BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644818|ref|NP_206988.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(177 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal... 25 3.9
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex Wi... 25 6.6
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgf... 25 6.6
pdb|1JNP|A Chain A, Crystal Structure Of Murine Tcl1 At 2.5... 24 8.6
>pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 25.4 bits (54), Expect = 3.9
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 16 LLAPLCIAMSLVLVVLGYVFMKELWHMLSHLNTIS-ETDLVLSALGLVDLLFM 67
L+ L IA S +L L +KEL LSHL+ I+ + V+ + +V + F+
Sbjct: 17 LMGELVIARSRILETLKKYNIKELDESLSHLSRITLDLQNVVMKIRMVPISFV 69
>pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 24.6 bits (52), Expect = 6.6
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 74 VLLASYESFVSKLDKVDASEITWLKHTDFNALKL 107
V L S F+ K+ I WLKH + N K+
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI 160
>pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
Length = 225
Score = 24.6 bits (52), Expect = 6.6
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 74 VLLASYESFVSKLDKVDASEITWLKHTDFNALKL 107
V L S F+ K+ I WLKH + N K+
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI 160
>pdb|1JNP|A Chain A, Crystal Structure Of Murine Tcl1 At 2.5 Resolution
pdb|1JNP|B Chain B, Crystal Structure Of Murine Tcl1 At 2.5 Resolution
Length = 116
Score = 24.3 bits (51), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 136 PKDTPLSHNPIFWQVVIHLVF 156
PKD S + ++WQ++ H+ F
Sbjct: 78 PKDRYRSADSMYWQILYHIKF 98
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.328 0.138 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 846,250
Number of Sequences: 13198
Number of extensions: 26751
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 2,899,336
effective HSP length: 82
effective length of query: 95
effective length of database: 1,817,100
effective search space: 172624500
effective search space used: 172624500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)