BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644813|ref|NP_206983.1| hypothetical protein
[Helicobacter pylori 26695]
(180 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EUO|A Chain A, Crystal Structure Of Nitrophorin 2 (Pro... 25 4.0
pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic ... 25 4.0
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 25 5.2
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 25 5.2
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Compl... 25 6.8
>pdb|1EUO|A Chain A, Crystal Structure Of Nitrophorin 2 (Prolixin-S)
Length = 180
Score = 25.4 bits (54), Expect = 4.0
Identities = 19/97 (19%), Positives = 33/97 (33%), Gaps = 9/97 (9%)
Query: 11 IDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRNDK 70
+D S K GL + ++G+ + F + +T RE +
Sbjct: 1 MDCSTNISPKQGLDKAKYFSGKWYVTHFLDKDPQVTDQYCSSFTPRESD---------GT 51
Query: 71 VENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNT 107
V+ ++ YN FY+ + L G Y T
Sbjct: 52 VKEALYHYNANKKTSFYNIGEGKLESSGLQYTAKYKT 88
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 117 VHKGHTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKER 172
++K T L + E++ K L +KL PKE + +P EF P ++ K+R
Sbjct: 271 IYKSLTNLSQEEQITKLLILKLRYFTPKE--IANLLGFPPEF---GFPEKITVKQR 321
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 25.0 bits (53), Expect = 5.2
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 87 YHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKGHTELGEGERLVKTLSMKLAQGLPKEW 146
Y +L+ ++ + F++ N P H GH + L KL W
Sbjct: 134 YGSCKLVENKKVIIEFSSPNIAKP------FHAGHLRSTIIGGFLANLYEKLG------W 181
Query: 147 KVFPSN---EWPKEFNILALPYEVFAKE 171
+V N +W K+F +LA+ +E + E
Sbjct: 182 EVIRMNYLGDWGKQFGLLAVGFERYGNE 209
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 25.0 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 120 GHTELGEGERLVKTLSMKLAQGLP 143
G LGEG +++KT K +GLP
Sbjct: 265 GRKLLGEGTQVLKTFPGKALEGLP 288
>pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
Length = 533
Score = 24.6 bits (52), Expect = 6.8
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 55 KREIEIAHNLILRNDKVENIVF----DYNGRNPERFYHKAQLLLREEG--FMNFTAYNTK 108
+R +E++ + ND +EN++ D+ P + A +L EG ++N + NT
Sbjct: 248 ERYVEVSPGV---NDTMENLLQSIKNDHEEIAPSTIFAAASIL---EGVPYINGSPQNTF 301
Query: 109 TPGHLHLYVHKGHTELGEGERLVKT-LSMKLAQGL 142
PG + L H+G G+ + +T L LAQ L
Sbjct: 302 VPGLVQLAEHEGTFIAGDDLKSGQTKLKSVLAQFL 336
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,156,241
Number of Sequences: 13198
Number of extensions: 47427
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)