BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644822|ref|NP_206992.1| fumarate reductase,
cytochrome b subunit (frdC) [Helicobacter pylori 26695]
         (255 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QLA|C  Chain C, Respiratory Complex Ii-Like Fumarate Re...   289  2e-79
pdb|1E7P|C  Chain C, Quinol:fumarate Reductase From Wolinell...   288  6e-79
pdb|1E7P|I  Chain I, Quinol:fumarate Reductase From Wolinell...   288  6e-79

>pdb|1QLA|C Chain C, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1QLA|F Chain F, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1QLB|C Chain C, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1QLB|F Chain F, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
          Length = 256

 Score =  289 bits (739), Expect = 2e-79
 Identities = 141/243 (58%), Positives = 179/243 (73%), Gaps = 4/243 (1%)

Query: 1   MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYK 60
           M  E I+E Y G +   KKS + AKLD+ QSATGL L LFMI HMF VS+IL+ D  M  
Sbjct: 1   MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLW 60

Query: 61  VAKFFEGSLFLKAGEPAIVSVVAAGIILILVAHAFLALRKFPINYRQYKVFKTHKHLMKH 120
           V K FE     + G+P +VS +AA +  + +AHAFLA+RKFPINYRQY  FKTHK LM+H
Sbjct: 61  VTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRH 120

Query: 121 GDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSSYRFVTQNFWLLYIFLLFAVE 180
           GDT+LW+IQA+TGFAMFFL S+HL++M+T+P++IGP  SS+R V++  W LY+ LLFAVE
Sbjct: 121 GDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVE 180

Query: 181 LHGSIGLYRLAIKWGWF----KNVSIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKE 236
           LHGS+GLYRLA+KWGWF     + +   L+K+K  MS F IVLGL T+GAY+KKGLE  +
Sbjct: 181 LHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTD 240

Query: 237 NGI 239
             I
Sbjct: 241 PNI 243



>pdb|1E7P|C Chain C, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|F Chain F, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 256

 Score =  288 bits (736), Expect = 6e-79
 Identities = 140/243 (57%), Positives = 179/243 (73%), Gaps = 4/243 (1%)

Query: 1   MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYK 60
           M  E I+E Y G +   KKS + AKLD+ QSATGL L LFMI HMF VS+IL+ D  M  
Sbjct: 1   MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLW 60

Query: 61  VAKFFEGSLFLKAGEPAIVSVVAAGIILILVAHAFLALRKFPINYRQYKVFKTHKHLMKH 120
           V K F+     + G+P +VS +AA +  + +AHAFLA+RKFPINYRQY  FKTHK LM+H
Sbjct: 61  VTKKFQLDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRH 120

Query: 121 GDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSSYRFVTQNFWLLYIFLLFAVE 180
           GDT+LW+IQA+TGFAMFFL S+HL++M+T+P++IGP  SS+R V++  W LY+ LLFAVE
Sbjct: 121 GDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVE 180

Query: 181 LHGSIGLYRLAIKWGWF----KNVSIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKE 236
           LHGS+GLYRLA+KWGWF     + +   L+K+K  MS F IVLGL T+GAY+KKGLE  +
Sbjct: 181 LHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTD 240

Query: 237 NGI 239
             I
Sbjct: 241 PNI 243



>pdb|1E7P|I Chain I, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|L Chain L, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 254

 Score =  288 bits (736), Expect = 6e-79
 Identities = 140/243 (57%), Positives = 179/243 (73%), Gaps = 4/243 (1%)

Query: 1   MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYK 60
           M  E I+E Y G +   KKS + AKLD+ QSATGL L LFMI HMF VS+IL+ D  M  
Sbjct: 1   MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLW 60

Query: 61  VAKFFEGSLFLKAGEPAIVSVVAAGIILILVAHAFLALRKFPINYRQYKVFKTHKHLMKH 120
           V K F+     + G+P +VS +AA +  + +AHAFLA+RKFPINYRQY  FKTHK LM+H
Sbjct: 61  VTKKFQLDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRH 120

Query: 121 GDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSSYRFVTQNFWLLYIFLLFAVE 180
           GDT+LW+IQA+TGFAMFFL S+HL++M+T+P++IGP  SS+R V++  W LY+ LLFAVE
Sbjct: 121 GDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVE 180

Query: 181 LHGSIGLYRLAIKWGWF----KNVSIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKE 236
           LHGS+GLYRLA+KWGWF     + +   L+K+K  MS F IVLGL T+GAY+KKGLE  +
Sbjct: 181 LHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTD 240

Query: 237 NGI 239
             I
Sbjct: 241 PNI 243



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,396,735
Number of Sequences: 13198
Number of extensions: 51329
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 3
length of query: 255
length of database: 2,899,336
effective HSP length: 86
effective length of query: 169
effective length of database: 1,764,308
effective search space: 298168052
effective search space used: 298168052
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)