sbjct: 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQ 527
Query: 180 EKEGALVLA 188
+ +LV+A
Sbjct: 528 KNRTSLVIA 536
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.4 bits (85), Expect = 0.001
Identities = 42/176 (23%), Positives = 83/176 (46%), Gaps = 13/176 (7%)
Query: 23 IKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVG 82
++ E L ++G +G+GKSTLL+ A G+I Q + A ++ KL L R +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAG-QPLEAWSATKLA-LHRAYLS 79
Query: 83 IIFQSHYLFKGFSALENLQVASILAKQEINHSLLEQLGIAHTLKQGVGELSGGQQQRLSI 142
+ + L Q + E+ + + L + L + +LSGG+ QR+ +
Sbjct: 80 QQQTPPFATPVWHYLTLHQHDK--TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 137
Query: 143 ARVL-------SKKPKIIIADEPTGNLDTTSANQVISMLQNYITEKEGALVLATHD 191
A V+ + ++++ DEP +LD + + +L + + ++ A+V ++HD
Sbjct: 138 AAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKIL-SALCQQGLAIVXSSHD 192
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 26.9 bits (58), Expect = 1.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 23 IKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVG 82
+K + ++G+ GSGK+T + LA K G LL D +++ L L KVG
Sbjct: 95 LKDRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVG 153
Query: 83 I 83
+
Sbjct: 154 V 154
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 26.9 bits (58), Expect = 1.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 23 IKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVG 82
+K + ++G+ GSGK+T + LA K G LL D +++ L L KVG
Sbjct: 94 LKDRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVG 152
Query: 83 I 83
+
Sbjct: 153 V 153
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 26.9 bits (58), Expect = 1.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 23 IKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVG 82
+K + ++G+ GSGK+T + LA K G LL D +++ L L KVG
Sbjct: 94 LKDRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVG 152
Query: 83 I 83
+
Sbjct: 153 V 153
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 26.9 bits (58), Expect = 1.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 23 IKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVG 82
+K + ++G+ GSGK+T + LA K G LL D +++ L L KVG
Sbjct: 95 LKDRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVG 153
Query: 83 I 83
+
Sbjct: 154 V 154
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 26.9 bits (58), Expect = 1.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 23 IKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVG 82
+K + ++G+ GSGK+T + LA K G LL D +++ L L KVG
Sbjct: 95 LKDRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVG 153
Query: 83 I 83
+
Sbjct: 154 V 154
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 26.6 bits (57), Expect = 2.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 158 PTGNLDTTSANQVISMLQNYITE--KEGALVLATHDEH 193
P G L +++I + YI + ++GAL++AT D H
Sbjct: 17 PGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWH 54
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 26.2 bits (56), Expect = 3.0
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 11/77 (14%)
Query: 1 MIKAINISHAFEKPLYNGVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLL 60
++KAI IS+ ++P KP + S S ++ + T++ + TI L
Sbjct: 60 LVKAIQISYNPDQPS--------KPNNIESATKNSKSMMEEIMKY-ETLISTHESTIRFL 110
Query: 61 EHQDIYALNSKKLLELR 77
Q+IY NS+K++ LR
Sbjct: 111 --QEIYNSNSQKIVNLR 125
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 25.4 bits (54), Expect = 5.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 31 ILGVSGSGKSTLLSHLATML 50
++GVSGSGKS + S +A L
Sbjct: 13 LMGVSGSGKSAVASEVAHQL 32
>pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae
Length = 365
Score = 25.4 bits (54), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (63%)
Query: 27 ESLAILGVSGSGKSTLLSHLATMLKPNS 54
+++AILG SGKS L++ LA + S
Sbjct: 171 KTVAILGGESSGKSVLVNKLAAVFNTTS 198
>pdb|1TPV|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn And Ser 96 Replaced By Pro (H95n,S96p)
Complexed With Phosphoglycolohydroxamate
pdb|1TPV|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn And Ser 96 Replaced By Pro (H95n,S96p)
Complexed With Phosphoglycolohydroxamate
Length = 247
Score = 25.0 bits (53), Expect = 6.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 106 LAKQEINHSLLEQLGIAHTLKQGVGELSGG------QQQRLSIARVLSKKPKIIIADEPT 159
L Q++ H+L E LG+ + + + E G +Q +IA + K+++A EP
Sbjct: 107 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPV 166
Query: 160 GNLDT 164
+ T
Sbjct: 167 WAIGT 171
>pdb|1TPW|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser 96
Replaced By Pro (S96p) Complexed With
Phosphoglycolohydroxamate
pdb|1TPW|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser 96
Replaced By Pro (S96p) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 25.0 bits (53), Expect = 6.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 106 LAKQEINHSLLEQLGIAHTLKQGVGELSGG------QQQRLSIARVLSKKPKIIIADEPT 159
L Q++ H+L E LG+ + + + E G +Q +IA + K+++A EP
Sbjct: 107 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPV 166
Query: 160 GNLDT 164
+ T
Sbjct: 167 WAIGT 171
>pdb|1TPU|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn (H95n) Complexed With
Phosphoglycolohydroxamate
pdb|1TPU|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn (H95n) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 25.0 bits (53), Expect = 6.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 106 LAKQEINHSLLEQLGIAHTLKQGVGELSGG------QQQRLSIARVLSKKPKIIIADEPT 159
L Q++ H+L E LG+ + + + E G +Q +IA + K+++A EP
Sbjct: 107 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPV 166
Query: 160 GNLDT 164
+ T
Sbjct: 167 WAIGT 171
>pdb|1TIM|A Chain A, Triose Phosphate Isomerase (E.C.5.3.1.1)
pdb|1TIM|B Chain B, Triose Phosphate Isomerase (E.C.5.3.1.1)
Length = 247
Score = 25.0 bits (53), Expect = 6.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 106 LAKQEINHSLLEQLGIAHTLKQGVGELSGG------QQQRLSIARVLSKKPKIIIADEPT 159
L Q++ H+L E LG+ + + + E G Q+ +IA + K+++A EP
Sbjct: 107 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFQETKAIADNVKDWSKVVLAYEPV 166
Query: 160 GNLDT 164
+ T
Sbjct: 167 WAIGT 171
>pdb|8TIM|A Chain A, Triose Phosphate Isomerase
pdb|8TIM|B Chain B, Triose Phosphate Isomerase
pdb|1TPH|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1) Complexed With
Phosphoglycolohydroxamate
pdb|1TPH|2 Chain 2, Triosephosphate Isomerase (E.C.5.3.1.1) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 25.0 bits (53), Expect = 6.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 106 LAKQEINHSLLEQLGIAHTLKQGVGELSGG------QQQRLSIARVLSKKPKIIIADEPT 159
L Q++ H+L E LG+ + + + E G +Q +IA + K+++A EP
Sbjct: 107 LIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPV 166
Query: 160 GNLDT 164
+ T
Sbjct: 167 WAIGT 171
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 24.6 bits (52), Expect = 8.8
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 29 LAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVGI 83
+ ++GV G+GK+T LA K + L+ D+Y + + L+ ++G+
Sbjct: 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV-GADVYRPAALEQLQQLGQQIGV 154
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 24.6 bits (52), Expect = 8.8
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 29 LAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVGI 83
+ ++GV G+GK+T LA K + L+ D+Y + + L+ ++G+
Sbjct: 101 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLV-GADVYRPAALEQLQQLGQQIGV 154
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
Length = 330
Score = 24.6 bits (52), Expect = 8.8
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 27 ESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLEL 76
+++ + G +GSGK+T + + + IS+ + ++I + K +L
Sbjct: 172 KNVIVCGGTGSGKTTYIKSIXEFIPKEERIISIEDTEEIVFKHHKNYTQL 221
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.133 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,654
Number of Sequences: 13198
Number of extensions: 40314
Number of successful extensions: 199
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 28
length of query: 213
length of database: 2,899,336
effective HSP length: 84
effective length of query: 129
effective length of database: 1,790,704
effective search space: 231000816
effective search space used: 231000816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)