BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644821|ref|NP_206991.1| fumarate reductase,
flavoprotein subunit (frdA) [Helicobacter pylori 26695]
(714 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinell... 967 0.0
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinell... 967 0.0
pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Re... 966 0.0
pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With ... 310 3e-85
pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Impli... 187 3e-48
pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant >gi|2... 184 2e-47
pdb|1QO8|A Chain A, The Structure Of The Open Conformation ... 124 4e-29
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 112 1e-25
pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant F... 112 2e-25
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 111 2e-25
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frig... 110 7e-25
pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant F... 108 2e-24
pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant F... 108 2e-24
pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant F... 107 4e-24
pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant F... 107 5e-24
pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavo... 107 6e-24
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frig... 106 1e-23
pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT ... 104 3e-23
pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase ... 38 0.004
pdb|1GOS|A Chain A, Human Monoamine Oxidase B >gi|17942912|... 34 0.064
pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhy... 30 1.2
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 29 2.1
pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Fer... 29 2.1
pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-R... 29 2.1
pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus ... 29 2.1
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 29 2.1
pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoen... 29 2.1
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 28 3.5
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cu... 28 3.5
pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Co... 28 3.5
pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermoto... 28 4.6
pdb|1F2H|A Chain A, Solution Structure Of The N-Terminal Do... 27 6.0
pdb|1F3V|A Chain A, Crystal Structure Of The Complex Betwee... 27 6.0
pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Bind... 27 7.9
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 27 7.9
pdb|1QJ2|B Chain B, Co Dehydrogenase From Oligotropha Carbo... 27 7.9
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 27 7.9
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 967 bits (2500), Expect = 0.0
Identities = 463/683 (67%), Positives = 552/683 (80%), Gaps = 27/683 (3%)
Query: 1 MKITYCDALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKK 60
MK+ YCD+L+IGGGLAGLRA++A +QKGL+TIVLSL+PV+RSHSAAAQGGMQASL N+K
Sbjct: 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM 60
Query: 61 SEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVN 120
S+GDNEDLHF+DTVKGSDWGCDQ+VARMFV TAPKAIRELA+WGVPWTRI KGDR A++N
Sbjct: 61 SDGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIIN 120
Query: 121 GEHVTITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKD 180
+ TITE D RHG I SRDFGGTKKWRTC+TADATGHTML+AVANE L V IQDRK+
Sbjct: 121 AQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKE 180
Query: 181 MLAFIHHDNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGAASA 240
+A IH D KCYGAVVRDL+TG+I AYV+KGTL+ATGGYGR+YK+TTNAV+C+G G A A
Sbjct: 181 AIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA 240
Query: 241 LETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMPAYEPEKKELAS 300
LETG+A+LGNMEAVQFHPT L PSGIL+TEGCRGDGG+LRD G RFMP YEPEKKELAS
Sbjct: 241 LETGIAQLGNMEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELAS 300
Query: 301 RDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIAMTFAGIDPADS 360
RDVVSRR++EHI+KG G +SPYG H+WLDI+ILGR H+E NLRDV++I FAGIDPA+
Sbjct: 301 RDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEK 360
Query: 361 KEQTKDNMQGVPANEPEYGQAMAKQKGWIPIKPMQHYSMGGVRTNPKGETHLKGLFCAGE 420
W P+ PMQHYSMGG+RT+ +GE LKGLF AGE
Sbjct: 361 ---------------------------WAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGE 393
Query: 421 AACWDLHGFNRLGGNSVSEAVVAGMIIGDYFASHCLEAQIEINTQKVEAFIKESQDYMHF 480
AACWD+HGFNRLGGNSVSEAVVAGMI+G+YFA HC Q+++ T+ +E F+K + YM
Sbjct: 394 AACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKS 453
Query: 481 LLHNEGKEDVYEIRERMKEVMDEKVGVFREGKRLEEALKELQELYARSKNICVKNKVLHN 540
L+ ++G EDV++I+ RMK+VMD+ VG+FR+G LE+A+KEL+ELY +SKN+ +KNK LH
Sbjct: 454 LVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHA 513
Query: 541 NPELEDAYRTKKMLKLALCITQGALLRTESRGAHTRIDYPKRDDEKWLNRTLASWPSAEQ 600
NPELE+AYR MLK+ALC+ +GAL RTESRGAH R DYPKRDD WLNRTLASWP+ EQ
Sbjct: 514 NPELEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQ 573
Query: 601 DMPTIEYEELDVMKMEISPDFRGYGKKGNFIPHPKKEERDAEILKTILELEKLGKDRIEV 660
+PT+EYE LDV +MEI+P +RGYG KGN+I +P +R EI K ELE GKDR +
Sbjct: 574 TLPTLEYEALDVNEMEIAPGYRGYGAKGNYIENPLSVKRQEEIDKIQSELEAAGKDRHAI 633
Query: 661 QHALMPFELQEKYKARNMRLEDE 683
Q ALMP+EL KYKARN RL D+
Sbjct: 634 QEALMPYELPAKYKARNERLGDK 656
>pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 655
Score = 967 bits (2499), Expect = 0.0
Identities = 463/682 (67%), Positives = 551/682 (79%), Gaps = 27/682 (3%)
Query: 1 MKITYCDALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKK 60
MK+ YCD+L+IGGGLAGLRA++A +QKGL+TIVLSL+PV+RSHSAAAQGGMQASL N+K
Sbjct: 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM 60
Query: 61 SEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVN 120
S+GDNEDLHF+DTVKGSDWGCDQ+VARMFV TAPKAIRELA+WGVPWTRI KGDR A++N
Sbjct: 61 SDGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIIN 120
Query: 121 GEHVTITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKD 180
+ TITE D RHG I SRDFGGTKKWRTC+TADATGHTML+AVANE L V IQDRK+
Sbjct: 121 AQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKE 180
Query: 181 MLAFIHHDNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGAASA 240
+A IH D KCYGAVVRDL+TG+I AYV+KGTL+ATGGYGR+YK+TTNAV+C+G G A A
Sbjct: 181 AIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA 240
Query: 241 LETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMPAYEPEKKELAS 300
LETG+A+LGNMEAVQFHPT L PSGIL+TEGCRGDGG+LRD G RFMP YEPEKKELAS
Sbjct: 241 LETGIAQLGNMEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELAS 300
Query: 301 RDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIAMTFAGIDPADS 360
RDVVSRR++EHI+KG G +SPYG H+WLDI+ILGR H+E NLRDV++I FAGIDPA+
Sbjct: 301 RDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEK 360
Query: 361 KEQTKDNMQGVPANEPEYGQAMAKQKGWIPIKPMQHYSMGGVRTNPKGETHLKGLFCAGE 420
W P+ PMQHYSMGG+RT+ +GE LKGLF AGE
Sbjct: 361 ---------------------------WAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGE 393
Query: 421 AACWDLHGFNRLGGNSVSEAVVAGMIIGDYFASHCLEAQIEINTQKVEAFIKESQDYMHF 480
AACWD+HGFNRLGGNSVSEAVVAGMI+G+YFA HC Q+++ T+ +E F+K + YM
Sbjct: 394 AACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKS 453
Query: 481 LLHNEGKEDVYEIRERMKEVMDEKVGVFREGKRLEEALKELQELYARSKNICVKNKVLHN 540
L+ ++G EDV++I+ RMK+VMD+ VG+FR+G LE+A+KEL+ELY +SKN+ +KNK LH
Sbjct: 454 LVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHA 513
Query: 541 NPELEDAYRTKKMLKLALCITQGALLRTESRGAHTRIDYPKRDDEKWLNRTLASWPSAEQ 600
NPELE+AYR MLK+ALC+ +GAL RTESRGAH R DYPKRDD WLNRTLASWP+ EQ
Sbjct: 514 NPELEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQ 573
Query: 601 DMPTIEYEELDVMKMEISPDFRGYGKKGNFIPHPKKEERDAEILKTILELEKLGKDRIEV 660
+PT+EYE LDV +MEI+P +RGYG KGN+I +P +R EI K ELE GKDR +
Sbjct: 574 TLPTLEYEALDVNEMEIAPGYRGYGAKGNYIENPLSVKRQEEIDKIQSELEAAGKDRHAI 633
Query: 661 QHALMPFELQEKYKARNMRLED 682
Q ALMP+EL KYKARN RL D
Sbjct: 634 QEALMPYELPAKYKARNERLGD 655
>pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLA|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 966 bits (2496), Expect = 0.0
Identities = 462/683 (67%), Positives = 552/683 (80%), Gaps = 27/683 (3%)
Query: 1 MKITYCDALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKK 60
MK+ YCD+L+IGGGLAGLRA++A +QKGL+TIVLSL+PV+RSHSAAAQGGMQASL N+K
Sbjct: 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM 60
Query: 61 SEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVN 120
S+GDNEDLHF+DTVKGSDWGCDQ+VARMFV TAPKAIRELA+WGVPWTRI KGDR A++N
Sbjct: 61 SDGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIIN 120
Query: 121 GEHVTITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKD 180
+ TITE D RHG I SRDFGGTKKWRTC+TADATGHTML+AVANE L V IQDRK+
Sbjct: 121 AQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKE 180
Query: 181 MLAFIHHDNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGAASA 240
+A IH D KCYGAVVRDL+TG+I AYV+KGTL+ATGGYGR+YK+TTNAV+C+G G A A
Sbjct: 181 AIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA 240
Query: 241 LETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMPAYEPEKKELAS 300
LETG+A+LGNMEAVQFHPT L PSGIL+TEGCRGDGG+LRD G RFMP YEPEKKELAS
Sbjct: 241 LETGIAQLGNMEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELAS 300
Query: 301 RDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIAMTFAGIDPADS 360
RDVVSRR++EHI+KG G +SPYG H+WLDI+ILGR H+E NLRDV++I FAGIDPA+
Sbjct: 301 RDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEK 360
Query: 361 KEQTKDNMQGVPANEPEYGQAMAKQKGWIPIKPMQHYSMGGVRTNPKGETHLKGLFCAGE 420
W P+ PMQHYSMGG+RT+ +GE LKGLF AGE
Sbjct: 361 ---------------------------WAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGE 393
Query: 421 AACWDLHGFNRLGGNSVSEAVVAGMIIGDYFASHCLEAQIEINTQKVEAFIKESQDYMHF 480
AACWD+HGFNRLGGNSVSEAVVAGMI+G+YFA HC Q+++ T+ +E F+K + YM
Sbjct: 394 AACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKS 453
Query: 481 LLHNEGKEDVYEIRERMKEVMDEKVGVFREGKRLEEALKELQELYARSKNICVKNKVLHN 540
L+ ++G EDV++I+ RMK+VMD+ VG+FR+G LE+++KEL+ELY +SKN+ +KNK LH
Sbjct: 454 LVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKSVKELEELYKKSKNVGIKNKRLHA 513
Query: 541 NPELEDAYRTKKMLKLALCITQGALLRTESRGAHTRIDYPKRDDEKWLNRTLASWPSAEQ 600
NPELE+AYR MLK+ALC+ +GAL RTESRGAH R DYPKRDD WLNRTLASWP+ EQ
Sbjct: 514 NPELEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQ 573
Query: 601 DMPTIEYEELDVMKMEISPDFRGYGKKGNFIPHPKKEERDAEILKTILELEKLGKDRIEV 660
+PT+EYE LDV +MEI+P +RGYG KGN+I +P +R EI K ELE GKDR +
Sbjct: 574 TLPTLEYEALDVNEMEIAPRYRGYGAKGNYIENPLSVKRQEEIDKIQSELEAAGKDRHAI 633
Query: 661 QHALMPFELQEKYKARNMRLEDE 683
Q ALMP+EL KYKARN RL D+
Sbjct: 634 QEALMPYELPAKYKARNERLGDK 656
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|A Chain A, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|M Chain M, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 602
Score = 310 bits (795), Expect = 3e-85
Identities = 224/647 (34%), Positives = 318/647 (48%), Gaps = 87/647 (13%)
Query: 1 MKITYCDALIIGGGLAGLRASIACKQKGLNTIV--LSLVPVRRSHSAAAQGGMQASLANA 58
M+ D I+G G AGLRA+IA Q N + +S V RSH+ AA+GG + A
Sbjct: 1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGG-----SAA 55
Query: 59 KKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAV 118
+ D+ + HF DTV G DW C+Q V FV P + +L WG PW+R RP
Sbjct: 56 VAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSR-----RP-- 108
Query: 119 VNGEHVTITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHH-KVDIQD 177
G + R FGG K RT F AD TG ML+ + +L ++ D
Sbjct: 109 --------------DGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFD 154
Query: 178 RKDMLAFIHHDNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGA 237
+L + D G V +++ G + + ++ATGG GRVY++ TN I G G
Sbjct: 155 EHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGM 214
Query: 238 ASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMPAY------ 291
AL GV L +ME VQ+HPT L SGILMTEGCRG+GG+L +K G R++ Y
Sbjct: 215 GMALSHGVP-LRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPET 273
Query: 292 ---EPEKK--ELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVR 346
EP+ K EL RD VS+ +KG +P GD V+LD+ LG + + L +
Sbjct: 274 PLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFIC 333
Query: 347 DIAMTFAGIDPADSKEQTKDNMQGVPANEPEYGQAMAKQKGWIPIKPMQHYSMGGVRTNP 406
++A + G+DP EP IP++P HY+MGG+ T+
Sbjct: 334 ELAKAYVGVDPV---------------KEP------------IPVRPTAHYTMGGIETDQ 366
Query: 407 KGETHLKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDY------FASHCLEAQI 460
ET +KGLF GE + LHG NRLG NS++E VV G + G+ A + EA I
Sbjct: 367 NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAI 426
Query: 461 EINTQKVEAFIKESQDYMHFLLHNEGKEDVYEIRERMKEVMDEKVGVFREGKRLEEALKE 520
E VE +K+ L++ +G E+ +IR+ M M+E G++R + +++ + +
Sbjct: 427 EAQAAGVEQRLKD-------LVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDK 479
Query: 521 LQELYARSKNICVKNKVLHNNPELEDAYRTKKMLKLALCITQGALLRTESRGAHTRID-- 578
L EL R K + + + N +L L +A C+ A+ R ESRGAH R+D
Sbjct: 480 LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEG 539
Query: 579 YPKRDDEKWLNRTLASWPSAEQDMPTIEYEELDVMKMEISPDFRGYG 625
+RDD +L TLA + A+ T E DV + P R YG
Sbjct: 540 CTERDDVNFLKHTLA-FRDAD---GTTRLEYSDVKITTLPPAKRVYG 582
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 187 bits (475), Expect = 3e-48
Identities = 173/587 (29%), Positives = 259/587 (43%), Gaps = 85/587 (14%)
Query: 6 CDALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDN 65
CD LIIG G AGL ++ + IVLS PV + AQGG+ A E D+
Sbjct: 9 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVF-----DETDS 62
Query: 66 EDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVT 125
D H DT+ CD+ + A ++ L GV + D NGE
Sbjct: 63 IDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLF------DTHIQPNGEE-- 114
Query: 126 ITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHH-KVDIQDRKDMLAF 184
Y L+R+ GG R ADATG + + ++AL+H + + +R + +
Sbjct: 115 --------SYHLTRE-GGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDL 165
Query: 185 IHHDN-------KCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGA 237
I D + GA V + + +K +LATGG +VY++TTN I G G
Sbjct: 166 IVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGI 225
Query: 238 ASALETGVAKLGNMEAVQFHPTALV---PSGILMTEGCRGDGGVLRDKFGRRFMPAYEPE 294
A A G ++ N+E QFHPTAL L+TE RG+G L+ G RFMP ++ E
Sbjct: 226 AMAWRAG-CRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFD-E 283
Query: 295 KKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIAMTFAG 354
+ ELA RD+V+R I +H K GA D ++LDI+ + + ++ + + + G
Sbjct: 284 RGELAPRDIVARAI-DHEMKRLGA-----DCMFLDISHKPADFIRQHFPMIYE-KLLGLG 336
Query: 355 IDPADSKEQTKDNMQGVPANEPEYGQAMAKQKGWIPIKPMQHYSMGGVRTNPKGETHLKG 414
ID EP +PI P HY+ GGV + G T ++G
Sbjct: 337 ID---------------LTQEP------------VPIVPAAHYTCGGVMVDDHGRTDVEG 369
Query: 415 LFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFASHCLEAQIEINTQKVEAFIKES 474
L+ GE + LHG NR+ NS+ E +V G + A + E+
Sbjct: 370 LYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLPPWDESRVEN 429
Query: 475 QDYMHFLLHNEGKEDVYEIRERMKEVMDEKVGVFREGKRLEEALKELQELYARSKNICVK 534
D + HN ++ M + VG+ R KRLE AL+ + L
Sbjct: 430 PDERVVIQHN---------WHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAH 480
Query: 535 NKVLHNNPELEDAYRTKKMLKLALCITQGALLRTESRGAHTRIDYPK 581
+V +N EL + ++++A I + A++R ESRG H +DYP+
Sbjct: 481 FRVSNNLLEL------RNLVQVAELIVRCAMMRKESRGLHFTLDYPE 521
>pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant
pdb|1KNP|A Chain A, E. Coli L-Aspartate Oxidase: Mutant R386l In Complex With
Succinate
Length = 540
Score = 184 bits (468), Expect = 2e-47
Identities = 172/587 (29%), Positives = 258/587 (43%), Gaps = 85/587 (14%)
Query: 6 CDALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDN 65
CD LIIG G AGL ++ + IVLS PV + AQGG+ A E D+
Sbjct: 9 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVF-----DETDS 62
Query: 66 EDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVT 125
D H DT+ CD+ + A ++ L GV + D NGE
Sbjct: 63 IDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLF------DTHIQPNGEE-- 114
Query: 126 ITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHH-KVDIQDRKDMLAF 184
Y L+R+ GG R ADATG + + ++AL+H + + +R + +
Sbjct: 115 --------SYHLTRE-GGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDL 165
Query: 185 IHHDN-------KCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGA 237
I D + GA V + + +K +LATGG +VY++TTN I G G
Sbjct: 166 IVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGI 225
Query: 238 ASALETGVAKLGNMEAVQFHPTALV---PSGILMTEGCRGDGGVLRDKFGRRFMPAYEPE 294
A A G ++ N+E QFHPTAL L+TE RG+G L+ G RFMP ++ E
Sbjct: 226 AMAWRAG-CRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFD-E 283
Query: 295 KKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIAMTFAG 354
+ ELA RD+V+R I +H K GA D ++LDI+ + + ++ + + + G
Sbjct: 284 RGELAPRDIVARAI-DHEMKRLGA-----DCMFLDISHKPADFIRQHFPMIYE-KLLGLG 336
Query: 355 IDPADSKEQTKDNMQGVPANEPEYGQAMAKQKGWIPIKPMQHYSMGGVRTNPKGETHLKG 414
ID EP +PI P HY+ GGV + G T ++G
Sbjct: 337 ID---------------LTQEP------------VPIVPAAHYTCGGVMVDDHGRTDVEG 369
Query: 415 LFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFASHCLEAQIEINTQKVEAFIKES 474
L+ GE + LHG N + NS+ E +V G + A + E+
Sbjct: 370 LYAIGEVSYTGLHGANLMASNSLLECLVYGWSAAEDITRRMPYAHDISTLPPWDESRVEN 429
Query: 475 QDYMHFLLHNEGKEDVYEIRERMKEVMDEKVGVFREGKRLEEALKELQELYARSKNICVK 534
D + HN ++ M + VG+ R KRLE AL+ + L
Sbjct: 430 PDERVVIQHN---------WHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAH 480
Query: 535 NKVLHNNPELEDAYRTKKMLKLALCITQGALLRTESRGAHTRIDYPK 581
+V +N EL + ++++A I + A++R ESRG H +DYP+
Sbjct: 481 FRVSNNLLEL------RNLVQVAELIVRCAMMRKESRGLHFTLDYPE 521
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 124 bits (311), Expect = 4e-29
Identities = 129/479 (26%), Positives = 209/479 (42%), Gaps = 68/479 (14%)
Query: 9 LIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDL 68
L++G G AG AS+A K+ G N I++ P +S + GGM A + + G + +
Sbjct: 125 LVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKV 184
Query: 69 HFL--DTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVTI 126
+ D +KG D ++ + + ++ L S G +K+ G V
Sbjct: 185 EWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRS------GGARVDR 238
Query: 127 TERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQ-DRKDMLAFI 185
T R HG ++G ++ + A +D + + + + +
Sbjct: 239 THRP--HG------------------GKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVV 278
Query: 186 HHDNKCYGAVVRDLITGEISAYVSKGTLLATGGYGR------VYKHT------TNAVICD 233
+ D+ GAVV TG +K +LATGGYG Y+ T +N +
Sbjct: 279 NDDHSVVGAVVHGKHTGYYMIG-AKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITAT 337
Query: 234 GAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMPAYEP 293
G G A E G A + +++ VQ HPT S IL++E RG G V+ +K G RF+
Sbjct: 338 GDGVLMAKEIG-ASMTDIDWVQAHPTVGKDSRILISETVRGVGAVMVNKDGNRFI----- 391
Query: 294 EKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAIL-GRNHVEKNLR-DVRDIAMT 351
EL +RD S IL+ Q G A + + ++ ++ G +H+E + D +
Sbjct: 392 --SELTTRDKASDAILK--QPGQFAWIIFDNQLYKKAKMVRGYDHLEMLYKGDTVEQLAK 447
Query: 352 FAGIDPADSKEQTKD-NMQGVPANEPEYGQA-----MAKQKGW-IPIKPMQHYSMGGVRT 404
G+ AD + D N + +G+A M + + + + P H++MGGV
Sbjct: 448 STGMKVADLAKTVSDYNGYVASGKDTAFGRADMPLNMTQSPYYAVKVAPGIHHTMGGVAI 507
Query: 405 NPKGET------HLKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFASHCLE 457
N + GLF AGE +HG+NRLGGN++++ VV G I GD A H L+
Sbjct: 508 NTTASVLDLQSKPIDGLFAAGEVT-GGVHGYNRLGGNAIADTVVFGRIAGDNAAKHALD 565
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 112 bits (281), Expect = 1e-25
Identities = 127/478 (26%), Positives = 203/478 (41%), Gaps = 79/478 (16%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQA--SLANAKKSEGD 64
D +IIG G AGL A+++ + G I+L P+ ++ A GGM A + AK D
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ + DT+KG D ++ ++ + +I L S G T + + A VN H
Sbjct: 188 KKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMG-GASVNRSH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G + + + A+ DI+ ++
Sbjct: 246 --------------RPTGGA----------GVGAHVAQVLWDNAVKRGTDIRLNSRVVRI 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYG----RVYKH--------TTNA 229
+ + G V L+ GE + Y + ++A GG+ RV K+ TN
Sbjct: 282 LEDAS---GKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNH 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G AL+ G A ++E +Q HPT G+++TE RG+G ++ ++ G RFM
Sbjct: 339 PGATGDGLDVALQAGAA-TRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFM- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDI-AILGRNH--VEKNLRDVR 346
E+ +RD S IL+ QKG A + D + + AI G H + K + +
Sbjct: 397 ------NEITTRDKASAAILQ--QKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIE 448
Query: 347 DIAMTFAGID-PADSKEQTKDNMQG-------VPANEPEYGQAMAKQKGW-IPIKPMQHY 397
++A ID PA +T G P+ + + + + I P H+
Sbjct: 449 ELAKQ---IDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHH 505
Query: 398 SMGGVRTNPKGETH-------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIG 448
+MGG+ + K E + GL+ AGE +HG NRLGGN++S+ V G I G
Sbjct: 506 TMGGLVIDTKAEVKSEKTGKPITGLYAAGEVT-GGVHGANRLGGNAISDIVTYGRIAG 562
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 112 bits (279), Expect = 2e-25
Identities = 116/481 (24%), Positives = 205/481 (42%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ +Q HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ +RD S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTRDKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P HY+M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHYTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 111 bits (278), Expect = 2e-25
Identities = 126/478 (26%), Positives = 203/478 (42%), Gaps = 79/478 (16%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQA--SLANAKKSEGD 64
D +IIG G AGL A+++ + G I+L P+ ++ A GGM A + AK D
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ + DT+KG D ++ ++ + +I L S G T + + A VN H
Sbjct: 188 KKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMG-GASVNRSH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G + + + A+ DI+ ++
Sbjct: 246 --------------RPTGGA----------GVGAHVAQVLWDNAVKRGTDIRLNSRVVRI 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYG----RVYKH--------TTNA 229
+ + G V L+ GE + Y + ++A GG+ RV K+ TN
Sbjct: 282 LEDAS---GKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNH 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G AL+ G A +++ +Q HPT G+++TE RG+G ++ ++ G RFM
Sbjct: 339 PGATGDGLDVALQAGAA-TRDLQYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFM- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDI-AILGRNH--VEKNLRDVR 346
E+ +RD S IL+ QKG A + D + + AI G H + K + +
Sbjct: 397 ------NEITTRDKASAAILQ--QKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIE 448
Query: 347 DIAMTFAGID-PADSKEQTKDNMQG-------VPANEPEYGQAMAKQKGW-IPIKPMQHY 397
++A ID PA +T G P+ + + + + I P H+
Sbjct: 449 ELAKQ---IDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHH 505
Query: 398 SMGGVRTNPKGETH-------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIG 448
+MGG+ + K E + GL+ AGE +HG NRLGGN++S+ V G I G
Sbjct: 506 TMGGLVIDTKAEVKSEKTAKPITGLYAAGEVT-GGVHGANRLGGNAISDIVTYGRIAG 562
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 110 bits (274), Expect = 7e-25
Identities = 115/481 (23%), Positives = 205/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ +Q HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ +RD S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTRDKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H++M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 108 bits (271), Expect = 2e-24
Identities = 114/481 (23%), Positives = 205/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ +Q HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ ++D S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTKDKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H++M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 108 bits (270), Expect = 2e-24
Identities = 115/481 (23%), Positives = 204/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ +Q HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ +RD S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTRDKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H +M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHATM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 107 bits (268), Expect = 4e-24
Identities = 114/481 (23%), Positives = 204/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ +Q HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ + D S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTADKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H++M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 107 bits (267), Expect = 5e-24
Identities = 114/481 (23%), Positives = 204/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ +Q HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ + D S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTYDKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H++M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 107 bits (266), Expect = 6e-24
Identities = 114/481 (23%), Positives = 204/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ + HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIFAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ +RD S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTRDKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H++M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 106 bits (264), Expect = 1e-23
Identities = 114/481 (23%), Positives = 204/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ +Q PT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIQAAPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ +RD S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTRDKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H++M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 104 bits (260), Expect = 3e-23
Identities = 113/481 (23%), Positives = 203/481 (41%), Gaps = 74/481 (15%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEG--D 64
D +++G G AG A+I+ G I++ PV ++ A GGM A+ + +K++ D
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITD 187
Query: 65 NEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHV 124
+ +L F DT+KG D + ++ + + ++ + + G T + A VN H
Sbjct: 188 SPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG-ASVNRAH- 245
Query: 125 TITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAF 184
R GG G ++ + + A+ +D++ +
Sbjct: 246 --------------RPTGGA----------GVGAHVVQVLYDNAVKRNIDLRMNTRGIEV 281
Query: 185 IHHDNKCYGAVVRDLITGEISAYV---SKGTLLATGGYGRVYKH------------TTNA 229
+ D G V L+ G Y + +LATGG+ + + +TN
Sbjct: 282 LKDDK---GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQ 338
Query: 230 VICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGILMTEGCRGDGGVLRDKFGRRFMP 289
G G A G A L +M+ + HPT V G+++TE RG+G +L ++ G+RF+
Sbjct: 339 PGAVGDGLDVAENAGGA-LKDMQYIFAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFV- 396
Query: 290 AYEPEKKELASRDVVSRRILEHIQKGYGAKSPYGDHVWLDIAILGRNHVEKNLRDVRDIA 349
E+ + D S IL Q G A + D V ++ + + ++ + D
Sbjct: 397 ------NEITTADKASAAIL--AQTGKSAYLIFDDSVRKSLSKIDK-YIGLGVAPTADSL 447
Query: 350 MTFAGIDPADSKEQTK---------DNMQGVPANEPEYGQAMAKQKGW-IPIKPMQHYSM 399
+ ++ D K T+ + + P +A+ + + I + P H++M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 400 GGVRTNPKGETH------LKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFAS 453
GGV + K E + GL+ AGE +HG NRLGGN++S+ + G + G+ A
Sbjct: 508 GGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAK 566
Query: 454 H 454
+
Sbjct: 567 Y 567
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 37.7 bits (86), Expect = 0.004
Identities = 65/287 (22%), Positives = 115/287 (39%), Gaps = 30/287 (10%)
Query: 339 EKNLRDVRDIAMTFAGIDPADSKEQTKDNMQGVPANEPEYGQAMAKQKGWI----PIKPM 394
E+ D D+ ++ A + + + + + PA G + W+ + P
Sbjct: 356 EEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPE 415
Query: 395 QHYSMGGVRTNPKGETHLKGLFCAGEAACWDLHGFNRLGGNSVSEAVVAGMIIGDYFASH 454
++ + ++ N T +KGLF G+ A + H F+ S +E +A +
Sbjct: 416 EYAKLFPLKYNRM--TTVKGLFAIGDCAGANPHKFS---SGSFTEGRIAAKAAVRFILEQ 470
Query: 455 CLEAQIEINTQKVEAFIKESQDYMHFLLHNEGKEDVYEIRE----------RMKEVMDE- 503
+ EI+ VE K++ M + + ++ R++++MDE
Sbjct: 471 --KPNPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEY 528
Query: 504 KVGVFREGKRLEEALKELQELYARSKNICVK--NKVLHNNPELEDAYRTKKMLKLALCIT 561
G+ K E+ L+ EL A K K + LH EL A+ + A
Sbjct: 529 AAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLH---ELMRAWELVHRVWTAEAHV 585
Query: 562 QGALLRTESR--GAHTRIDYPKRDDEKWLNRTLASWPSAEQDMPTIE 606
+ L R E+R G + R DYP+ +DE+W + S AE+D T E
Sbjct: 586 RHMLFRKETRWPGYYYRTDYPELNDEEW-KCFVCSKYDAEKDEWTFE 631
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
Length = 520
Score = 33.9 bits (76), Expect = 0.064
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 6 CDALIIGGGLAGLRASIACKQKGLNTIVL 34
CD +++GGG++G+ A+ GLN +VL
Sbjct: 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVL 33
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNT---------IVLSLVPVRRSHSAAAQGGMQASLAN 57
D LI+G G AG A+I +KG+ T +L V + S G + LA
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQK--LAG 60
Query: 58 AKKSEGDNEDLHFLDTVKGS 77
A K D D+ +D+ S
Sbjct: 61 ALKVHVDEYDVDVIDSQSAS 80
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 28.9 bits (63), Expect = 2.1
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNT---------IVLSLVPVRRSHSAAAQGGMQASLAN 57
D LI+G G AG A++ +KG+ T VL V + S G + LA
Sbjct: 214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQK--LAG 271
Query: 58 AKKSEGDNEDLHFLDTVKGS 77
A K+ + D+ +D+ S
Sbjct: 272 ALKAHVSDYDVDVIDSQSAS 291
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
Length = 408
Score = 28.9 bits (63), Expect = 2.1
Identities = 21/69 (30%), Positives = 34/69 (48%), Gaps = 4/69 (5%)
Query: 9 LIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDL 68
LI+GGG+ GL + + G++ ++ P R S AA + +A ++G DL
Sbjct: 149 LIVGGGVIGLELAATARTAGVHVSLVETQP--RLMSRAAPATLADFVARYHAAQG--VDL 204
Query: 69 HFLDTVKGS 77
F +V GS
Sbjct: 205 RFERSVTGS 213
>pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1118
Score = 28.9 bits (63), Expect = 2.1
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 442 VAGMIIGDYFASHCLEAQIEINTQKVEAFIKESQDYMHFLLHNEGKEDVYEIRERMKEVM 501
+AG +G + S + E +++ + E+ + EG + + +R KEV+
Sbjct: 891 LAGYFLGQRYISPVFDGATE---PEIKELLAEAFNLYFGKRQGEG----FGVDKREKEVL 943
Query: 502 D--EKVGVFREGKRLEEALKELQEL 524
EK+G+ GK EE LKEL +L
Sbjct: 944 ARAEKLGLVSPGKSPEEQLKELFDL 968
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1119
Score = 28.9 bits (63), Expect = 2.1
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 442 VAGMIIGDYFASHCLEAQIEINTQKVEAFIKESQDYMHFLLHNEGKEDVYEIRERMKEVM 501
+AG +G + S + E +++ + E+ + EG + + +R KEV+
Sbjct: 892 LAGYFLGQRYISPVFDGATE---PEIKELLAEAFNLYFGKRQGEG----FGVDKREKEVL 944
Query: 502 D--EKVGVFREGKRLEEALKELQEL 524
EK+G+ GK EE LKEL +L
Sbjct: 945 ARAEKLGLVSPGKSPEEQLKELFDL 969
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 7 DALIIGGGLAGLRASIACKQKGLNT 31
D +IIGGG AG A+I Q G NT
Sbjct: 7 DVVIIGGGPAGYVAAIKAAQLGFNT 31
>pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|C Chain C, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1118
Score = 28.9 bits (63), Expect = 2.1
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 442 VAGMIIGDYFASHCLEAQIEINTQKVEAFIKESQDYMHFLLHNEGKEDVYEIRERMKEVM 501
+AG +G + S + E +++ + E+ + EG + + +R KEV+
Sbjct: 891 LAGYFLGQRYISPVFDGATE---PEIKELLAEAFNLYFGKRQGEG----FGVDKREKEVL 943
Query: 502 D--EKVGVFREGKRLEEALKELQEL 524
EK+G+ GK EE LKEL +L
Sbjct: 944 ARAEKLGLVSPGKSPEEQLKELFDL 968
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.1 bits (61), Expect = 3.5
Identities = 46/227 (20%), Positives = 91/227 (39%), Gaps = 18/227 (7%)
Query: 487 KEDVYEIRERMKEVMDEKVGVFREGKRLEEALKELQELYARSKNICVKNKVLHNNPELED 546
KE + +KE+ + + E L+E L+ ELYA ++ + V ++ ELE+
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV--RLAAKKQELEE 927
Query: 547 AYRTKKMLKLALCITQGALLRTESRGAHTRIDYPKRDDEKW-LNRTLASWPSAEQDMPTI 605
L + + E R + + K + L L +A Q + +
Sbjct: 928 ----------ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL-QL 976
Query: 606 EYEELDVMKMEISPDFRGYGKKGNFIPHPKK--EERDAEILKTILELEKLGKD--RIEVQ 661
E D ++ D + N + +K EER +++ + E E+ K+ +++ +
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 662 HALMPFELQEKYKARNMRLEDEEVRARGEHLYSFNVHELLDQHNANL 708
H M EL+ + K ++ E R S ++HE + + A +
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
>pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 28.1 bits (61), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 4 TYCDALIIGGGLAGLRAS 21
+YCD LI+G G AGL A+
Sbjct: 6 SYCDVLIVGAGPAGLMAA 23
>pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Nicotinamide-Adenine-Dinucleotide (Nad+)
Length = 458
Score = 28.1 bits (61), Expect = 3.5
Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 5/73 (6%)
Query: 9 LIIGGGLAGLRASIACKQKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDL 68
+++GGG GL IA ++ G +S+V R + A +A + K G L
Sbjct: 175 VVVGGGYIGLELGIAYRKLGAQ---VSVVEARERILPTYDSELTAPVAESLKKLG--IAL 229
Query: 69 HFLDTVKGSDWGC 81
H +V+G + GC
Sbjct: 230 HLGHSVEGYENGC 242
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 27.7 bits (60), Expect = 4.6
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 484 NEGKEDVYEIRERMKEVMDEKVGVFREGKRLEEALKELQELYARSKNI---------CVK 534
N G VY++ E ++EV D + E + + L E+ + + N+ K
Sbjct: 52 NTGNIKVYQLLEVVEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAK 111
Query: 535 NKVLHNNPELEDAYRTKKMLKLALCITQGALLRTESRGAHTRI 577
++ ELE + +K +L +T ++R A RI
Sbjct: 112 QVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRI 154
>pdb|1F2H|A Chain A, Solution Structure Of The N-Terminal Domain Of The Tnfr1
Associated Protein, Tradd
Length = 169
Score = 27.3 bits (59), Expect = 6.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 545 EDAYRTKKMLKLALCITQGAL-LRTESRGAHTRIDYPKRDDEKWLNRTLASWPSAEQDMP 603
E A R LA + Q ++ L+ E R R+D D+E+ L+ LA P +D
Sbjct: 92 EGALRAALQRSLAAALAQHSVPLQLELRAGAERLDALLADEERCLSCILAQQPDRLRDEE 151
Query: 604 TIEYEE 609
E E+
Sbjct: 152 LAELED 157
>pdb|1F3V|A Chain A, Crystal Structure Of The Complex Between The N-Terminal
Domain Of Tradd And The Traf Domain Of Traf2
Length = 179
Score = 27.3 bits (59), Expect = 6.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 545 EDAYRTKKMLKLALCITQGAL-LRTESRGAHTRIDYPKRDDEKWLNRTLASWPSAEQDMP 603
E A R LA + Q ++ L+ E R R+D D+E+ L+ LA P +D
Sbjct: 92 EGALRAALQRSLAAALAQHSVPLQLELRAGAERLDALLADEERCLSCILAQQPDRLRDEE 151
Query: 604 TIEYEE 609
E E+
Sbjct: 152 LAELED 157
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 26.9 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 632 PHPKKEERDAEILKTILELEKLGKDRIEVQHALMPF 667
PHP++E D +++KL KDR + +H L P+
Sbjct: 203 PHPQEEYLDC----LWAQIQKLKKDRWQERHILRPY 234
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 26.9 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 632 PHPKKEERDAEILKTILELEKLGKDRIEVQHALMPF 667
PHP++E D +++KL KDR + +H L P+
Sbjct: 203 PHPQEEYLDC----LWAQIQKLKKDRWQERHILRPY 234
>pdb|1QJ2|B Chain B, Co Dehydrogenase From Oligotropha Carboxidovorans
Length = 809
Score = 26.9 bits (58), Expect = 7.9
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 429 FNRLGGNSVSEAVVAGMIIGDYFASHCLEAQIE-INTQKVEA 469
F + GN V + + GM+ GD+ S A+I+ I+T K +A
Sbjct: 33 FTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKA 74
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.9 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 632 PHPKKEERDAEILKTILELEKLGKDRIEVQHALMPF 667
PHP++E D +++KL KDR + +H L P+
Sbjct: 203 PHPQEEYLDC----LWAQIQKLKKDRWQERHILRPY 234
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,367,802
Number of Sequences: 13198
Number of extensions: 193112
Number of successful extensions: 605
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 47
length of query: 714
length of database: 2,899,336
effective HSP length: 95
effective length of query: 619
effective length of database: 1,645,526
effective search space: 1018580594
effective search space used: 1018580594
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)