BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644811|ref|NP_206981.1| lysyl-tRNA synthetase
(lysS) [Helicobacter pylori 26695]
(501 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed ... 466 e-132
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal ... 460 e-130
pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase >gi|4388837|pd... 124 3e-29
pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (... 119 1e-27
pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6... 119 1e-27
pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspart... 80 4e-16
pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna... 80 4e-16
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-G... 75 2e-14
pdb|1KRS| Mol_id: 1; Molecule: Lysyl-Trna Synthetase (Pro... 63 7e-11
pdb|12AS|A Chain A, Asparagine Synthetase Mutant C51a, C315... 31 0.37
pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillu... 31 0.37
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 30 0.82
pdb|1K6K|A Chain A, Crystal Structure Of Clpa, An Aaa+ Chap... 30 0.82
pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9... 28 3.1
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trif... 28 3.1
pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18) 28 3.1
pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transi... 28 3.1
pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79a... 28 3.1
pdb|1LJ2|A Chain A, Recognition Of Eif4g By Rotavirus Nsp3 ... 27 4.1
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 466 bits (1199), Expect = e-132
Identities = 254/504 (50%), Positives = 333/504 (65%), Gaps = 29/504 (5%)
Query: 4 NQYIQQRIHKANSLREEGKNPYQNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCES---- 59
N ++ R K +LRE+G + N +R T+ ++ + K+ E+ E+
Sbjct: 15 NNELKTRREKLANLREQGI-AFPNDFRRDHTSDQLHAEF-------DGKENEELEALNIE 66
Query: 60 --IVGRVKLLRLMGKACFIKVEDESTILQVYVSQNEL-----NDEFKSLKKHLEVGDIVL 112
+ GR+ R+MGKA F+ ++D +Q+YV++++L N++FK ++GDI+
Sbjct: 67 VAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKW----DLGDILG 122
Query: 113 VKGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVNPSVKDV 172
KG F TKTGELSIH E +L+K + PLP+KFHGL D E RYRQRYLDLI N ++
Sbjct: 123 AKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNT 182
Query: 173 FKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELY 232
FK RS I+S +R+F GF+EVETPMM IPGGA ARPFIT+HNAL+++ YLRIAPELY
Sbjct: 183 FKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELY 242
Query: 233 LKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLK 292
LKRL+VGGFE VFEINRNFRNEG+ HNPEFTM+E Y AY Y+DLIEL++ LF L +
Sbjct: 243 LKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQ 302
Query: 293 TLNLDSKIIYNDMEVDFNQTSVISYLDALETIGGISKDI----LEKEDRLLAYLLEQGIK 348
+ +++ Y D+ +DF + L E I + L+ D A GI
Sbjct: 303 DILGKTEVTYGDVTLDFGKP--FEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIH 360
Query: 349 VEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPLARRNDSNPNIADRFELFIAGK 408
VE + G+++ E F+ E LI PTF+T+YP E+SPLARRND NP I DRFE FI G+
Sbjct: 361 VEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR 420
Query: 409 EIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDR 468
EI NGFSELND DQ +RF +QVA K+ GD+EA + DEDYV AL HG+PPTAG GIGIDR
Sbjct: 421 EIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDR 480
Query: 469 LVMLLTGAKSIKDVILFPAMRPVK 492
+VML T + +I+DVILFPAMRPVK
Sbjct: 481 MVMLFTNSHTIRDVILFPAMRPVK 504
>pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
T Lysyl_adenylate Intermediate
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
L
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
Length = 504
Score = 460 bits (1184), Expect = e-130
Identities = 250/504 (49%), Positives = 328/504 (64%), Gaps = 29/504 (5%)
Query: 4 NQYIQQRIHKANSLREEGKNPYQNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCES---- 59
N ++ R K +LR++G + N +R T+ E++ + KD ++ ES
Sbjct: 15 NDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEF-------DAKDNQELESLNIE 66
Query: 60 --IVGRVKLLRLMGKACFIKVEDESTILQVYVSQNEL-----NDEFKSLKKHLEVGDIVL 112
+ GR+ R+MGKA F+ ++D +Q+YV+++ L ND+FK ++GDI+
Sbjct: 67 VSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKW----DLGDIIG 122
Query: 113 VKGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVNPSVKDV 172
+G F T+TGELSIH E +L+K + PLP+KFHGL D E+RYRQRYLDLI N +
Sbjct: 123 ARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQT 182
Query: 173 FKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELY 232
F RS I++++R+F GF+EVETPMM IPGGA+ARPFIT+HNAL+++ YLRIAPELY
Sbjct: 183 FVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELY 242
Query: 233 LKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLK 292
LKRL+VGGFE VFEINRNFRNEG+ HNPEFTM+E Y AY Y DLIEL++ LF L +
Sbjct: 243 LKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQ 302
Query: 293 TLNLDSKIIYNDMEVDFNQTSVISYLDALETIGGISKDI----LEKEDRLLAYLLEQGIK 348
+ +K+ Y + DF + L E I + L+ D A GI
Sbjct: 303 EVLGTTKVTYGEHVFDFGKP--FEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGIT 360
Query: 349 VEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPLARRNDSNPNIADRFELFIAGK 408
VE + G+++ E FD E LI PTF+T+YP E+SPLARRND NP I DRFE FI G+
Sbjct: 361 VEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR 420
Query: 409 EIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDR 468
EI NGFSELND DQ ERF+ QV K GD+EA + DEDYV AL +G+PPTAG GIGIDR
Sbjct: 421 EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDR 480
Query: 469 LVMLLTGAKSIKDVILFPAMRPVK 492
++ML T + +I+DVILFPAMRP K
Sbjct: 481 MIMLFTNSHTIRDVILFPAMRPQK 504
>pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-Trna Synthetase
Length = 438
Score = 124 bits (310), Expect = 3e-29
Identities = 122/445 (27%), Positives = 204/445 (45%), Gaps = 47/445 (10%)
Query: 60 IVGRVKLLRLMGKACFIKVEDESTILQVYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFA 119
+ G V ++ +G F+ + D I+Q+ + +++ E L L D+V V+G
Sbjct: 21 VAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNF 80
Query: 120 TKTGELSIHAL--EFHILSKTIVPLPEKFHGL--SDIELRYRQRYLDLIVNPSVKDVFKK 175
T +L L + +L++ PLP G ++++ R R++DL P V +FK
Sbjct: 81 TPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLR-RPEVMAIFKI 139
Query: 176 RSLIVSSVRKFFEMEGFLEVETPMM--HPIPGGANARPFITYHNALEVERYLRIAPELYL 233
RS + +VR FF GF+E+ TP + GG P + E + +L +P+LY
Sbjct: 140 RSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYF----EEDAFLAESPQLYK 195
Query: 234 KRLIVGGFEAVFEINRNFRNEGMDHS-HNPEFTMIEFYWAY-HTYEDLIELSKRL----F 287
+ ++ G + V+EI FR E + + H E I+ A+ E+++ +RL
Sbjct: 196 EIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAI 255
Query: 288 DYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDALETIGGISKDILEKEDRLLAYLLEQGI 347
+Y+ + + I+ ++E +SY ALE +G + K+I ED I
Sbjct: 256 NYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGED----------I 305
Query: 348 KVEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPL-ARRNDSNPNIADRFELFIA 406
E GK + +E++ F+ QYP E P + D+ P I F+L
Sbjct: 306 DTEGERLLGK-------YMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYR 358
Query: 407 GKEIANGFSELNDPLDQLERFKNQVAE--KEKGDEEAQYMDEDYVWALAHGMPPTAGQGI 464
G EI++G Q E + + E KEKG + E Y+ A +GMPP G G+
Sbjct: 359 GVEISSG--------GQREHRHDILVEQIKEKGLNPESF--EFYLKAFRYGMPPHGGFGL 408
Query: 465 GIDRLVMLLTGAKSIKDVILFPAMR 489
G +RL+ + +I++VILFP R
Sbjct: 409 GAERLIKQMLDLPNIREVILFPRDR 433
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 119 bits (297), Expect = 1e-27
Identities = 122/483 (25%), Positives = 209/483 (43%), Gaps = 76/483 (15%)
Query: 48 LEEPKDKEKCESIVGRVKLLRLMGKA-CFIKVEDESTILQVYVSQNELNDEFKSLKK--- 103
L+E KD +K RV R G F+ + +++++Q V N+ K++ K
Sbjct: 29 LDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAG 88
Query: 104 HLEVGDIVLVKGF------PFATKTGE-LSIHALEFHILSKTIVPLPEKFHGLS------ 150
L + IVLV+G P + T + L IH + + +S+T LP S
Sbjct: 89 SLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA 148
Query: 151 ----------DIELRYRQRYLDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMM 200
D L YR L + N ++ F+ ++ + R++ + F EV TP +
Sbjct: 149 EAAGLPVVNLDTRLDYRVIDLRTVTNQAI---FRIQAGVCELFREYLATKKFTEVHTPKL 205
Query: 201 HPIPGGANARPF-ITYHNALEVERYLRIAPELYLKRLIVGGFEAVFEINRNFRNEGMD-H 258
P + F +TY + YL +P+ ++LIV FE V+EI FR E + H
Sbjct: 206 LGAPSEGGSSVFEVTYFKG---KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTH 262
Query: 259 SHNPEFTMIEFYWAYHT-YEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSV--- 314
H EFT ++ A+ Y ++++ LF ++ L K +++E+ Q V
Sbjct: 263 RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSEL---PKRFAHEIELVRKQYPVEEF 319
Query: 315 ----------ISYLDALETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFD 364
++Y + +E + K+I + ED + E GKL+ + +D
Sbjct: 320 KLPKDGKMVRLTYKEGIEMLRAAGKEIGDFED----------LSTENEKFLGKLVRDKYD 369
Query: 365 HFVEHQLINPTFVTQYPIEISPLARRND-SNPNIADRFELFIAGKEIANGFSELNDPLDQ 423
+ + ++P+EI P D +NP ++ ++ F+ G+EI +G ++D
Sbjct: 370 -------TDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALL 422
Query: 424 LERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVI 483
ER K E + DY ++G PP AG GIG++R+VM K+I+
Sbjct: 423 QERMKAHGLSPEDPGLK------DYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRAS 476
Query: 484 LFP 486
LFP
Sbjct: 477 LFP 479
>pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASZ|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASY|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
pdb|1ASY|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
Length = 490
Score = 119 bits (297), Expect = 1e-27
Identities = 122/483 (25%), Positives = 209/483 (43%), Gaps = 76/483 (15%)
Query: 48 LEEPKDKEKCESIVGRVKLLRLMGKA-CFIKVEDESTILQVYVSQNELNDEFKSLKK--- 103
L+E KD +K RV R G F+ + +++++Q V N+ K++ K
Sbjct: 32 LDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAG 91
Query: 104 HLEVGDIVLVKGF------PFATKTGE-LSIHALEFHILSKTIVPLPEKFHGLS------ 150
L + IVLV+G P + T + L IH + + +S+T LP S
Sbjct: 92 SLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA 151
Query: 151 ----------DIELRYRQRYLDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMM 200
D L YR L + N ++ F+ ++ + R++ + F EV TP +
Sbjct: 152 EAAGLPVVNLDTRLDYRVIDLRTVTNQAI---FRIQAGVCELFREYLATKKFTEVHTPKL 208
Query: 201 HPIPGGANARPF-ITYHNALEVERYLRIAPELYLKRLIVGGFEAVFEINRNFRNEGMD-H 258
P + F +TY + YL +P+ ++LIV FE V+EI FR E + H
Sbjct: 209 LGAPSEGGSSVFEVTYFKG---KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTH 265
Query: 259 SHNPEFTMIEFYWAYHT-YEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSV--- 314
H EFT ++ A+ Y ++++ LF ++ L K +++E+ Q V
Sbjct: 266 RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSEL---PKRFAHEIELVRKQYPVEEF 322
Query: 315 ----------ISYLDALETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFD 364
++Y + +E + K+I + ED + E GKL+ + +D
Sbjct: 323 KLPKDGKMVRLTYKEGIEMLRAAGKEIGDFED----------LSTENEKFLGKLVRDKYD 372
Query: 365 HFVEHQLINPTFVTQYPIEISPLARRND-SNPNIADRFELFIAGKEIANGFSELNDPLDQ 423
+ + ++P+EI P D +NP ++ ++ F+ G+EI +G ++D
Sbjct: 373 -------TDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALL 425
Query: 424 LERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVI 483
ER K E + DY ++G PP AG GIG++R+VM K+I+
Sbjct: 426 QERMKAHGLSPEDPGLK------DYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRAS 479
Query: 484 LFP 486
LFP
Sbjct: 480 LFP 482
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 80.5 bits (197), Expect = 4e-16
Identities = 71/246 (28%), Positives = 120/246 (47%), Gaps = 23/246 (9%)
Query: 59 SIVGRVKLLRLMGKACFIKVEDESTILQVYVSQN---------ELNDEFKSLKKHLEVGD 109
++ G V R +G FI + D I+QV+ + EL +EF ++V
Sbjct: 19 TLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFC-----IQVTG 73
Query: 110 IVLV---KGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVN 166
V K TGE+ + A I+++ V LP + ++ E R + RYLDL
Sbjct: 74 TVRARDEKNINRDMATGEIEVLASSLTIINRADV-LPLDSNHVNTEEARLKYRYLDLR-R 131
Query: 167 PSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMM-HPIPGGANARPFITYHNALEVERY- 224
P + K R+ I S VR+F + GFL++ETPM+ P GA R ++ + + Y
Sbjct: 132 PEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA--RDYLVPSRVHKGKFYA 189
Query: 225 LRIAPELYLKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSK 284
L +P+L+ + L++ GF+ ++I + FR+E + PEFT I+ ++ T + E+ +
Sbjct: 190 LPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVME 249
Query: 285 RLFDYL 290
L +L
Sbjct: 250 ALVRHL 255
Score = 53.1 bits (126), Expect = 7e-08
Identities = 36/121 (29%), Positives = 60/121 (48%), Gaps = 13/121 (10%)
Query: 367 VEHQLINPTFVTQYPIEISPLARRNDSNPNIADRFELFIAGKEIANGFSEL-NDPLDQLE 425
+ H +P +T ++ +P +A+ +++ I G E+ G + N + Q
Sbjct: 447 MHHPFTSPKDMTAAELKAAP-------ENAVANAYDMVINGYEVGGGSVRIHNGDMQQTV 499
Query: 426 RFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVILF 485
+ E+E+ ++ +D AL +G PP AG G+DRL MLLTG +I+DVI F
Sbjct: 500 FGILGINEEEQREKFGFLLD-----ALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAF 554
Query: 486 P 486
P
Sbjct: 555 P 555
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 80.5 bits (197), Expect = 4e-16
Identities = 71/246 (28%), Positives = 120/246 (47%), Gaps = 23/246 (9%)
Query: 59 SIVGRVKLLRLMGKACFIKVEDESTILQVYVSQN---------ELNDEFKSLKKHLEVGD 109
++ G V R +G FI + D I+QV+ + EL +EF ++V
Sbjct: 19 TLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFC-----IQVTG 73
Query: 110 IVLV---KGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVN 166
V K TGE+ + A I+++ V LP + ++ E R + RYLDL
Sbjct: 74 TVRARDEKNINRDMATGEIEVLASSLTIINRADV-LPLDSNHVNTEEARLKYRYLDLR-R 131
Query: 167 PSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMM-HPIPGGANARPFITYHNALEVERY- 224
P + K R+ I S VR+F + GFL++ETPM+ P GA R ++ + + Y
Sbjct: 132 PEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA--RDYLVPSRVHKGKFYA 189
Query: 225 LRIAPELYLKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSK 284
L +P+L+ + L++ GF+ ++I + FR+E + PEFT I+ ++ T + E+ +
Sbjct: 190 LPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVME 249
Query: 285 RLFDYL 290
L +L
Sbjct: 250 ALVRHL 255
Score = 53.1 bits (126), Expect = 7e-08
Identities = 36/121 (29%), Positives = 60/121 (48%), Gaps = 13/121 (10%)
Query: 367 VEHQLINPTFVTQYPIEISPLARRNDSNPNIADRFELFIAGKEIANGFSEL-NDPLDQLE 425
+ H +P +T ++ +P +A+ +++ I G E+ G + N + Q
Sbjct: 447 MHHPFTSPKDMTAAELKAAP-------ENAVANAYDMVINGYEVGGGSVRIHNGDMQQTV 499
Query: 426 RFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVILF 485
+ E+E+ ++ +D AL +G PP AG G+DRL MLLTG +I+DVI F
Sbjct: 500 FGILGINEEEQREKFGFLLD-----ALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAF 554
Query: 486 P 486
P
Sbjct: 555 P 555
>pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
Length = 580
Score = 74.7 bits (182), Expect = 2e-14
Identities = 61/220 (27%), Positives = 114/220 (51%), Gaps = 19/220 (8%)
Query: 119 ATKTGELSIHALEFHILSKTI-VPLPEKFHGLSDIE----LRYRQRYLDLIVNPSVKDVF 173
AT E+ + ALE +KT P+ + G + E LR + RYLDL +++
Sbjct: 86 ATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENL 144
Query: 174 KKRSLIVSSVRKFFEMEGFLEVETPMM-HPIPGGANARPFIT-YHNALEVERYLRIAPEL 231
+ R ++ ++ F + EGF++VETP + P GA R F+ Y + + L +P+L
Sbjct: 145 RLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA--RDFLVPYRHEPGLFYALPQSPQL 202
Query: 232 YLKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLL 291
+ + L+V G + F+I R FR+E + P+FT ++ ++ ED++EL++RL ++
Sbjct: 203 FKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVF 262
Query: 292 KTLNLDSKIIYNDMEVDFNQTSVISYLDALETIGGISKDI 331
+ + + ++ + F + +SY +A+E G D+
Sbjct: 263 R------EALGVELPLPFPR---LSYEEAMERYGSDKPDL 293
Score = 52.8 bits (125), Expect = 9e-08
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 376 FVTQYPIEISPLARRNDSNPNIADRFELFIAGKEIANGFSELNDPLDQLERFKNQVAEKE 435
F + +P ++ PL ++ A ++L + G E+ G ++DP Q F+
Sbjct: 445 FTSPHPEDL-PLLEKDPGRVR-ALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGI--- 499
Query: 436 KGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVILFPAMRPVKN 493
G+EE + ++ AL +G PP G G+DRL+ L+TG+ SI++VI FP + K+
Sbjct: 500 -GEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556
>pdb|1KRS| Mol_id: 1; Molecule: Lysyl-Trna Synthetase (Product Of Lyss Gene);
Chain: Null; Domain: Anticodon-Binding Domain (Residues
40 - 149); Ec: 6.1.1.6; Engineered: Yes
pdb|1KRT| Mol_id: 1; Molecule: Lysyl-Trna Synthetase (Product Of Lyss Gene);
Chain: Null; Domain: Anticodon-Binding Domain (Residues
40 - 149); Ec: 6.1.1.6; Engineered: Yes
Length = 120
Score = 63.2 bits (152), Expect = 7e-11
Identities = 34/84 (40%), Positives = 54/84 (63%), Gaps = 9/84 (10%)
Query: 59 SIVGRVKLLRLMGKACFIKVEDESTILQVYVSQNEL-----NDEFKSLKKHLEVGDIVLV 113
++ GR+ R+MGKA F+ ++D +Q+YV++++L N++FK ++GDI+
Sbjct: 40 AVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKW----DLGDILGA 95
Query: 114 KGFPFATKTGELSIHALEFHILSK 137
KG F TKTGELSIH E +L+K
Sbjct: 96 KGKLFKTKTGELSIHCTELRLLTK 119
>pdb|12AS|A Chain A, Asparagine Synthetase Mutant C51a, C315a Complexed With
L-Asparagine And Amp
pdb|12AS|B Chain B, Asparagine Synthetase Mutant C51a, C315a Complexed With
L-Asparagine And Amp
pdb|11AS|A Chain A, Asparagine Synthetase Mutant C51a, C315a Complexed With
L-Asparagine
pdb|11AS|B Chain B, Asparagine Synthetase Mutant C51a, C315a Complexed With
L-Asparagine
Length = 330
Score = 30.8 bits (68), Expect = 0.37
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 394 NPNIADRFELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALA 453
NP + D FEL G + + K+Q+A GDE+ ++ ++ AL
Sbjct: 240 NPVLEDAFELSSMGIRV------------DADTLKHQLALT--GDEDR--LELEWHQALL 283
Query: 454 HG-MPPTAGQGIGIDRLVMLL 473
G MP T G GIG RL MLL
Sbjct: 284 RGEMPQTIGGGIGQSRLTMLL 304
>pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillus Subtilis
Length = 224
Score = 30.8 bits (68), Expect = 0.37
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 48 LEEPKDKEKCESIVGRVKLLRLMGKACFIKVEDESTILQVYVSQNELNDEFKSLKKHLEV 107
L E K K E +G+ L+ + K EDE+ + +++ ELN+E ++ +V
Sbjct: 66 LWETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNEEMPNIINITKV 125
Query: 108 -GDIVLVKGFPFATKTGELSIHALEF 132
+I+ + + F + E S+H F
Sbjct: 126 MEEILSIVKYHFKIEFNEESLHYYRF 151
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 29.6 bits (65), Expect = 0.82
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 161 LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALE 220
L L+ NPS ++ + S+ + ++R+ E+E F+E TP++ + +P +++ L+
Sbjct: 32 LALLSNPSAREALEACSVDLVALRQ--ELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQ 89
>pdb|1K6K|A Chain A, Crystal Structure Of Clpa, An Aaa+ Chaperone-Like
Regulator Of Clpap Protease Implication To The
Functional Difference Of Two Atpase Domains
Length = 143
Score = 29.6 bits (65), Expect = 0.82
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 161 LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALE 220
L L+ NPS ++ + S+ + ++R+ E+E F+E TP++ + +P +++ L+
Sbjct: 32 LALLSNPSAREALEACSVDLVALRQ--ELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQ 89
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
Length = 264
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/86 (19%), Positives = 40/86 (45%)
Query: 179 IVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIV 238
I ++++KF E EGF V H I G + P + ++++ E L+ ++ ++
Sbjct: 149 IGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVN 208
Query: 239 GGFEAVFEINRNFRNEGMDHSHNPEF 264
G + + + + + D S + ++
Sbjct: 209 AGKKEIRTMKDGWTVKTKDRSLSAQY 234
>pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
Length = 263
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/86 (19%), Positives = 40/86 (45%)
Query: 179 IVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIV 238
I ++++KF E EGF V H I G + P + ++++ E L+ ++ ++
Sbjct: 148 IGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVN 207
Query: 239 GGFEAVFEINRNFRNEGMDHSHNPEF 264
G + + + + + D S + ++
Sbjct: 208 AGKKEIRTMKDGWTVKTKDRSLSAQY 233
>pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18)
Length = 264
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/86 (19%), Positives = 40/86 (45%)
Query: 179 IVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIV 238
I ++++KF E EGF V H I G + P + ++++ E L+ ++ ++
Sbjct: 149 IGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVN 208
Query: 239 GGFEAVFEINRNFRNEGMDHSHNPEF 264
G + + + + + D S + ++
Sbjct: 209 AGKKEIRTMKDGWTVKTKDRSLSAQY 234
>pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transition-State
Inhibitor Complex
Length = 265
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/86 (19%), Positives = 40/86 (45%)
Query: 179 IVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIV 238
I ++++KF E EGF V H I G + P + ++++ E L+ ++ ++
Sbjct: 149 IGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVN 208
Query: 239 GGFEAVFEINRNFRNEGMDHSHNPEF 264
G + + + + + D S + ++
Sbjct: 209 AGKKEIRTMKDGWTVKTKDRSLSAQY 234
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/86 (19%), Positives = 40/86 (45%)
Query: 179 IVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIV 238
I ++++KF E EGF V H I G + P + ++++ E L+ ++ ++
Sbjct: 149 IGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVN 208
Query: 239 GGFEAVFEINRNFRNEGMDHSHNPEF 264
G + + + + + D S + ++
Sbjct: 209 AGKKEIRTMKDGWTVKTKDRSLSAQY 234
>pdb|1LJ2|A Chain A, Recognition Of Eif4g By Rotavirus Nsp3 Reveals A Basis For
Mrna Circularization
pdb|1LJ2|B Chain B, Recognition Of Eif4g By Rotavirus Nsp3 Reveals A Basis For
Mrna Circularization
Length = 110
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 288 DYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDALETIGGISKDILEKEDRLLAYLLEQGI 347
++ L+++ LD +I D+E N I+ L A + + + ++++ D+L +L+ +G+
Sbjct: 41 EWYLRSMELDPEI-KADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKL--FLMFKGL 97
Query: 348 KVEPNLTY 355
N Y
Sbjct: 98 IQRSNYQY 105
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,892,097
Number of Sequences: 13198
Number of extensions: 126489
Number of successful extensions: 323
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 23
length of query: 501
length of database: 2,899,336
effective HSP length: 92
effective length of query: 409
effective length of database: 1,685,120
effective search space: 689214080
effective search space used: 689214080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)