BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644651|ref|NP_206820.1| hypothetical protein
[Helicobacter pylori 26695]
(469 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, ... 28 2.2
pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, ... 28 2.9
pdb|2HVM| Hevamine A At 1.8 Angstrom Resolution >gi|14215... 27 3.8
pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Hea... 27 4.9
pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 27 4.9
pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 27 4.9
pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, ... 27 4.9
pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 27 4.9
pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of B... 27 4.9
pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 27 4.9
pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-... 27 4.9
pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Co... 27 4.9
pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton He... 27 4.9
pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 27 4.9
pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1S... 27 6.4
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv)... 26 8.4
>pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 28.1 bits (61), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D +R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAMRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAARLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|2HVM| Hevamine A At 1.8 Angstrom Resolution
pdb|1LLO| Hevamine A (A Plant EndochitinaseLYSOZYME) COMPLEXED WITH
Allosamidin
pdb|1HVQ| Glycosidase, Chitin Degradation, Multifunctional Enzyme Mol_id: 1;
Molecule: Hevamine A; Chain: Null; Ec: 3.2.1.14,
3.2.1.17; Heterogen: N-,N'-,N''-Triacetyl-Chitotriose;
Other_details: Plant EndochitinaseLYSOZYME
Length = 273
Score = 27.3 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 21 GYRMDLEHFNTLYYEESPKKAYEYSKQFTK 50
G D+EH +TLY+++ + YSKQ K
Sbjct: 121 GIDFDIEHGSTLYWDDLARYLSAYSKQGKK 150
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Asn
(D206n)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Ser (D10s)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Asn
(D199n)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Glu (T204e)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Ser
(E175s)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With
Cys 17 Replaced By Lys
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAERLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Gln
(E175q)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Val (T204v)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3)
pdb|1NGJ| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Mg
pdb|1NGI| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Ca
pdb|1HPM| 44k Atpase Fragment (N-Terminal) Of 7okda Heat-Shock Cognate
Protein (E.C.3.6.1.3)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 88 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 142
>pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Ser
(D206s)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Asn (D10n)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 66 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 120
>pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Ser
(D199s)
Length = 386
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 107 DNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAI 165
D R G + V+ + K +M++ND+ + +VQ E + K FY EEV +
Sbjct: 69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQV----EYKGETKSFYPEEVSSMV 123
>pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 594
Score = 26.6 bits (57), Expect = 6.4
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 159 EEVQKAIKEIDSSKKHNINMERSRVEVSEILNNT---YSNLDKYEAYQGLLNPAVSYLSG 215
+EV +++K+ SSK+ N + + ++S++L L KY + L + + G
Sbjct: 301 QEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG 360
>pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 26.2 bits (56), Expect = 8.4
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 152 RAKEFYYEEVQKAIKEIDSSKKH-------NINMERSRVEVSEILNNTYSNLDKYEAYQG 204
R + FYY + +A EID ++ NM + R + I+++ D + + G
Sbjct: 722 RQEGFYYTNMLEAPPEIDRVVQYTYEIARLQANMGQFRAALRRIMDD-----DDWVRFGG 776
Query: 205 LL----------NPAVSYLSGLFYALNGDENKGLGYLNEAYGISQSPFVAQDLVFFKN 252
+L P L GL ++ + +E GL Y Y + F V F N
Sbjct: 777 VLRTVRVKFFDARPPDDILQGLPFSYDTNEKGGLSYATIKYATETTIFYLIYNVEFSN 834
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,595,748
Number of Sequences: 13198
Number of extensions: 111195
Number of successful extensions: 308
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 24
length of query: 469
length of database: 2,899,336
effective HSP length: 92
effective length of query: 377
effective length of database: 1,685,120
effective search space: 635290240
effective search space used: 635290240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)