BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644824|ref|NP_206994.1|
enoyl-(acyl-carrier-protein) reductase (NADH) (fabI) [Helicobacter
pylori 26695]
(275 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Redu... 230 1e-61
pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase In... 230 1e-61
pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Eno... 228 4e-61
pdb|1D7O|A Chain A, Crystal Structure Of Brassica Napus Eno... 134 9e-33
pdb|1ENO| Brassica Napus Enoyl Acp ReductaseNAD BINARY CO... 134 9e-33
pdb|1CWU|A Chain A, Brassica Napus Enoyl Acp Reductase A138... 133 3e-32
pdb|1BVR|A Chain A, M.Tb. Enoyl-Acp Reductase (Inha) In Com... 115 5e-27
pdb|1ENY| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein... 115 5e-27
pdb|1ENZ| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein... 114 1e-26
pdb|1FMC|A Chain A, 7-Alpha-Hydroxysteroid Dehydrogenase Co... 79 6e-16
pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph... 64 2e-11
pdb|1HDC|A Chain A, 3-Alpha, 20-Beta-Hydroxysteroid Dehydro... 62 5e-11
pdb|1JA9|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydro... 49 8e-07
pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Redu... 48 1e-06
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Redu... 48 1e-06
pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bi... 47 2e-06
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-... 42 8e-05
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp... 42 1e-04
pdb|1E92|A Chain A, Pteridine Reductase 1 From Leishmania M... 37 0.002
pdb|1E7W|A Chain A, One Active Site, Two Modes Of Reduction... 37 0.002
pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogen... 34 0.016
pdb|1FK8|A Chain A, The Crystal Structure Of The Binary Com... 33 0.027
pdb|1IOL| Estrogenic 17-Beta Hydroxysteroid Dehydrogenase... 32 0.079
pdb|1FDT| Human 17-Beta-Hydroxysteroid-Dehydrogenase Type... 31 0.18
pdb|1FDW| Human 17-Beta-Hydroxysteroid-Dehydrogenase Type... 31 0.18
pdb|1A27| Human 17-Beta-Hydroxysteroid-Dehydrogenase Type... 31 0.18
pdb|1FDU|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogen... 31 0.18
pdb|1BHS| Human Estrogenic 17beta-Hydroxysteroid Dehydrog... 31 0.18
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State ... 27 1.9
pdb|4PFK| Phosphofructokinase (E.C.2.7.1.11) Complex With... 27 1.9
pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Str... 27 2.5
pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35 >g... 27 2.5
pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 C... 27 2.5
pdb|1I3S|C Chain C, The 2.7 Angstrom Resolution Crystal Str... 27 2.5
pdb|1EV1|1 Chain 1, Echovirus 1 27 3.3
pdb|1K42|A Chain A, The Solution Structure Of The Cbm4-2 Ca... 27 3.3
pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase >g... 27 3.3
pdb|4FAB|H Chain H, 4-4-20 (IgG2akappa) Fab Fragment - Fluo... 26 5.7
pdb|1FLR|H Chain H, 4-4-20 Fab Fragment 26 5.7
pdb|3TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex Wit... 25 7.4
pdb|1ESP| Neutral Protease Mutant E144s 25 7.4
pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate... 25 7.4
pdb|1THL| Thermolysin (E.C.3.4.24.27) Complexed With A No... 25 7.4
pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76d... 25 9.7
>pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LX6|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LXC|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1LXC|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1I2Z|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1C14|A Chain A, Crystal Structure Of E Coli Enoyl Reductase-Nad+-Triclosan
Complex
pdb|1C14|B Chain B, Crystal Structure Of E Coli Enoyl Reductase-Nad+-Triclosan
Complex
pdb|1I2Z|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I30|A Chain A, E. Coli Enoyl Reductase +nad+sb385826
pdb|1I30|B Chain B, E. Coli Enoyl Reductase +nad+sb385826
Length = 262
Score = 230 bits (587), Expect = 1e-61
Identities = 120/262 (45%), Positives = 174/262 (65%), Gaps = 1/262 (0%)
Query: 1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYV 60
MGFL GK+ L+ GVA+ SIAYGIAQ+ +GA LAFTY N+ L+ RV A +L S V
Sbjct: 1 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIV 60
Query: 61 YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLET-SKSAFNTAMEIS 119
+ DV+++ +++ + K D VHS+ FAP + L+G + ++ F A +IS
Sbjct: 61 LQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDIS 120
Query: 120 VYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKH 179
YS + + + +LN G+++LTLSYLG+ + + +YNVMGLAKA+LE+ VRY+A +G
Sbjct: 121 SYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPE 180
Query: 180 HIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGV 239
+RVNA+SAGPIRTLA+SGI DFR +L E P+R+ V++E+VGN+ +L S LS+G+
Sbjct: 181 GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGI 240
Query: 240 SGEVHFVDAGYHVMGMGAVEEK 261
SGEV VD G+ + M +E K
Sbjct: 241 SGEVVHVDGGFSIAAMNELELK 262
>pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|A Chain A, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|B Chain B, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|C Chain C, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|D Chain D, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|E Chain E, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|F Chain F, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|H Chain H, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
Length = 265
Score = 230 bits (587), Expect = 1e-61
Identities = 120/262 (45%), Positives = 174/262 (65%), Gaps = 1/262 (0%)
Query: 1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYV 60
MGFL GK+ L+ GVA+ SIAYGIAQ+ +GA LAFTY N+ L+ RV A +L S V
Sbjct: 4 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIV 63
Query: 61 YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLET-SKSAFNTAMEIS 119
+ DV+++ +++ + K D VHS+ FAP + L+G + ++ F A +IS
Sbjct: 64 LQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDIS 123
Query: 120 VYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKH 179
YS + + + +LN G+++LTLSYLG+ + + +YNVMGLAKA+LE+ VRY+A +G
Sbjct: 124 SYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPE 183
Query: 180 HIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGV 239
+RVNA+SAGPIRTLA+SGI DFR +L E P+R+ V++E+VGN+ +L S LS+G+
Sbjct: 184 GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGI 243
Query: 240 SGEVHFVDAGYHVMGMGAVEEK 261
SGEV VD G+ + M +E K
Sbjct: 244 SGEVVHVDGGFSIAAMNELELK 265
>pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1QG6|A Chain A, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|B Chain B, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|C Chain C, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|D Chain D, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1D8A|B Chain B, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
pdb|1DFH|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1D8A|A Chain A, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
pdb|1DFG|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFG|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFI|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|C Chain C, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|D Chain D, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
Length = 261
Score = 228 bits (582), Expect = 4e-61
Identities = 119/261 (45%), Positives = 173/261 (65%), Gaps = 1/261 (0%)
Query: 2 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVY 61
GFL GK+ L+ GVA+ SIAYGIAQ+ +GA LAFTY N+ L+ RV A +L S V
Sbjct: 1 GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVL 60
Query: 62 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLET-SKSAFNTAMEISV 120
+ DV+++ +++ + K D VHS+ FAP + L+G + ++ F A +IS
Sbjct: 61 QCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISS 120
Query: 121 YSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHH 180
YS + + + +LN G+++LTLSYLG+ + + +YNVMGLAKA+LE+ VRY+A +G
Sbjct: 121 YSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEG 180
Query: 181 IRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVS 240
+RVNA+SAGPIRTLA+SGI DFR +L E P+R+ V++E+VGN+ +L S LS+G+S
Sbjct: 181 VRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGIS 240
Query: 241 GEVHFVDAGYHVMGMGAVEEK 261
GEV VD G+ + M +E K
Sbjct: 241 GEVVHVDGGFSIAAMNELELK 261
>pdb|1D7O|A Chain A, Crystal Structure Of Brassica Napus Enoyl Acyl Carrier
Protein Reductase Complexed With Nad And Triclosan
Length = 297
Score = 134 bits (338), Expect = 9e-33
Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 37/287 (12%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-------AFTYLNESLE----------- 45
L+GK+ I G+A++ + +A+S GA + A SL
Sbjct: 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP 65
Query: 46 -------KRVRPIAQELNSPYVYELDVSKEEHFKSLYN--------SVKKDLGSLDFIVH 90
K+V P+ ++P DV + + N V++D GS+D +VH
Sbjct: 66 DGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVH 125
Query: 91 SVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK 150
S+A P+ + LLETS+ + A+ S YS + L + P++N G + ++L+Y+ S +
Sbjct: 126 SLANGPE--VSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASER 183
Query: 151 YMAHYNV-MGLAKAALESAVRYLAVDLG-KHHIRVNALSAGPIRTLASSGIADFRMILKW 208
+ Y M AKAALES R LA + G K +IRVN +SAGP+ + A+ I ++++
Sbjct: 184 IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEY 243
Query: 209 NEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGM 255
+ NAP++K ++ +EVGNA +L+S L+S ++G +VD G + MG+
Sbjct: 244 SYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLNSMGV 290
>pdb|1ENO| Brassica Napus Enoyl Acp ReductaseNAD BINARY COMPLEX AT Ph 8.0 And
Room Temperature
pdb|1ENP| Brassica Napus Enoyl Acp ReductaseNADH BINARY COMPLEX AT Ph 8.0
And Room Temperature
Length = 312
Score = 134 bits (338), Expect = 9e-33
Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 37/287 (12%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-------AFTYLNESLE----------- 45
L+GK+ I G+A++ + +A+S GA + A SL
Sbjct: 16 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP 75
Query: 46 -------KRVRPIAQELNSPYVYELDVSKEEHFKSLYN--------SVKKDLGSLDFIVH 90
K+V P+ ++P DV + + N V++D GS+D +VH
Sbjct: 76 DGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVH 135
Query: 91 SVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK 150
S+A P+ + LLETS+ + A+ S YS + L + P++N G + ++L+Y+ S +
Sbjct: 136 SLANGPE--VSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASER 193
Query: 151 YMAHYNV-MGLAKAALESAVRYLAVDLG-KHHIRVNALSAGPIRTLASSGIADFRMILKW 208
+ Y M AKAALES R LA + G K +IRVN +SAGP+ + A+ I ++++
Sbjct: 194 IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEY 253
Query: 209 NEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGM 255
+ NAP++K ++ +EVGNA +L+S L+S ++G +VD G + MG+
Sbjct: 254 SYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLNSMGV 300
>pdb|1CWU|A Chain A, Brassica Napus Enoyl Acp Reductase A138g Mutant Complexed
With Nad+ And Thienodiazaborine
pdb|1CWU|B Chain B, Brassica Napus Enoyl Acp Reductase A138g Mutant Complexed
With Nad+ And Thienodiazaborine
Length = 296
Score = 133 bits (334), Expect = 3e-32
Identities = 88/287 (30%), Positives = 148/287 (50%), Gaps = 37/287 (12%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-------AFTYLNESLE----------- 45
L+GK+ I G+A++ + +A+S GA + A SL
Sbjct: 5 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP 64
Query: 46 -------KRVRPIAQELNSPYVYELDVSKEEHFKSLYN--------SVKKDLGSLDFIVH 90
K+V P+ ++P DV + + N V++D GS+D +VH
Sbjct: 65 DGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVH 124
Query: 91 SVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK 150
S+ P+ + LLETS+ + A+ S YS + L + P++N G + ++L+Y+ S +
Sbjct: 125 SLGNGPE--VSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASER 182
Query: 151 YMAHYNV-MGLAKAALESAVRYLAVDLG-KHHIRVNALSAGPIRTLASSGIADFRMILKW 208
+ Y M AKAALES R LA + G K +IRVN +SAGP+ + A+ I ++++
Sbjct: 183 IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEY 242
Query: 209 NEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGM 255
+ NAP++K ++ +EVGNA +L+S L+S ++G +VD G + MG+
Sbjct: 243 SYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLNSMGV 289
>pdb|1BVR|A Chain A, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|B Chain B, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|C Chain C, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|D Chain D, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|E Chain E, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|F Chain F, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
Length = 268
Score = 115 bits (288), Expect = 5e-27
Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 19/266 (7%)
Query: 2 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPY-V 60
G L GK+ L+ G+ + SIA+ IA+ QGA L T + + ++ I L + +
Sbjct: 2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL--RLIQRITDRLPAKAPL 59
Query: 61 YELDVSKEEHFKSLYNSVKKDLGS---LDFIVHSVAFAPKEALE-GSLLETSKSAFNTAM 116
ELDV EEH SL V + +G+ LD +VHS+ F P+ + + + + +
Sbjct: 60 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGI 119
Query: 117 EISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDL 176
IS YS + L P++N G S++ + + ++ M YN M +AK+ALES R++A +
Sbjct: 120 HISAYSYASMAKALLPIMNPGGSIVGMDF-DPSRAMPAYNWMTVAKSALESVNRFVAREA 178
Query: 177 GKHHIRVNALSAGPIRTLASSGI----------ADFRMILKWNEINAPLRKNV-SLEEVG 225
GK+ +R N ++AGPIRTLA S I A +++ + + AP+ N+ V
Sbjct: 179 GKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVA 238
Query: 226 NAGMYLLSSLSSGVSGEVHFVDAGYH 251
LLS +G++ + D G H
Sbjct: 239 KTVCALLSDWLPATTGDIIYADGGAH 264
>pdb|1ENY| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein (Acp) Reductase;
Chain: Null; Synonym: Inha; Engineered: Yes
pdb|1ZID| Long Fatty Acid Chain Enoyl-Acp Reductase (Inha) In Complex With
An Isonicotinic-Acyl-Nadh Inhibitor
Length = 268
Score = 115 bits (288), Expect = 5e-27
Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 19/266 (7%)
Query: 2 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPY-V 60
G L GK+ L+ G+ + SIA+ IA+ QGA L T + + ++ I L + +
Sbjct: 2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL--RLIQRITDRLPAKAPL 59
Query: 61 YELDVSKEEHFKSLYNSVKKDLGS---LDFIVHSVAFAPKEALE-GSLLETSKSAFNTAM 116
ELDV EEH SL V + +G+ LD +VHS+ F P+ + + + + +
Sbjct: 60 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGI 119
Query: 117 EISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDL 176
IS YS + L P++N G S++ + + ++ M YN M +AK+ALES R++A +
Sbjct: 120 HISAYSYASMAKALLPIMNPGGSIVGMDF-DPSRAMPAYNWMTVAKSALESVNRFVAREA 178
Query: 177 GKHHIRVNALSAGPIRTLASSGI----------ADFRMILKWNEINAPLRKNV-SLEEVG 225
GK+ +R N ++AGPIRTLA S I A +++ + + AP+ N+ V
Sbjct: 179 GKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVA 238
Query: 226 NAGMYLLSSLSSGVSGEVHFVDAGYH 251
LLS +G++ + D G H
Sbjct: 239 KTVCALLSDWLPATTGDIIYADGGAH 264
>pdb|1ENZ| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein (Acp) Reductase;
Chain: Null; Synonym: Inha; Engineered: Yes; Mutation:
S94a
Length = 268
Score = 114 bits (285), Expect = 1e-26
Identities = 82/266 (30%), Positives = 135/266 (49%), Gaps = 19/266 (7%)
Query: 2 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPY-V 60
G L GK+ L+ G+ + SIA+ IA+ QGA L T + + ++ I L + +
Sbjct: 2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL--RLIQRITDRLPAKAPL 59
Query: 61 YELDVSKEEHFKSLYNSVKKDLGS---LDFIVHSVAFAPKEALE-GSLLETSKSAFNTAM 116
ELDV EEH SL V + +G+ LD +VH++ F P+ + + + + +
Sbjct: 60 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHAIGFMPQTGMGINPFFDAPYADVSKGI 119
Query: 117 EISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDL 176
IS YS + L P++N G S++ + + ++ M YN M +AK+ALES R++A +
Sbjct: 120 HISAYSYASMAKALLPIMNPGGSIVGMDF-DPSRAMPAYNWMTVAKSALESVNRFVAREA 178
Query: 177 GKHHIRVNALSAGPIRTLASSGI----------ADFRMILKWNEINAPLRKNV-SLEEVG 225
GK+ +R N ++AGPIRTLA S I A +++ + + AP+ N+ V
Sbjct: 179 GKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVA 238
Query: 226 NAGMYLLSSLSSGVSGEVHFVDAGYH 251
LLS +G++ + D G H
Sbjct: 239 KTVCALLSDWLPATTGDIIYADGGAH 264
>pdb|1FMC|A Chain A, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
pdb|1FMC|B Chain B, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHI|B Chain B, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHH|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nad+
pdb|1AHH|B Chain B, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nad+
Length = 255
Score = 79.0 bits (193), Expect = 6e-16
Identities = 62/249 (24%), Positives = 115/249 (45%), Gaps = 11/249 (4%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSP-YVYE 62
L GK +I G I IA + GA++ + +N V Q+L +
Sbjct: 9 LDGKCAIITGAG--AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66
Query: 63 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYS 122
D++ E+ +L + LG +D +V++ + + + + F A E++V+S
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMAD-----FRRAYELNVFS 121
Query: 123 LIELTNTLKPLL--NNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHH 180
L+ + P + N G +LT++ + + + +KAA VR +A DLG+ +
Sbjct: 122 FFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKN 181
Query: 181 IRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVS 240
IRVN ++ G I T A + + K + + P+R+ +++ NA ++L S +S VS
Sbjct: 182 IRVNGIAPGAILTDALKSVITPEIEQKMLQ-HTPIRRLGQPQDIANAALFLCSPAASWVS 240
Query: 241 GEVHFVDAG 249
G++ V G
Sbjct: 241 GQILTVSGG 249
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 63.5 bits (153), Expect = 2e-11
Identities = 47/173 (27%), Positives = 90/173 (51%), Gaps = 9/173 (5%)
Query: 82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTL-KPLLNNGA-- 138
+G +D +V++ A + LE +K AF+ + +++ S+ +++ + + ++N G
Sbjct: 74 IGPVDLLVNNAALVIMQPF----LEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPG 129
Query: 139 SVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT-LASS 197
S++ +S + + + K A+ + +A++LG H IRVN+++ + T +
Sbjct: 130 SIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKK 189
Query: 198 GIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250
AD K E + PLRK +E+V N+ ++LLS S+ SG VDAGY
Sbjct: 190 VSADPEFARKLKERH-PLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGY 241
>pdb|1HDC|A Chain A, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|1HDC|B Chain B, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|1HDC|C Chain C, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|1HDC|D Chain D, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|2HSD|A Chain A, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
pdb|2HSD|B Chain B, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
pdb|2HSD|C Chain C, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
pdb|2HSD|D Chain D, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
Length = 253
Score = 62.4 bits (150), Expect = 5e-11
Identities = 68/253 (26%), Positives = 116/253 (44%), Gaps = 20/253 (7%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYE- 62
L GK +I G A + + A+ GA + L + L++ A+EL Y+
Sbjct: 3 LSGKTVIITGGA--RGLGAEAARQAVAAGARVV---LADVLDEEGAATARELGDAARYQH 57
Query: 63 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLET-SKSAFNTAMEISVY 121
LDV+ EE ++ + +++ GS+D +V++ + G LET S F +EI++
Sbjct: 58 LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGIST-----GMFLETESVERFRKVVEINLT 112
Query: 122 SLIELTNTLKPLLNN--GASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKH 179
+ T+ P + + G S++ +S +A + G +K + + AV+LG
Sbjct: 113 GVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTD 172
Query: 180 HIRVNALSAGPIRT--LASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSS 237
IRVN++ G T A +GI + N N P+ + E+ A + LLS SS
Sbjct: 173 RIRVNSVHPGMTYTPMTAETGIRQG----EGNYPNTPMGRVGEPGEIAGAVVKLLSDTSS 228
Query: 238 GVSGEVHFVDAGY 250
V+G VD G+
Sbjct: 229 YVTGAELAVDGGW 241
>pdb|1JA9|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Reductase In Complex With Nadph And Pyroquilon
Length = 274
Score = 48.5 bits (114), Expect = 8e-07
Identities = 46/195 (23%), Positives = 79/195 (39%), Gaps = 13/195 (6%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNS----PY 59
L GK L G + I GIA +GA++ Y + S K + EL
Sbjct: 19 LAGKVALTTGAG--RGIGRGIAIELGRRGASVVVNYGSSS--KAAEEVVAELKKLGAQGV 74
Query: 60 VYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEIS 119
+ D+SK +L++ G LDF++ + + LE ++ F+ ++
Sbjct: 75 AIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGME----VWCDELEVTQELFDKVFNLN 130
Query: 120 VYSLIELTNT-LKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGK 178
+ LK G +LT S + ++ + +KAA+E R AVD G
Sbjct: 131 TRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGA 190
Query: 179 HHIRVNALSAGPIRT 193
+ VN ++ G ++T
Sbjct: 191 KGVTVNCIAPGGVKT 205
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 47.8 bits (112), Expect = 1e-06
Identities = 58/268 (21%), Positives = 108/268 (39%), Gaps = 36/268 (13%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN--ESLEKRVRPIAQELNSPYVY 61
L+GK L+ G + I +A +G + Y N ES E+ V I + +
Sbjct: 27 LEGKVALVTGAG--RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACV 84
Query: 62 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHS---VAFAPKEALEGSLLETSKSAFNTAMEI 118
+ +V E ++ K G LD + + V+F G + + + F+ I
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSF-------GHVKDVTPEEFDRVFTI 137
Query: 119 SVYSLIELTN-TLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLG 177
+ + K L G +L S G K + + V +K A+E+ R +A+D+
Sbjct: 138 NTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMA 197
Query: 178 KHHIRVNALSAGPIRT----------------LASSGIADFRMILKWNEINAPLRKNVSL 221
I VN ++ G I+T L++ + ++ + +W +PLR+
Sbjct: 198 DKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV-QW----SPLRRVGLP 252
Query: 222 EEVGNAGMYLLSSLSSGVSGEVHFVDAG 249
++ +L S+ V+G+V +D G
Sbjct: 253 IDIARVVCFLASNDGGWVTGKVIGIDGG 280
>pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
Length = 283
Score = 47.8 bits (112), Expect = 1e-06
Identities = 58/268 (21%), Positives = 108/268 (39%), Gaps = 36/268 (13%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN--ESLEKRVRPIAQELNSPYVY 61
L+GK L+ G + I +A +G + Y N ES E+ V I + +
Sbjct: 27 LEGKVALVTGAG--RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACV 84
Query: 62 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHS---VAFAPKEALEGSLLETSKSAFNTAMEI 118
+ +V E ++ K G LD + + V+F G + + + F+ I
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSF-------GHVKDVTPEEFDRVFTI 137
Query: 119 SVYSLIELTN-TLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLG 177
+ + K L G +L S G K + + V +K A+E+ R +A+D+
Sbjct: 138 NTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMA 197
Query: 178 KHHIRVNALSAGPIRT----------------LASSGIADFRMILKWNEINAPLRKNVSL 221
I VN ++ G I+T L++ + ++ + +W +PLR+
Sbjct: 198 DKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV-QW----SPLRRVGLP 252
Query: 222 EEVGNAGMYLLSSLSSGVSGEVHFVDAG 249
++ +L S+ V+G+V +D G
Sbjct: 253 IDIARVVCFLASNDGGWVTGKVIGIDGG 280
>pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|B Chain B, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|C Chain C, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|D Chain D, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|E Chain E, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|F Chain F, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|G Chain G, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|H Chain H, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|I Chain I, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|J Chain J, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|K Chain K, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|L Chain L, Mannitol Dehydrogenase From Agaricus Bisporus
Length = 265
Score = 47.0 bits (110), Expect = 2e-06
Identities = 52/254 (20%), Positives = 100/254 (38%), Gaps = 24/254 (9%)
Query: 11 IVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRV-RPIAQELN-SPYVYELDVSKE 68
I+ N+ I ++ GA +A Y + + V + +E Y+ DVS
Sbjct: 17 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNT 76
Query: 69 EHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTN 128
+ + DLG + ++ + + + E + F +++V+ +
Sbjct: 77 DIVTKTIQQIDADLGPISGLIANAGVSVVKPAT----ELTHEDFAFVYDVNVFGVFNTCR 132
Query: 129 TLKPLL-------------NNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVD 175
+ L + + ++ S L + YN +KAA + V+ LA +
Sbjct: 133 AVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNS---SKAACSNLVKGLAAE 189
Query: 176 LGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSL 235
IRVNALS G + T ++ + + I N PL + EE+ + LLS
Sbjct: 190 WASAGIRVNALSPGYVNTDQTAHMD--KKIRDHQASNIPLNRFAQPEEMTGQAILLLSDH 247
Query: 236 SSGVSGEVHFVDAG 249
++ ++G +F+D G
Sbjct: 248 ATYMTGGEYFIDGG 261
>pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 42.0 bits (97), Expect = 8e-05
Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 33/263 (12%)
Query: 7 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSP----YVYE 62
K L+ G + I IA G +A N++ K V A E+N +
Sbjct: 3 KVALVTGAG--QGIGKAIALRLVKDGFAVAIADYNDATAKAV---ASEINQAGGHAVAVK 57
Query: 63 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYS 122
+DVS + + +K LG D IV++ AP +E E +N ++ ++
Sbjct: 58 VDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWG 117
Query: 123 LIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIR 182
+ K + G + S G V +K A+ + A DL I
Sbjct: 118 IQAAVEAFKKEGHGGKIINACSQAGHVG-NPELAVYSSSKFAVRGLTQTAARDLAPLGIT 176
Query: 183 VNALSAGPIRT----------------LASSGIADFRMILKWNEINAPLRKNVSLEEVGN 226
VN G ++T G A+F + ++ P E+V
Sbjct: 177 VNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEP-------EDVAA 229
Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249
YL S S ++G+ +D G
Sbjct: 230 CVSYLASPDSDYMTGQSLLIDGG 252
>pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 41.6 bits (96), Expect = 1e-04
Identities = 57/260 (21%), Positives = 108/260 (40%), Gaps = 16/260 (6%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQE--LN-SPYV 60
LKG L+ G +K I Y I + GA + NE I +E LN V
Sbjct: 19 LKGTTALVTG--GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSV 76
Query: 61 YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISV 120
+L +S+ E K + G L+ +V++ + + ++ +N M +
Sbjct: 77 CDL-LSRTERDKLMQTVAHVFDGKLNILVNNAGVV----IHKEAKDFTEKDYNIIMGTNF 131
Query: 121 YSLIELTNTLKPLL--NNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGK 178
+ L+ PLL + +V+ LS + + ++ +K A+ + LA + K
Sbjct: 132 EAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAK 191
Query: 179 HHIRVNALSAGPIRT-LASSGIADFRMILKWNE---INAPLRKNVSLEEVGNAGMYLLSS 234
+IRVN+++ G I T L + I + + + P+ + +EV +L
Sbjct: 192 DNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFP 251
Query: 235 LSSGVSGEVHFVDAGYHVMG 254
+S ++G++ + D G+ G
Sbjct: 252 AASYITGQIIWADGGFTANG 271
>pdb|1E92|A Chain A, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
pdb|1E92|B Chain B, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
pdb|1E92|C Chain C, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
pdb|1E92|D Chain D, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
Length = 288
Score = 37.4 bits (85), Expect = 0.002
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 155 YNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKW--NEIN 212
Y + +AK ALE R A++L IRVN + G S + D W +
Sbjct: 191 YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPG------LSVLVDDMPPAVWEGHRSK 244
Query: 213 APL-RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250
PL +++ S EV + ++L SS + ++G VD GY
Sbjct: 245 VPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 283
>pdb|1E7W|A Chain A, One Active Site, Two Modes Of Reduction Correlate The
Mechanism Of Leishmania Pteridine Reductase With Pterin
Metabolism And Antifolate Drug Resistance In Trpanosomes
pdb|1E7W|B Chain B, One Active Site, Two Modes Of Reduction Correlate The
Mechanism Of Leishmania Pteridine Reductase With Pterin
Metabolism And Antifolate Drug Resistance In Trpanosomes
Length = 291
Score = 37.4 bits (85), Expect = 0.002
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 155 YNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKW--NEIN 212
Y + +AK ALE R A++L IRVN + G S + D W +
Sbjct: 194 YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPG------LSVLVDDMPPAVWEGHRSK 247
Query: 213 APL-RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250
PL +++ S EV + ++L SS + ++G VD GY
Sbjct: 248 VPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 286
>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|B Chain B, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|E Chain E, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|F Chain F, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
Length = 261
Score = 34.3 bits (77), Expect = 0.016
Identities = 50/201 (24%), Positives = 79/201 (38%), Gaps = 31/201 (15%)
Query: 64 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFA-PKEALEGSLLETSK-------SAFNTA 115
DV+ E +L S K+ G LD ++++ P + E SL + +K AF +
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 116 MEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVD 175
E Y + N +K + N +SV HY +K ++ LA++
Sbjct: 125 REAIKYFV---ENDIKGTVINMSSVHEKI---PWPLFVHY---AASKGGMKLMTETLALE 175
Query: 176 LGKHHIRVNALSAGPIRTLASSGI-------ADFRMILKWNEINAPLRKNVSLEEVGNAG 228
IRVN + G I T ++ AD ++ I P EE+
Sbjct: 176 YAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEP-------EEIAAVA 228
Query: 229 MYLLSSLSSGVSGEVHFVDAG 249
+L SS +S V+G F D G
Sbjct: 229 AWLASSEASYVTGITLFADGG 249
>pdb|1FK8|A Chain A, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
pdb|1FJH|A Chain A, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FJH|B Chain B, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FK8|B Chain B, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
Length = 257
Score = 33.5 bits (75), Expect = 0.027
Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 1/90 (1%)
Query: 161 AKAALESAVRYLAVDLGKHHIRVNALSAGPIRT-LASSGIADFRMILKWNEINAPLRKNV 219
+K AL AVR A G+ +R+N ++ G T L +G+ D R + P+ +
Sbjct: 158 SKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRA 217
Query: 220 SLEEVGNAGMYLLSSLSSGVSGEVHFVDAG 249
E+ + +L+S +S V G +D G
Sbjct: 218 EPSEMASVIAFLMSPAASYVHGAQIVIDGG 247
>pdb|1IOL| Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
17-Beta-Estradiol
Length = 327
Score = 32.0 bits (71), Expect = 0.079
Identities = 38/167 (22%), Positives = 64/167 (37%), Gaps = 8/167 (4%)
Query: 29 FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFI 88
F ATL L + R +A S +LDV + + V + G +D +
Sbjct: 30 FKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE--GRVDVL 87
Query: 89 VHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGAS--VLTLSYL 146
V + L G L + A + +E++V + + P + S VL +
Sbjct: 88 VCNAGLG----LLGPLEALGEDAVASVLEVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV 143
Query: 147 GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
G + +V +K ALE LAV L + ++ + GP+ T
Sbjct: 144 GGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190
>pdb|1FDT| Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With
Estradiol And Nadp+
pdb|1FDS| Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With
17-Beta-Estradiol
Length = 327
Score = 30.8 bits (68), Expect = 0.18
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 29 FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFI 88
F ATL L + R +A S +LDV + + V + G +D +
Sbjct: 30 FKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE--GRVDVL 87
Query: 89 VHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGAS--VLTLSYL 146
V + L G L + A + ++++V + + P + S VL +
Sbjct: 88 VCNAGLG----LLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV 143
Query: 147 GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
G + +V +K ALE LAV L + ++ + GP+ T
Sbjct: 144 GGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190
>pdb|1FDW| Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221q
Complexed With Estradiol
Length = 327
Score = 30.8 bits (68), Expect = 0.18
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 29 FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFI 88
F ATL L + R +A S +LDV + + V + G +D +
Sbjct: 30 FKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE--GRVDVL 87
Query: 89 VHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGAS--VLTLSYL 146
V + L G L + A + ++++V + + P + S VL +
Sbjct: 88 VCNAGLG----LLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV 143
Query: 147 GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
G + +V +K ALE LAV L + ++ + GP+ T
Sbjct: 144 GGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190
>pdb|1A27| Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C-Terminal
Deletion Mutant Complexed With Estradiol And Nadp+
Length = 289
Score = 30.8 bits (68), Expect = 0.18
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 29 FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFI 88
F ATL L + R +A S +LDV + + V + G +D +
Sbjct: 30 FKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE--GRVDVL 87
Query: 89 VHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGAS--VLTLSYL 146
V + L G L + A + ++++V + + P + S VL +
Sbjct: 88 VCNAGLG----LLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV 143
Query: 147 GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
G + +V +K ALE LAV L + ++ + GP+ T
Sbjct: 144 GGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190
>pdb|1FDU|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDV|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDV|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
Length = 327
Score = 30.8 bits (68), Expect = 0.18
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 29 FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFI 88
F ATL L + R +A S +LDV + + V + G +D +
Sbjct: 30 FKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE--GRVDVL 87
Query: 89 VHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGAS--VLTLSYL 146
V + L G L + A + ++++V + + P + S VL +
Sbjct: 88 VCNAGLG----LLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV 143
Query: 147 GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
G + +V +K ALE LAV L + ++ + GP+ T
Sbjct: 144 GGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190
>pdb|1BHS| Human Estrogenic 17beta-Hydroxysteroid Dehydrogenase
pdb|1DHT|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dihydrotestosterone
pdb|3DHE|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dehydroepiandrosterone
pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1EQU|B Chain B, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
Length = 327
Score = 30.8 bits (68), Expect = 0.18
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 29 FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFI 88
F ATL L + R +A S +LDV + + V + G +D +
Sbjct: 30 FKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE--GRVDVL 87
Query: 89 VHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGAS--VLTLSYL 146
V + L G L + A + ++++V + + P + S VL +
Sbjct: 88 VCNAGLG----LLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV 143
Query: 147 GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
G + +V +K ALE LAV L + ++ + GP+ T
Sbjct: 144 GGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190
>pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
Length = 319
Score = 27.3 bits (59), Expect = 1.9
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN 56
L+GK G VG+ NN+ + + IA++ N+ ++++R+ +++EL+
Sbjct: 276 LEGKGGRCVGIQNNQLVDHDIAEALANK----------HTIDQRMYALSKELS 318
>pdb|4PFK| Phosphofructokinase (E.C.2.7.1.11) Complex With
Fructose-6-Phosphate And Adenosine
Diphosphate(Slash)Mg++
pdb|3PFK| Phosphofructokinase (E.C.2.7.1.11)
Length = 319
Score = 27.3 bits (59), Expect = 1.9
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN 56
L+GK G VG+ NN+ + + IA++ N+ ++++R+ +++EL+
Sbjct: 276 LEGKGGRCVGIQNNQLVDHDIAEALANK----------HTIDQRMYALSKELS 318
>pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 26.9 bits (58), Expect = 2.5
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 11 IVGVANNKSIAYGIAQSCFNQGAT--LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKE 68
+V N+ +A + + F G+ L+F Y N K + P A E+N +YE DV
Sbjct: 140 LVDERNDYYVAVCVLKPGFENGSNQVLSFEY-NPIGNKVIVPFAHEINDTGLYEYDV--- 195
Query: 69 EHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELT 127
+ +SV+ D + V S+ +L ++++ N +M +Y +E T
Sbjct: 196 ---VAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSM---IYKALEFT 248
>pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35
pdb|1P35|A Chain A, Crystal Structure Of Baculovirus P35
pdb|1P35|C Chain C, Crystal Structure Of Baculovirus P35
Length = 299
Score = 26.9 bits (58), Expect = 2.5
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 11 IVGVANNKSIAYGIAQSCFNQGAT--LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKE 68
+V N+ +A + + F G+ L+F Y N K + P A E+N +YE DV
Sbjct: 140 LVDERNDYYVAVCVLKPGFENGSNQVLSFEY-NPIGNKVIVPFAHEINDTGLYEYDV--- 195
Query: 69 EHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELT 127
+ +SV+ D + V S+ +L ++++ N +M +Y +E T
Sbjct: 196 ---VAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSM---IYKALEFT 248
>pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 COMPLEX
Length = 300
Score = 26.9 bits (58), Expect = 2.5
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 11 IVGVANNKSIAYGIAQSCFNQGAT--LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKE 68
+V N+ +A + + F G+ L+F Y N K + P A E+N +YE DV
Sbjct: 142 LVDERNDYYVAVCVLKPGFENGSNQVLSFEY-NPIGNKVIVPFAHEINDTGLYEYDV--- 197
Query: 69 EHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELT 127
+ +SV+ D + V S+ +L ++++ N +M +Y +E T
Sbjct: 198 ---VAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSM---IYKALEFT 250
>pdb|1I3S|C Chain C, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|A Chain A, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|B Chain B, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 26.9 bits (58), Expect = 2.5
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 11 IVGVANNKSIAYGIAQSCFNQGAT--LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKE 68
+V N+ +A + + F G+ L+F Y N K + P A E+N +YE DV
Sbjct: 140 LVDERNDYYVAVCVLKPGFENGSNQVLSFEY-NPIGNKVIVPFAHEINDTGLYEYDV--- 195
Query: 69 EHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELT 127
+ +SV+ D + V S+ +L ++++ N +M +Y +E T
Sbjct: 196 ---VAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSM---IYKALEFT 248
>pdb|1EV1|1 Chain 1, Echovirus 1
Length = 281
Score = 26.6 bits (57), Expect = 3.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 208 WNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH 251
W E NAP R ++ +GNA S+ G HF AG +
Sbjct: 172 WTEGNAPARMSIPFISIGNA-------YSNFYDGWSHFSQAGVY 208
>pdb|1K42|A Chain A, The Solution Structure Of The Cbm4-2 Carbohydrate Binding
Module From A Thermostable Rhodothermus Marinus
Xylanase.
pdb|1K45|A Chain A, The Solution Structure Of The Cbm4-2 Carbohydrate Binding
Module From A Thermostable Rhodothermus Marinus Xylanase
Length = 168
Score = 26.6 bits (57), Expect = 3.3
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 3/61 (4%)
Query: 12 VGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNS---PYVYELDVSKE 68
V V + Y I GA ++FT N+S ++ R Q++ + P+ +E VS +
Sbjct: 78 VNVRPGVTYTYTIWARAEQDGAVVSFTVGNQSFQEYGRLHEQQITTEWQPFTFEFTVSDQ 137
Query: 69 E 69
E
Sbjct: 138 E 138
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 26.6 bits (57), Expect = 3.3
Identities = 20/85 (23%), Positives = 35/85 (40%), Gaps = 8/85 (9%)
Query: 152 MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEI 211
M Y + K + + +G R+ A + G AS I + +L W+ +
Sbjct: 156 MDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARG-----ASYTIREAAKVLGWDTL 210
Query: 212 NAPLRKNVSLEEVGNAGMYLLSSLS 236
K ++++ GNAG YL +S
Sbjct: 211 KG---KTIAIQGYGNAGYYLAKIMS 232
>pdb|4FAB|H Chain H, 4-4-20 (IgG2akappa) Fab Fragment - Fluorescein (Dianion)
Complex
Length = 216
Score = 25.8 bits (55), Expect = 5.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 27 SCFNQGATLAFTYLN---ESLEKRVRPIAQELNSPYVYE 62
SC G T + ++N +S EK + +AQ N PY YE
Sbjct: 21 SCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYE 59
>pdb|1FLR|H Chain H, 4-4-20 Fab Fragment
Length = 219
Score = 25.8 bits (55), Expect = 5.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 27 SCFNQGATLAFTYLN---ESLEKRVRPIAQELNSPYVYE 62
SC G T + ++N +S EK + +AQ N PY YE
Sbjct: 21 SCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYE 59
>pdb|3TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Val-Trp (Vw)
pdb|1LNA|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Cobalt
Length = 316
Score = 25.4 bits (54), Expect = 7.4
Identities = 15/67 (22%), Positives = 25/67 (36%)
Query: 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLT 142
G +D + H + A + G + + A N A+ +L+E P G V T
Sbjct: 135 GGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYT 194
Query: 143 LSYLGST 149
G +
Sbjct: 195 PGISGDS 201
>pdb|1ESP| Neutral Protease Mutant E144s
Length = 317
Score = 25.4 bits (54), Expect = 7.4
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLT 142
G +D I HS+ A E + + A N A+ +L+E + P G + T
Sbjct: 136 GGIDVIGHSLTHAVTENSSNLIYQNESGALNEAISDIFGTLVEFYDNRNPDWEIGEDIYT 195
>pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate Has An Open
Conformation
pdb|8TLN|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Val-Lys
Dipeptide
pdb|2TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With
N-Phosphoryl-L-Leucinamide (P-Leu-NH2)
pdb|5TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Cbz-Glyp-Leu-Leu
(Zgpll)
pdb|6TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With
Cbz-Glyp-(O)-Leu-Leu (Zgp(O)ll)
pdb|2TLX|A Chain A, Thermolysin (Native)
pdb|1LND|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Zinc
pdb|1LNE|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Cadmium
pdb|1LNF|E Chain E, Thermolysin (E.C.3.4.24.27)
pdb|4TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Cbz-Phep-Leu-Ala
(Zfpla)
pdb|1FJQ|A Chain A, Thermolysin (70% Acetone Soaked Crystals)
pdb|1HYT| Thermolysin (E.C.3.4.24.27) Complexed With Benzylsuccinic Acid
(2(S)-Benzyl-3-Carboxypropionic Acid)
pdb|1LNB|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Iron
pdb|1LNC|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Manganese
pdb|1TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With
N-(1-Carboxy-3-Phenylpropyl)-L-Leucyl-L-Tryptophan
pdb|1FJW|A Chain A, Thermolysin (50 Mm Phenol Soaked)
pdb|7TLI|A Chain A, Thermolysin (90% Isopropanol Soaked Crystals)
pdb|3TLI|A Chain A, Thermolysin (10% Isopropanol Soaked Crystals)
pdb|4TLI|A Chain A, Thermolysin (25% Isopropanol Soaked Crystals)
pdb|2TLI|A Chain A, Thermolysin (5% Isopropanol Soaked Crystals)
pdb|1FJO|A Chain A, Thermolysin (60% Acetone Soaked Crystals)
pdb|1FJ3|A Chain A, Thermolysin (50% Acetone Soaked)
pdb|1QF1|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-
Sulphanylheptanoyl)-Phe-Ala. Parameters For
Zn-Bidentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1FJU|A Chain A, Thermolysin (80% Acetonitrile Soaked Crystals)
pdb|1FJV|A Chain A, Thermolysin (60% Acetonitrile Soaked Crystals)
pdb|1TLI|A Chain A, Thermolysin (2% Isopropanol Soaked Crystals)
pdb|1QF2|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Gly-(5-Phenylproline). Parameters For
Zn- Monodentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1TLX|A Chain A, Thermolysin (Native)
pdb|6TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|5TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|8TLI|A Chain A, Thermolysin (100% Isopropanol Soaked Crystals)
pdb|1FJT|A Chain A, Thermolysin (50% Acetonitrile Soaked Crystals)
pdb|1QF0|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Phe-Tyr. Parameters For Zn-Bidentation
Of Mercaptoacyldipeptides In Metalloendopeptidase
pdb|1TLP|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Phosphoramidon
pdb|4TLN| Thermolysin (E.C.3.4.24.27) Complex With L-Leucyl-Hydroxylamine
pdb|5TLN| Thermolysin (E.C.3.4.24.27) Complex With
Honh-Benzylmalonyl-L-Alanylglycine-P-Nitroanilide
pdb|7TLN| Thermolysin (E.C.3.4.24.27) Complex With Ch2co(N-Oh)leu-Och3
Length = 316
Score = 25.4 bits (54), Expect = 7.4
Identities = 15/67 (22%), Positives = 25/67 (36%)
Query: 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLT 142
G +D + H + A + G + + A N A+ +L+E P G V T
Sbjct: 135 GGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYT 194
Query: 143 LSYLGST 149
G +
Sbjct: 195 PGISGDS 201
>pdb|1THL| Thermolysin (E.C.3.4.24.27) Complexed With A Novel Glutaramide
Derivative, N-(1-(2(R,S)-Carboxy-4-Phenylbutyl)
Cyclopentylcarbonyl)-(S)-Tryptophan
Length = 319
Score = 25.4 bits (54), Expect = 7.4
Identities = 15/67 (22%), Positives = 25/67 (36%)
Query: 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLT 142
G +D + H + A + G + + A N A+ +L+E P G V T
Sbjct: 135 GGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYT 194
Query: 143 LSYLGST 149
G +
Sbjct: 195 PGISGDS 201
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 25.0 bits (53), Expect = 9.7
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 163 AALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSL- 221
AAL++++ L V V L A S I+ L+W N N+SL
Sbjct: 71 AALDNSIGVLGVAPSAELYAVKVLGAS-----GSGAISSIAQGLEWAGNNGMHVANLSLG 125
Query: 222 --------EEVGNA----GMYLLSSLSSGVSGEVHFVDAGYHVMGMGAVEEKDNKAT 266
E+ N+ G+ ++++ + +G + + + M +GA ++ +N+A+
Sbjct: 126 SPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRAS 182
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,465,100
Number of Sequences: 13198
Number of extensions: 54963
Number of successful extensions: 229
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 44
length of query: 275
length of database: 2,899,336
effective HSP length: 87
effective length of query: 188
effective length of database: 1,751,110
effective search space: 329208680
effective search space used: 329208680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)