BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644810|ref|NP_206980.1| hypothetical protein
[Helicobacter pylori 26695]
(224 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 28 0.66
pdb|1KFR|A Chain A, Structural Plasticity In The Eight-Heli... 27 1.5
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Compl... 27 2.5
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 26 3.3
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 26 3.3
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 26 3.3
pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapol... 26 3.3
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 26 3.3
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 26 3.3
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 26 3.3
pdb|1PLS| Pleckstrin (N-Terminal Pleckstrin Homology Doma... 26 4.2
pdb|1H97|A Chain A, Trematode Hemoglobin From Paramphistomu... 26 4.2
pdb|1E6V|B Chain B, Methyl-Coenzyme M Reductase From Methan... 26 4.2
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 25 9.5
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 28.5 bits (62), Expect = 0.66
Identities = 17/44 (38%), Positives = 23/44 (51%)
Query: 159 KDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPK 202
KD + + D+V ++ KNKE F K M K E LK+ PK
Sbjct: 218 KDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKLNISTPK 261
>pdb|1KFR|A Chain A, Structural Plasticity In The Eight-Helix Fold Of A
Trematode Hemoglobin
Length = 147
Score = 27.3 bits (59), Expect = 1.5
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 126 AYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKESFNK 184
A+ Q S F +M+ DG+KH + L + + M E+ N K + K
Sbjct: 38 AHPQYISHFSRLEGHTIENVMQSDGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGK 96
>pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
Length = 524
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (49%)
Query: 156 QNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKG 189
QNLKD+L E +V K K SF +A G
Sbjct: 71 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAG 104
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 26.2 bits (56), Expect = 3.3
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 128 LQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFN----KNKE--- 180
L E S +S + I + G+K V+Q LK+ +++++ V+ + N K+K+
Sbjct: 89 LIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKNTS 148
Query: 181 ---SFNKAMDKGVES---LKEKAKDLPKNMLDPKANQT 212
+F K ++K + + KE K L ML+ K+ T
Sbjct: 149 TPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDT 186
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 26.2 bits (56), Expect = 3.3
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 128 LQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFN----KNKE--- 180
L E S +S + I + G+K V+Q LK+ +++++ V+ + N K+K+
Sbjct: 89 LIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTS 148
Query: 181 ---SFNKAMDKGVES---LKEKAKDLPKNMLDPKANQT 212
+F K ++K + + KE K L ML+ K+ T
Sbjct: 149 TPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDT 186
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 26.2 bits (56), Expect = 3.3
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 128 LQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFN----KNKE--- 180
L E S +S + I + G+K V+Q LK+ +++++ V+ + N K+K+
Sbjct: 90 LIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTS 149
Query: 181 ---SFNKAMDKGVES---LKEKAKDLPKNMLDPKANQT 212
+F K ++K + + KE K L ML+ K+ T
Sbjct: 150 TPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDT 187
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 26.2 bits (56), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 177 KNKESFNKAMDKGVESLKEKAKDLPKNMLDPKAN 210
K NK +DK VE +KE+ KD +L AN
Sbjct: 109 KTLRETNKILDKVVERIKERMKDSNVKLLWGTAN 142
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 26.2 bits (56), Expect = 3.3
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 128 LQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFN----KNKE--- 180
L E S +S + I + G+K V+Q LK+ +++++ V+ + N K+K+
Sbjct: 90 LIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTS 149
Query: 181 ---SFNKAMDKGVES---LKEKAKDLPKNMLDPKANQT 212
+F K ++K + + KE K L ML+ K+ T
Sbjct: 150 TPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDT 187
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 26.2 bits (56), Expect = 3.3
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 128 LQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFN----KNKE--- 180
L E S +S + I + G+K V+Q LK+ +++++ V+ + N K+K+
Sbjct: 89 LIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTS 148
Query: 181 ---SFNKAMDKGVES---LKEKAKDLPKNMLDPKANQT 212
+F K ++K + + KE K L ML+ K+ T
Sbjct: 149 TPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDT 186
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 26.2 bits (56), Expect = 3.3
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 128 LQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFN----KNKE--- 180
L E S +S + I + G+K V+Q LK+ +++++ V+ + N K+K+
Sbjct: 135 LIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTS 194
Query: 181 ---SFNKAMDKGVES---LKEKAKDLPKNMLDPKANQT 212
+F K ++K + + KE K L ML+ K+ T
Sbjct: 195 TPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDT 232
>pdb|1PLS| Pleckstrin (N-Terminal Pleckstrin Homology Domain) Mutant With Leu
Glu (His)6 Added To The C Terminus (Ins(G105-Lehhhhhh))
(Nmr, 25 Structures)
Length = 113
Score = 25.8 bits (55), Expect = 4.2
Identities = 13/42 (30%), Positives = 22/42 (51%)
Query: 169 VKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKAN 210
VK FN K + ++ G+E K+K+ + PK M+ K +
Sbjct: 12 VKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGS 53
>pdb|1H97|A Chain A, Trematode Hemoglobin From Paramphistomum Epiclitum
pdb|1H97|B Chain B, Trematode Hemoglobin From Paramphistomum Epiclitum
Length = 147
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/59 (23%), Positives = 24/59 (39%)
Query: 126 AYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKESFNK 184
A+ Q S F +M+ +G+KH + L + + M E+ N K + K
Sbjct: 38 AHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGK 96
>pdb|1E6V|B Chain B, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|E Chain E, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 443
Score = 25.8 bits (55), Expect = 4.2
Identities = 16/68 (23%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
Query: 140 SVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKD 199
+V K M++ G + ++ ++ DN E ++DE++ ++ ++ + M G L + +
Sbjct: 62 TVGGKGMKIPG-REMDVDIVDNAEAIADEIEKMIRVYQDDDTNVEPMYDGKRLLVQLPSE 120
Query: 200 LPKNMLDP 207
K M DP
Sbjct: 121 RVKVMADP 128
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 24.6 bits (52), Expect = 9.5
Identities = 28/102 (27%), Positives = 46/102 (44%), Gaps = 21/102 (20%)
Query: 128 LQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFN--------KNK 179
L E S +S + I + G+K V+Q LK E+ D+V N ++ K+K
Sbjct: 90 LIEASMTYSDNTANNKIIKEIGGIKKVKQRLK----ELGDKVTNPVRYDIELQYYSPKSK 145
Query: 180 E------SFNKAMDKGVES---LKEKAKDLPKNMLDPKANQT 212
+ +F K ++K + + KE K L ML+ K+ T
Sbjct: 146 KDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDT 187
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,200,547
Number of Sequences: 13198
Number of extensions: 47676
Number of successful extensions: 106
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 14
length of query: 224
length of database: 2,899,336
effective HSP length: 85
effective length of query: 139
effective length of database: 1,777,506
effective search space: 247073334
effective search space used: 247073334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)