BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644812|ref|NP_206982.1| serine
hydroxymethyltransferase (glyA) [Helicobacter pylori 26695]
(416 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resol... 444 e-126
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstrom... 442 e-125
pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymeth... 427 e-120
pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic S... 330 1e-91
pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransfe... 325 8e-90
pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransfe... 314 1e-86
pdb|1B8G|B Chain B, 1-Aminocyclopropane-1-Carboxylate Synth... 30 0.66
pdb|1I9C|A Chain A, Glutamate Mutase From Clostridium Cochl... 30 0.66
pdb|1B1A| Glutamate Mutase (B12-Binding Subunit), Nmr, Mi... 29 1.1
pdb|1ID8|A Chain A, Nmr Structure Of Glutamate Mutase (B12-... 29 1.1
pdb|1CCW|A Chain A, Structure Of The Coenzyme B12 Dependent... 28 1.5
pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) ... 27 3.3
pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x) 27 3.3
pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris >gi... 27 3.3
pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell... 27 4.3
pdb|1EKG|A Chain A, Mature Human Frataxin 27 4.3
pdb|1LY7|A Chain A, The Solution Structure Of The The C-Ter... 27 4.3
pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed Wi... 27 5.6
pdb|3SEB| Staphylococcal Enterotoxin B 27 5.6
pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant... 26 9.5
pdb|2TPT| Structural And Theoretical Studies Suggest Doma... 26 9.5
pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant... 26 9.5
pdb|1CTN| Chitinase A (E.C.3.2.1.14) (Ph 5.5, 4 Degrees C) 26 9.5
pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S... 26 9.5
>pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 444 bits (1142), Expect = e-126
Identities = 218/405 (53%), Positives = 293/405 (71%), Gaps = 2/405 (0%)
Query: 9 DSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKRYYGGCEVV 68
D+E+++ + +E RQ EH+E+IASENYT VM+A GS LTNKYAEGYP KRYYGGCE V
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYV 71
Query: 69 DKIESLAIERAKKLFNCQFANVQAHSGSQANNAVYHALLKPYDKILGMDLSCGGHLTHGA 128
D +E LAI+RAK+LF +ANVQ HSGSQAN AVY ALL+P D +LGM+L+ GGHLTHG+
Sbjct: 72 DIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS 131
Query: 129 KVSLTGKHYQSFSYGVNLDGYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIAD 188
V+ +GK Y YG++ G+IDY + K A+ KP++I+ GFSAY +D+ K REIAD
Sbjct: 132 PVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIAD 191
Query: 189 EVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRGPRGGIILT--NDEEIAAK 246
+GA L D+AHVAGLV G + +P PH HVV++TTHKTL GPRGG+IL EE+ K
Sbjct: 192 SIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKK 251
Query: 247 IDKAIFPGTQGGPLMHVIAAKAVGFKENLKPEFKAYAQLVKSNMQVLAKALKEKNHKLVS 306
++ A+FPG QGGPLMHVIA KAV KE ++PEFK Y Q V N + + + E+ +K+VS
Sbjct: 252 LNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVS 311
Query: 307 GGTSNHLLLMDFLDKPYSGKDADIALGNAGITVNKNTIPGETRSPFVTSGIRIGSAALSA 366
GGT NHL L+D +DK +GK+AD ALG A ITVNKN++P + +SPFVTSGIR+G+ A++
Sbjct: 312 GGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITR 371
Query: 367 RGMGAKEFEIIGNKISDILNDINNVSLQLHVKEELKAMVNQFPVY 411
RG E + + + D+L+ IN+ ++ +K ++ + ++PVY
Sbjct: 372 RGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVY 416
>pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 442 bits (1138), Expect = e-125
Identities = 217/405 (53%), Positives = 293/405 (71%), Gaps = 2/405 (0%)
Query: 9 DSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKRYYGGCEVV 68
D+E+++ + +E RQ EH+E+IASENYT VM+A GS LTNKYAEGYP KRY+GGCE V
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFGGCEYV 71
Query: 69 DKIESLAIERAKKLFNCQFANVQAHSGSQANNAVYHALLKPYDKILGMDLSCGGHLTHGA 128
D +E LAI+RAK+LF +ANVQ HSGSQAN AVY ALL+P D +LGM+L+ GGHLTHG+
Sbjct: 72 DIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS 131
Query: 129 KVSLTGKHYQSFSYGVNLDGYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIAD 188
V+ +GK Y YG++ G+IDY + K A+ KP++I+ GFSAY +D+ K REIAD
Sbjct: 132 PVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIAD 191
Query: 189 EVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRGPRGGIILT--NDEEIAAK 246
+GA L D+AHVAGLV G + +P PH HVV++TTHKTL GPRGG+IL EE+ K
Sbjct: 192 SIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKK 251
Query: 247 IDKAIFPGTQGGPLMHVIAAKAVGFKENLKPEFKAYAQLVKSNMQVLAKALKEKNHKLVS 306
++ A+FPG QGGPLMHVIA KAV KE ++PEFK Y Q V N + + + E+ +K+VS
Sbjct: 252 LNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVS 311
Query: 307 GGTSNHLLLMDFLDKPYSGKDADIALGNAGITVNKNTIPGETRSPFVTSGIRIGSAALSA 366
GGT NHL L+D +DK +GK+AD ALG A ITVNKN++P + +SPFVTSGIR+G+ A++
Sbjct: 312 GGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITR 371
Query: 367 RGMGAKEFEIIGNKISDILNDINNVSLQLHVKEELKAMVNQFPVY 411
RG E + + + D+L+ IN+ ++ +K ++ + ++PVY
Sbjct: 372 RGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVY 416
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-Formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-Formyl Tetrahydrofolate
Length = 419
Score = 427 bits (1098), Expect = e-120
Identities = 222/404 (54%), Positives = 289/404 (70%), Gaps = 2/404 (0%)
Query: 4 FLEQTDSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKRYYG 63
+L Q D ++F I +E KRQ+ +E+IASEN+ +VMEA GSVLTNKYAEGYP +RYYG
Sbjct: 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYG 62
Query: 64 GCEVVDKIESLAIERAKKLFNCQFANVQAHSGSQANNAVYHALLKPYDKILGMDLSCGGH 123
GCE VD +E LA ERAK+LF + ANVQ HSG+QAN AVY +L+ D +LGM+LS GGH
Sbjct: 63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGH 122
Query: 124 LTHGAKVSLTGKHYQSFSYGVNLDGY-IDYEEALKIAQSVKPEIIVCGFSAYPREIDFKK 182
LTHG+ V+ +G Y +YGV+ + + IDY++ + A+ +P++IV SAYPR IDF K
Sbjct: 123 LTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAK 182
Query: 183 FREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRGPRGGIILTNDEE 242
FREIADEVGA L+ D+AH+AGLV G H +P P+ H V++TTHKTLRGPRGG+IL E+
Sbjct: 183 FREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC-QEQ 241
Query: 243 IAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLKPEFKAYAQLVKSNMQVLAKALKEKNH 302
A +IDKAIFPG QGGPLMHVIAAKAV F E L+ +FKAYA+ V N + LA AL+ +
Sbjct: 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF 301
Query: 303 KLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAGITVNKNTIPGETRSPFVTSGIRIGSA 362
LVSGGT NHLLL+D + +GK A+ L GITVNKNTIP + SPFVTSGIRIG+A
Sbjct: 302 TLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTA 361
Query: 363 ALSARGMGAKEFEIIGNKISDILNDINNVSLQLHVKEELKAMVN 406
A++ RG G +E + I I +L ++ + ++ + A+ +
Sbjct: 362 AVTTRGFGLEEMDEIAAIIGLVLKNVGSEQALEEARQRVAALTD 405
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 330 bits (847), Expect = 1e-91
Identities = 180/405 (44%), Positives = 260/405 (63%), Gaps = 25/405 (6%)
Query: 1 MAYFLEQTDSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKR 60
+A L+ +D+E++++I +E RQ LE+IASEN+ +V+EA+GS L NKY+EGYP +R
Sbjct: 8 LAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQR 67
Query: 61 YYGGCEVVDKIESLAIERAKKLFN----CQFANVQAHSGSQANNAVYHALLKPYDKILGM 116
YYGG E +D++E+L +RA + + C NVQ +SGS AN AVY AL++P+ +I+G+
Sbjct: 68 YYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGL 127
Query: 117 DLSCGGHLTHG-----AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCG 170
DL GGHLTHG K+S T ++S +Y VN D GYIDY+ + A+ P++I+ G
Sbjct: 128 DLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAG 187
Query: 171 FSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRG 230
S Y R +D+ + R+IADE GA L+ D+AH++GLVV G PF HCHVV++TTHKTLRG
Sbjct: 188 TSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 247
Query: 231 PRGGIIL-----------TNDE---EIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLK 276
R G+I T E + + I+ A+FPG QGGP H IA AV K+ +
Sbjct: 248 CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 307
Query: 277 PEFKAYAQLVKSNMQVLAKALKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAG 336
PEFK Y + V +N + L+ AL E +K+V+GG+ NHL+L+D K G A+ L
Sbjct: 308 PEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACS 367
Query: 337 ITVNKNTIPGETRSPFVTSGIRIGSAALSARGMGAKEFEIIGNKI 381
I NKNT PG+ +S SG+R+G+ AL++RG+ K+F+ + + I
Sbjct: 368 IACNKNTCPGD-KSALRPSGLRLGTPALTSRGLLEKDFQKVAHFI 411
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (Human)
Length = 470
Score = 325 bits (832), Expect = 8e-90
Identities = 181/432 (41%), Positives = 268/432 (61%), Gaps = 29/432 (6%)
Query: 1 MAYFLEQTDSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKR 60
+A L+ +D E++ +I +E RQ LE+IASEN+ +V+EA+GS L NKY+EGYP +R
Sbjct: 12 LAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQR 71
Query: 61 YYGGCEVVDKIESLAIERAKKLFN----CQFANVQAHSGSQANNAVYHALLKPYDKILGM 116
YYGG E +D++E+L +RA + + C NVQ +SGS AN AVY AL++P+ +I+G+
Sbjct: 72 YYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGL 131
Query: 117 DLSCGGHLTHG-----AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCG 170
DL GGHLTHG K+S T ++S Y VN D GYI+Y++ + A+ P++I+ G
Sbjct: 132 DLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAG 191
Query: 171 FSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRG 230
S Y R +++ + R+IADE GA L+ D+AH++GLV G PF HCHVV++TTHKTLRG
Sbjct: 192 TSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRG 251
Query: 231 PRGGIIL-----------TNDE---EIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLK 276
R G+I T E + + I+ A+FPG QGGP H IA AV K+ +
Sbjct: 252 CRAGMIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 311
Query: 277 PEFKAYAQLVKSNMQVLAKALKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAG 336
EFK Y V +N + L++AL E +K+V+GG+ NHL+L+D K G A+ L
Sbjct: 312 LEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACS 371
Query: 337 ITVNKNTIPGETRSPFVTSGIRIGSAALSARGMGAKEFEIIGNKISDILNDINNVSLQLH 396
I NKNT PG+ RS SG+R+G+ AL++RG+ K+F+ K++ ++ ++LQ+
Sbjct: 372 IACNKNTCPGD-RSALRPSGLRLGTPALTSRGLLEKDFQ----KVAHFIHRGIELTLQIQ 426
Query: 397 VKEELKAMVNQF 408
+ A + +F
Sbjct: 427 SDTGVAATLKEF 438
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 314 bits (805), Expect = 1e-86
Identities = 178/428 (41%), Positives = 259/428 (59%), Gaps = 29/428 (6%)
Query: 5 LEQTDSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKRYYGG 64
L+ +D+E++ +I +E RQ LE+IASEN+ +V+EA+GS L NKY+EGYP +RYYGG
Sbjct: 20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGG 79
Query: 65 CEVVDKIESLAIERAKKLFN----CQFANVQAHSGSQANNAVYHALLKPYDKILGMDLSC 120
E +D++E L +RA + ++ C NVQ +SGS AN AVY AL++P+ +I G+DL
Sbjct: 80 TEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLDLPD 139
Query: 121 GGHLTHG-----AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCGFSAY 174
GGHLTHG K+S T ++S Y V + GYI+Y++ + A P++I+ G S Y
Sbjct: 140 GGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCY 199
Query: 175 PREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRGPRGG 234
R +D+ + R+IAD+ GA L D AH++GLV G PF HCHVV++TTHKTLRG R G
Sbjct: 200 SRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 259
Query: 235 IIL-----------TNDE---EIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLKPEFK 280
I T E E+ + I+ A+FPG QGGP H IA AV K+ EFK
Sbjct: 260 XIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAXTTEFK 319
Query: 281 AYAQLVKSNMQVLAKALKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAGITVN 340
Y V +N + L+ AL E +K+V+GG+ NHL+L D K G A+ L I N
Sbjct: 320 IYQLQVLANCRALSDALTELGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSIACN 379
Query: 341 KNTIPGETRSPFVTSGIRIGSAALSARGMGAKEFEIIGNKISDILNDINNVSLQLHVKEE 400
KNT PG+ +S SG+R+G+ AL++RG+ ++F+ K++ ++ ++LQ+
Sbjct: 380 KNTCPGD-KSALRPSGLRLGTPALTSRGLLEEDFQ----KVAHFIHRGIELTLQIQSHXA 434
Query: 401 LKAMVNQF 408
KA + +F
Sbjct: 435 TKATLKEF 442
>pdb|1B8G|B Chain B, 1-Aminocyclopropane-1-Carboxylate Synthase
pdb|1B8G|A Chain A, 1-Aminocyclopropane-1-Carboxylate Synthase
Length = 429
Score = 29.6 bits (65), Expect = 0.66
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 209 EHAHPFPHCHVVSSTTHKT-LRGPRGGIILTNDEEIAAKIDKAIFPGTQGGPLMHVIAAK 267
E++ + HVV S + L G R G I +ND+ + A K G H+++A
Sbjct: 255 ENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAM 314
Query: 268 AVGFKENLKPEFKAYAQLVKSNMQVLAKALKEKNHKLVSG 307
K L K+ + K LK++ KLVSG
Sbjct: 315 LSDKK------------LTKNYIAENHKRLKQRQKKLVSG 342
>pdb|1I9C|A Chain A, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
pdb|1I9C|C Chain C, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
Length = 137
Score = 29.6 bits (65), Expect = 0.66
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 2/70 (2%)
Query: 144 VNLDGYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAG 203
VN+ E +K A K + I+ EID K R+ DE G L G + +V G
Sbjct: 35 VNIGVLSPQENFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG--LEGILLYVGG 92
Query: 204 LVVTGEHAHP 213
+V G+ P
Sbjct: 93 NIVVGKQHWP 102
>pdb|1B1A| Glutamate Mutase (B12-Binding Subunit), Nmr, Minimized Average
Structure
Length = 137
Score = 28.9 bits (63), Expect = 1.1
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 2/70 (2%)
Query: 144 VNLDGYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAG 203
VN+ E +K A K + I+ EID K R+ DE G L G + +V G
Sbjct: 35 VNIGVLSPQEVFIKAAIETKADAILLSSLYGQGEIDCKGLRQKCDEAG--LEGILLYVGG 92
Query: 204 LVVTGEHAHP 213
+V G+ P
Sbjct: 93 NIVVGKQHWP 102
>pdb|1ID8|A Chain A, Nmr Structure Of Glutamate Mutase (B12-Binding Subunit)
Complexed With The Vitamin B12 Nucleotide
pdb|1BE1| Glutamate Mutase (B12-Binding Subunit), Nmr, Minimized Average
Structure
pdb|1FMF|A Chain A, Refined Solution Structure Of The (13c,15n-Labeled) B12-
Binding Subunit Of Glutamate Mutase From Clostridium
Tetanomorphum
Length = 137
Score = 28.9 bits (63), Expect = 1.1
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 144 VNLDGYIDYEEALKIAQSVKPEIIVCGFSAYPR-EIDFKKFREIADEVGALLLGDIAHVA 202
VN+ E+ + A K ++I C S Y + EID K RE DE G L G V
Sbjct: 35 VNIGVLSSQEDFINAAIETKADLI-CVSSLYGQGEIDCKGLREKCDEAG--LKGIKLFVG 91
Query: 203 GLVVTGEHAHP 213
G +V G+ P
Sbjct: 92 GNIVVGKQNWP 102
>pdb|1CCW|A Chain A, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CCW|C Chain C, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CB7|A Chain A, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1CB7|C Chain C, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
Length = 137
Score = 28.5 bits (62), Expect = 1.5
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 2/70 (2%)
Query: 144 VNLDGYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAG 203
VN+ E +K A K + I+ EID K R+ DE G L G + +V G
Sbjct: 35 VNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG--LEGILLYVGG 92
Query: 204 LVVTGEHAHP 213
+V G+ P
Sbjct: 93 NIVVGKQHWP 102
>pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) Acyl-Enzyme Complex
pdb|1QME|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x)
Length = 702
Score = 27.3 bits (59), Expect = 3.3
Identities = 49/251 (19%), Positives = 85/251 (33%), Gaps = 43/251 (17%)
Query: 149 YIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTG 208
Y+D EE+ Q +P + F A I + I E+ A A V G+ T
Sbjct: 81 YLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEA------AEVKGIDFTT 134
Query: 209 EHAHPFPHCHVVSS-----------TTHKTLRGPRG------GIILTNDEEIAAKIDKA- 250
+P+ SS K+L G G I+ D I + D+
Sbjct: 135 SPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDRLG 194
Query: 251 -IFPGTQ----------------GGPLMHVIAAKAVGFKENLKPEFKAYAQLVKSNMQVL 293
I PGT+ PL + + F+E +K ++ + ++L
Sbjct: 195 NIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEIL 254
Query: 294 AKALKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAGITVNKNTIPGETRSPFV 353
A + G + + D L + + + + ++ NT PG F
Sbjct: 255 ATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPG--GEVFN 312
Query: 354 TSGIRIGSAAL 364
+S ++I A +
Sbjct: 313 SSELKIADATI 323
>pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x)
Length = 675
Score = 27.3 bits (59), Expect = 3.3
Identities = 49/251 (19%), Positives = 85/251 (33%), Gaps = 43/251 (17%)
Query: 149 YIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTG 208
Y+D EE+ Q +P + F A I + I E+ A A V G+ T
Sbjct: 54 YLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEA------AEVKGIDFTT 107
Query: 209 EHAHPFPHCHVVSS-----------TTHKTLRGPRG------GIILTNDEEIAAKIDKA- 250
+P+ SS K+L G G I+ D I + D+
Sbjct: 108 SPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDRLG 167
Query: 251 -IFPGTQ----------------GGPLMHVIAAKAVGFKENLKPEFKAYAQLVKSNMQVL 293
I PGT+ PL + + F+E +K ++ + ++L
Sbjct: 168 NIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEIL 227
Query: 294 AKALKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAGITVNKNTIPGETRSPFV 353
A + G + + D L + + + + ++ NT PG F
Sbjct: 228 ATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPG--GEVFN 285
Query: 354 TSGIRIGSAAL 364
+S ++I A +
Sbjct: 286 SSELKIADATI 296
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 27.3 bits (59), Expect = 3.3
Identities = 13/32 (40%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
Query: 77 ERAKKLFNCQFANVQAHSGSQANNAVYHALLK 108
++AK+LFN + + AH G A N ++ LLK
Sbjct: 83 DKAKELFNYDYI-IPAHQGRGAENILFPVLLK 113
>pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
pdb|1GOZ|B Chain B, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
Length = 239
Score = 26.9 bits (58), Expect = 4.3
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 48 LTNKYAEGYPN---KRYYGGCEVVDKIESLAIERAKKLFNCQFANVQAHSGSQAN--NAV 102
L +KY + Y + YY C K + + K +C + V H+G+Q + ++
Sbjct: 73 LADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKSCMYGGVTEHNGNQLDKYRSI 132
Query: 103 YHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHY 137
+ + +L D+ ++ +HY
Sbjct: 133 TVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHY 167
>pdb|1EKG|A Chain A, Mature Human Frataxin
Length = 127
Score = 26.9 bits (58), Expect = 4.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 317 DFLDKPYSGKDADIALGNAGITV 339
D DKPY+ +D D++ G+ +TV
Sbjct: 29 DLADKPYTFEDYDVSFGSGVLTV 51
>pdb|1LY7|A Chain A, The Solution Structure Of The The C-Terminal Domain Of
Frataxin, The Protein Responsible For Friedreich Ataxia
Length = 121
Score = 26.9 bits (58), Expect = 4.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 317 DFLDKPYSGKDADIALGNAGITV 339
D DKPY+ +D D++ G+ +TV
Sbjct: 23 DLADKPYTFEDYDVSFGSGVLTV 45
>pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SE4| Staphylococcal Enterotoxin B Complexed With Lactose
pdb|1SE3| Staphylococcal Enterotoxin B Complexed With Gm3 Trisaccharide
pdb|1SBB|B Chain B, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1D5Z|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D5M|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1D5X|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D6E|C Chain C, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|2SEB|D Chain D, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
Length = 239
Score = 26.6 bits (57), Expect = 5.6
Identities = 18/95 (18%), Positives = 36/95 (36%), Gaps = 5/95 (5%)
Query: 48 LTNKYAEGYPN---KRYYGGCEVVDKIESLAIERAKKLFNCQFANVQAHSGSQAN--NAV 102
L +KY + Y + YY C K + + K C + V H+G+Q + ++
Sbjct: 73 LADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSI 132
Query: 103 YHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHY 137
+ + +L D+ ++ +HY
Sbjct: 133 TVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHY 167
>pdb|3SEB| Staphylococcal Enterotoxin B
Length = 238
Score = 26.6 bits (57), Expect = 5.6
Identities = 18/95 (18%), Positives = 36/95 (36%), Gaps = 5/95 (5%)
Query: 48 LTNKYAEGYPN---KRYYGGCEVVDKIESLAIERAKKLFNCQFANVQAHSGSQAN--NAV 102
L +KY + Y + YY C K + + K C + V H+G+Q + ++
Sbjct: 73 LADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSI 132
Query: 103 YHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHY 137
+ + +L D+ ++ +HY
Sbjct: 133 TVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHY 167
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N-Acetylchitooctaose (Nag)8
Length = 540
Score = 25.8 bits (55), Expect = 9.5
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 10/79 (12%)
Query: 98 ANNAVYHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVNLDGYIDYEEALK 157
A N++ H L YD DL GH T +L ++ + ++G AL
Sbjct: 355 AQNSMDHIFLMSYDFYGAFDLKNLGHQT-----ALNAPAWKPDTAYTTVNGV----NAL- 404
Query: 158 IAQSVKPEIIVCGFSAYPR 176
+AQ VKP IV G + Y R
Sbjct: 405 LAQGVKPGKIVVGTAMYGR 423
>pdb|2TPT| Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1OTP| Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|B Chain B, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1TPT| Thymidine Phosphorylase (E.C.2.4.2.4)
Length = 440
Score = 25.8 bits (55), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 170 GFSAYPREIDFKKFREIADEVGALLLGDIAHVA 202
GF +P D +FREI +VG ++G + +A
Sbjct: 132 GFDIFP---DDNRFREIIKDVGVAIIGQTSSLA 161
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N-Acetylchitooctaose (Nag)8
Length = 540
Score = 25.8 bits (55), Expect = 9.5
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 10/79 (12%)
Query: 98 ANNAVYHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVNLDGYIDYEEALK 157
A N++ H L YD DL GH T +L ++ + ++G AL
Sbjct: 355 AQNSMDHIFLMSYDFYGAFDLKNLGHQT-----ALNAPAWKPDTAYTTVNGV----NAL- 404
Query: 158 IAQSVKPEIIVCGFSAYPR 176
+AQ VKP IV G + Y R
Sbjct: 405 LAQGVKPGKIVVGTAMYGR 423
>pdb|1CTN| Chitinase A (E.C.3.2.1.14) (Ph 5.5, 4 Degrees C)
Length = 540
Score = 25.8 bits (55), Expect = 9.5
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 10/79 (12%)
Query: 98 ANNAVYHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVNLDGYIDYEEALK 157
A N++ H L YD DL GH T +L ++ + ++G AL
Sbjct: 355 AQNSMDHIFLMSYDFYGAFDLKNLGHQT-----ALNAPAWKPDTAYTTVNGV----NAL- 404
Query: 158 IAQSVKPEIIVCGFSAYPR 176
+AQ VKP IV G + Y R
Sbjct: 405 LAQGVKPGKIVVGTAMYGR 423
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
Length = 540
Score = 25.8 bits (55), Expect = 9.5
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 10/79 (12%)
Query: 98 ANNAVYHALLKPYDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVNLDGYIDYEEALK 157
A N++ H L YD DL GH T +L ++ + ++G AL
Sbjct: 355 AQNSMDHIFLMSYDFYGAFDLKNLGHQT-----ALNAPAWKPDTAYTTVNGV----NAL- 404
Query: 158 IAQSVKPEIIVCGFSAYPR 176
+AQ VKP IV G + Y R
Sbjct: 405 LAQGVKPGKIVVGTAMYGR 423
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,433,909
Number of Sequences: 13198
Number of extensions: 102319
Number of successful extensions: 338
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 24
length of query: 416
length of database: 2,899,336
effective HSP length: 91
effective length of query: 325
effective length of database: 1,698,318
effective search space: 551953350
effective search space used: 551953350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)