BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644817|ref|NP_206987.1| hypothetical protein
[Helicobacter pylori 26695]
         (33 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FPN|1  Chain 1, Human Rhinovirus Serotype 2 (Hrv2)            24  4.4

>pdb|1FPN|1 Chain 1, Human Rhinovirus Serotype 2 (Hrv2)
          Length = 289

 Score = 23.9 bits (50), Expect = 4.4
 Identities = 8/23 (34%), Positives = 15/23 (64%)

Query: 4   TIKEIFQAEGYSIPNYQRDYAWK 26
           T++ ++   G  +PN + DYAW+
Sbjct: 140 TMQYMYVPPGAPVPNSRDDYAWQ 162



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,437
Number of Sequences: 13198
Number of extensions: 3859
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 1
length of query: 33
length of database: 2,899,336
effective HSP length: 9
effective length of query: 24
effective length of database: 2,780,554
effective search space: 66733296
effective search space used: 66733296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)