BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644814|ref|NP_206984.1| hypothetical protein
[Helicobacter pylori 26695]
(267 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 36 0.005
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 35 0.007
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 33 0.034
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 30 0.22
pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (S... 29 0.64
pdb|1BM9|A Chain A, Replication Terminator Protein From Bac... 27 2.4
pdb|1F4K|A Chain A, Crystal Structure Of The Replication Te... 27 2.4
pdb|1LEN|C Chain C, Lectin (Lentil) (Monoclinic Crystal For... 26 4.1
pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recyc... 26 5.4
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 25 7.1
pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous... 25 9.2
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 35.8 bits (81), Expect = 0.005
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 62 QKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKT- 120
+K + ++ +DE SL ED+LDK ++ +K + + + ++ +
Sbjct: 29 KKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASL 88
Query: 121 -------TEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHA 173
EE AQ+ L T+ QK +A + S + K + A KD++K
Sbjct: 89 NRRIQLFEEELDRAQERLA----TALQKLEEAEKAADESERGMKVI--ESRAQKDEEKME 142
Query: 174 VKELKVKKEAH 184
++E+++K+ H
Sbjct: 143 IQEIQLKEAKH 153
Score = 25.4 bits (54), Expect = 7.1
Identities = 16/74 (21%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Query: 70 EKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKT-TEETQEAQ 128
E+ ++ E ++ E+++ V +N+K E A + D+ + E+K +++ +EA+
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236
Query: 129 KGLKVVEHTSTQKE 142
+ E + T+ E
Sbjct: 237 TRAEFAERSVTKLE 250
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 35.4 bits (80), Expect = 0.007
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 62 QKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVK-KQENDAFNMPTQTDQTQTEMKT 120
+K + ++ +DE SL ED+LDK ++ +K QE TD
Sbjct: 29 KKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASL 88
Query: 121 TEETQEAQKGL-KVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKV 179
Q ++ L + E +T + A+K + + A KD++K ++E+++
Sbjct: 89 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL 148
Query: 180 KKEAH 184
K+ H
Sbjct: 149 KEAKH 153
Score = 25.4 bits (54), Expect = 7.1
Identities = 16/74 (21%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Query: 70 EKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKT-TEETQEAQ 128
E+ ++ E ++ E+++ V +N+K E A + D+ + E+K +++ +EA+
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236
Query: 129 KGLKVVEHTSTQKE 142
+ E + T+ E
Sbjct: 237 TRAEFAERSVTKLE 250
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 33.1 bits (74), Expect = 0.034
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 59 SGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEM 118
S +Q + + K + E + K ++L K +V+K+ N AF D+ Q +
Sbjct: 59 SSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEAN-AFK-----DKLQAAV 112
Query: 119 KTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELK 178
+TT QE+QK K V S +E+ K PK K+A+ D KHA +
Sbjct: 113 QTT--VQESQKLAKEV--ASNMEETNK-----------KLAPKIKQAYDDFVKHAE---E 154
Query: 179 VKKEAHKEVPKK 190
V+K+ H+ K+
Sbjct: 155 VQKKLHEAATKQ 166
Score = 27.7 bits (60), Expect = 1.4
Identities = 22/106 (20%), Positives = 48/106 (44%), Gaps = 12/106 (11%)
Query: 88 DKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVA 147
++++K A +K ++ FN + ++ TQ+ K LK + + + + +
Sbjct: 10 EEMEKHAKEFQKTFSEQFN----------SLVNSKNTQDFNKALK--DGSDSVLQQLSAF 57
Query: 148 KKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANS 193
+ A K KEA + ++ K + ++AH +V K+AN+
Sbjct: 58 SSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANA 103
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.4 bits (67), Expect = 0.22
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 70 EKKDDEFESLNLDPSKQEDK-------LDKVADN--VKKQENDAFNMPTQTDQTQTEMKT 120
EKK + + L+L+ +E++ L+KV + +KK E+D M Q ++ E K
Sbjct: 949 EKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 121 TEETQEAQKGLKVVEHTSTQKESQAVAKKEISHK-KPKATPKDKEAHKDKDKHAVKEL-K 178
EE +V + T+ E + AK K K ++ + E K++ + +EL K
Sbjct: 1009 LEE--------RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 179 VKKEAHKE 186
+K++ E
Sbjct: 1061 IKRKLEGE 1068
>pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With Seryl-Hydroxamate-Amp
pdb|1SES|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With Seryl-Hydroxamate-Amp
pdb|1SET|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SET|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SRY|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SRY|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SER|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
pdb|1SER|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
Length = 421
Score = 28.9 bits (63), Expect = 0.64
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 123 ETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKE 182
E QE +K L+ V Q E VAK+ PKA P++KEA + K +E K +E
Sbjct: 36 EVQELKKRLQEV-----QTERNQVAKRV-----PKAPPEEKEALIARGKALGEEAKRLEE 85
Query: 183 AHKE 186
A +E
Sbjct: 86 ALRE 89
>pdb|1BM9|A Chain A, Replication Terminator Protein From Bacillus Subtilis
pdb|1BM9|B Chain B, Replication Terminator Protein From Bacillus Subtilis
Length = 122
Score = 26.9 bits (58), Expect = 2.4
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 8/65 (12%)
Query: 121 TEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVK 180
T QE GLK++E ++ KEI K P T + H+ D +K++KVK
Sbjct: 25 TMTEQERLYGLKLLEVLRSEF-------KEIGFK-PNHTEVYRSLHELLDDGILKQIKVK 76
Query: 181 KEAHK 185
KE K
Sbjct: 77 KEGAK 81
>pdb|1F4K|A Chain A, Crystal Structure Of The Replication Terminator ProteinB-
Site Dna Complex
pdb|1F4K|B Chain B, Crystal Structure Of The Replication Terminator ProteinB-
Site Dna Complex
Length = 122
Score = 26.9 bits (58), Expect = 2.4
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 8/65 (12%)
Query: 121 TEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVK 180
T QE GLK++E ++ KEI K P T + H+ D +K++KVK
Sbjct: 25 TMTEQERLYGLKLLEVLRSEF-------KEIGFK-PNHTEVYRSLHELLDDGILKQIKVK 76
Query: 181 KEAHK 185
KE K
Sbjct: 77 KEGAK 81
>pdb|1LEN|C Chain C, Lectin (Lentil) (Monoclinic Crystal Form)
pdb|2LAL|A Chain A, Lentil Lectin
pdb|2LAL|C Chain C, Lentil Lectin
pdb|1LES|A Chain A, Lentil Lectin Complexed With Sucrose
pdb|1LES|C Chain C, Lentil Lectin Complexed With Sucrose
pdb|1LEM|A Chain A, Lectin (Lentil) (Hexagonal Crystal Form)
pdb|1LEN|A Chain A, Lectin (Lentil) (Monoclinic Crystal Form)
Length = 181
Score = 26.2 bits (56), Expect = 4.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 48 VAPKETFLQTDSGMQKIGNTKDEKKD--------DEFESLNLDPSKQEDKLDKVADNVKK 99
+AP +T QT G + N+K+ K D F + DPS +E + +++K
Sbjct: 87 IAPVDTKPQTGGGYLGVFNSKEYDKTSQTVAVEFDTFYNAAWDPSNKERHIGIDVNSIKS 146
Query: 100 QENDAFNM 107
++N+
Sbjct: 147 VNTKSWNL 154
>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf)
From Escherichia Coli
Length = 185
Score = 25.8 bits (55), Expect = 5.4
Identities = 17/61 (27%), Positives = 31/61 (49%), Gaps = 1/61 (1%)
Query: 124 TQEAQKGL-KVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKE 182
T+E +K L K+V + Q + ++ K KA KDKE +D D+ + +++ +
Sbjct: 106 TEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTD 165
Query: 183 A 183
A
Sbjct: 166 A 166
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 25.4 bits (54), Expect = 7.1
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 136 HTSTQKESQAVAK--KEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANS 193
H++ +K ++ V K KE+ K K + K D D+ + ++ V +E + + +K S
Sbjct: 623 HSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVES 682
Query: 194 KTTLTKGHYLQV 205
+ K +L +
Sbjct: 683 AQSEQKNLFLVI 694
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 25.0 bits (53), Expect = 9.2
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 108 PTQTDQTQTEMKTTEETQEAQKGLK---VVEHTSTQKESQAV 146
P DQ QTE++ T E LK +E+T T ES V
Sbjct: 106 PAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESPKV 147
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.125 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,447,406
Number of Sequences: 13198
Number of extensions: 56566
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 15
length of query: 267
length of database: 2,899,336
effective HSP length: 87
effective length of query: 180
effective length of database: 1,751,110
effective search space: 315199800
effective search space used: 315199800
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)