BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644816|ref|NP_206986.1| hypothetical protein
[Helicobacter pylori 26695]
(95 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carbo... 26 0.81
pdb|1AYE| Human Procarboxypeptidase A2 24 2.4
pdb|1TII|C Chain C, Escherichia Coli Heat Labile Enterotoxi... 24 3.1
pdb|1PFO| Perfringolysin O 23 4.0
pdb|1CEI| Structure Determination Of The Colicin E7 Immun... 23 6.9
pdb|1UNK|A Chain A, Structure Of Colicin E7 Immunity Protei... 23 6.9
pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant... 23 6.9
pdb|1FVZ|A Chain A, The Structure Of Pitp Complexed To Phos... 22 8.9
pdb|1KXH|A Chain A, Crystal Structure Of The Complex Betwee... 22 8.9
pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha V... 22 8.9
pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutan... 22 8.9
pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutan... 22 8.9
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic A... 22 8.9
pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii 22 8.9
pdb|1AQM| Alpha-Amylase From Alteromonas Haloplanctis Com... 22 8.9
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4-Piperidino-Piperidine
Length = 534
Score = 25.8 bits (55), Expect = 0.81
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 16 IDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKT------L 69
I+ +TTT +++H L K E+ + T K + L L PK + F T L
Sbjct: 247 IEAGCKTTTSAVMVHCLRQKTEEELMEVTLKMKFM--ALDLVGDPKENTAFLTTVIDGVL 304
Query: 70 LEAAEKENISQKK 82
L A E +++KK
Sbjct: 305 LPKAPAEILAEKK 317
>pdb|1AYE| Human Procarboxypeptidase A2
Length = 401
Score = 24.3 bits (51), Expect = 2.4
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 52 GELKLEVAPKNQSFFKTLLEAAEKENISQKKMQTP 86
G+ LE+ P N+ K LL+ +E++ ++P
Sbjct: 6 GDQVLEIVPSNEEQIKNLLQLEAQEHLQLDFWKSP 40
>pdb|1TII|C Chain C, Escherichia Coli Heat Labile Enterotoxin Type Iib
Length = 53
Score = 23.9 bits (50), Expect = 3.1
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 32 LANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFF 66
L NK ++ D + +KY+ +K L ++ N FF
Sbjct: 10 LTNKLSQHDLADFKKYIKRKFTLMTLLSINNDGFF 44
>pdb|1PFO| Perfringolysin O
Length = 500
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 23 TTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLE 57
T++F+ + +A N+ D ET Y KG++ L+
Sbjct: 363 TSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLD 397
>pdb|1CEI| Structure Determination Of The Colicin E7 Immunity Protein
(Imme7) That Binds Specifically To The Dnase-Type
Colicin E7 And Inhibits Its Bacteriocidal Activity
Length = 94
Score = 22.7 bits (47), Expect = 6.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 53 ELKLEVAPKNQSFFKTLLEAAEKENIS 79
ELK ++ ++ F LL+ EKEN++
Sbjct: 2 ELKNSISDYTEAEFVQLLKEIEKENVA 28
>pdb|1UNK|A Chain A, Structure Of Colicin E7 Immunity Protein
pdb|1UNK|B Chain B, Structure Of Colicin E7 Immunity Protein
pdb|1UNK|C Chain C, Structure Of Colicin E7 Immunity Protein
pdb|1UNK|D Chain D, Structure Of Colicin E7 Immunity Protein
pdb|7CEI|A Chain A, The Endonuclease Domain Of Colicin E7 In Complex With
Its Inhibitor Im7 Protein
pdb|1AYI| Colicin E7 Immunity Protein Im7
Length = 87
Score = 22.7 bits (47), Expect = 6.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 53 ELKLEVAPKNQSFFKTLLEAAEKENIS 79
ELK ++ ++ F LL+ EKEN++
Sbjct: 2 ELKNSISDYTEAEFVQLLKEIEKENVA 28
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1 - 317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1 - 317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1 - 317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1 - 317
Length = 317
Score = 22.7 bits (47), Expect = 6.9
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 16/61 (26%)
Query: 32 LANKQNEKDKQETRKYL---YQKGELK---LEVAPKNQSFFKTLLEAAEKENISQKKMQT 85
L +Q+ +D E+ Y+ + G L L+ A K Q + E IS+KKM T
Sbjct: 186 LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKY----------ERISEKKMST 235
Query: 86 P 86
P
Sbjct: 236 P 236
>pdb|1FVZ|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine
Length = 271
Score = 22.3 bits (46), Expect = 8.9
Identities = 13/48 (27%), Positives = 24/48 (49%)
Query: 11 KLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEV 58
+LY + + + T + VL N+ EKD E +Y ++ L+ +V
Sbjct: 22 QLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKV 69
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 22.3 bits (46), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 42 QETRKYLYQKGELKLEVAPKNQ 63
QE +YL KG ++V+P N+
Sbjct: 18 QECEQYLGPKGYAAVQVSPPNE 39
>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound
Phospholipid At 2.0 Angstroms Resolution
Length = 270
Score = 22.3 bits (46), Expect = 8.9
Identities = 13/48 (27%), Positives = 24/48 (49%)
Query: 11 KLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEV 58
+LY + + + T + VL N+ EKD E +Y ++ L+ +V
Sbjct: 21 QLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKV 68
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 22.3 bits (46), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 42 QETRKYLYQKGELKLEVAPKNQ 63
QE +YL KG ++V+P N+
Sbjct: 18 QECEQYLGPKGYAAVQVSPPNE 39
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 22.3 bits (46), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 42 QETRKYLYQKGELKLEVAPKNQ 63
QE +YL KG ++V+P N+
Sbjct: 18 QECEQYLGPKGYAAVQVSPPNE 39
>pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase,
Comii (Pseudo Tri-Saccharide From Bayer) And Tris
(2-Amino-2- Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex
Between Psychrophilic Alpha Amylase From
Pseudoalteromonas Haloplanctis In Complex With A
Hepta-Saccharide And A Tris Molecule
Length = 448
Score = 22.3 bits (46), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 42 QETRKYLYQKGELKLEVAPKNQ 63
QE +YL KG ++V+P N+
Sbjct: 18 QECEQYLGPKGYAAVQVSPPNE 39
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 22.3 bits (46), Expect = 8.9
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 17 DGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAAE 74
D T LL K+ EKDK + + ++ EL+ AP+ ++ LE A+
Sbjct: 82 DKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAK 139
>pdb|1AQM| Alpha-Amylase From Alteromonas Haloplanctis Complexed With Tris
pdb|1AQH| Alpha-Amylase From Alteromonas Haloplanctis
pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
Length = 453
Score = 22.3 bits (46), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 42 QETRKYLYQKGELKLEVAPKNQ 63
QE +YL KG ++V+P N+
Sbjct: 18 QECEQYLGPKGYAAVQVSPPNE 39
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.130 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,604
Number of Sequences: 13198
Number of extensions: 14494
Number of successful extensions: 31
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 15
length of query: 95
length of database: 2,899,336
effective HSP length: 71
effective length of query: 24
effective length of database: 1,962,278
effective search space: 47094672
effective search space used: 47094672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)