BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644826|ref|NP_206996.1| S-adenosylmethionine
synthetase 2 (metX) [Helicobacter pylori 26695]
(385 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FUG|A Chain A, S-Adenosylmethionine Synthetase >gi|182... 463 e-131
pdb|1XRB| S-Adenosylmethionine Synthetase (Mat, Atp: L-Me... 458 e-130
pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexe... 387 e-108
pdb|1DAQ|A Chain A, Solution Structure Of The Type I Docker... 27 5.1
pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate ... 26 6.6
pdb|1DR0|A Chain A, Structure Of Modified 3-Isopropylmalate... 26 6.6
pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate... 26 6.6
pdb|1OSJ|A Chain A, Structure Of 3-Isopropylmalate Dehydrog... 26 6.6
pdb|1MDA|H Chain H, Methylamine Dehydrogenase (E.C.1.4.99.3... 26 8.7
>pdb|1FUG|A Chain A, S-Adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-Adenosylmethionine Synthetase
pdb|1MXA| S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB| S-Adenosylmethionine Synthetase With Adp
pdb|1MXC| S-Adenosylmethionine Synthetase With 8-Br-Adp
pdb|1XRA| Mol_id: 1; Molecule: S-Adenosylmethionine Synthetase; Chain: Null;
Synonym: Mat, Atp:l-Methionine S-Adenosyltransferase;
Ec: 2.5.1.6; Biological_unit: Homotetramer
pdb|1XRC| Mol_id: 1; Molecule: S-Adenosylmethionine Synthetase; Chain: Null;
Synonym: Mat, Atp:l-Methionine S-Adenosyltransferase;
Ec: 2.5.1.6; Other_details: Crystallized With Two Co
Ions Instead Of Mg Ions; Biological_unit: Homotetramer
Length = 383
Score = 463 bits (1192), Expect = e-131
Identities = 233/376 (61%), Positives = 285/376 (74%), Gaps = 3/376 (0%)
Query: 6 LFTSESVTEGHPDKMADQISDAVLDYIIERDQKAKVACETLVSNGFCMITGELKTSVYAP 65
LFTSESV+EGHPDK+ADQISDAVLD I+E+D KA+VACET V G ++ GE+ TS +
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVD 63
Query: 66 MQEIAREVVKKIGYTDALYGFDYRSAAVLNGVGEQSPDINQGVDREDG-EIGAGDQGLMF 124
++EI R V++IGY + GFD S AVL+ +G+QSPDINQGVDR D E GAGDQGLMF
Sbjct: 64 IEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQGLMF 123
Query: 125 GYACKETETLMPLPIHLAHQLTFALAQKRKDNTLPFLRPDGKSQVSVRYENNKPVSIDTI 184
GYA ET+ LMP PI AH+L A+ RK+ TLP+LRPD KSQV+ +Y++ K V ID +
Sbjct: 124 GYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVGIDAV 183
Query: 185 VISTQHSPEVSQKHLKEAVIEEIVYKVLSKEYLHDNIKFFVNPTGKFVIGGPQGDAGLTG 244
V+STQHS E+ QK L+EAV+EEI+ +L E+L KFF+NPTG+FVIGGP GD GLTG
Sbjct: 184 VLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLTG 243
Query: 245 RKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVCDKATVQLAYAIG 304
RKIIVDTYGG HGGGAFSGKDPSKVDRSAAYAARYVAKN+VA+G+ D+ +Q++YAIG
Sbjct: 244 RKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIG 303
Query: 305 VIEPVSIYVNTHNTSKYSSAELEKCVKSVFKLTPKGIIESLDLLRPIYSLTSAYGHFGRE 364
V EP SI V T T K S +L V+ F L P G+I+ LDLL PIY T+AYGHFGR
Sbjct: 304 VAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGR- 362
Query: 365 LEEFTWEKTNKAEEIK 380
E F WEKT+KA+ ++
Sbjct: 363 -EHFPWEKTDKAQLLR 377
>pdb|1XRB| S-Adenosylmethionine Synthetase (Mat, Atp: L-Methionine
S-Adenosyltransferase, E.C.2.5.1.6) In Which Met
Residues Are Replaced With Selenomethionine Residues
(Mse)
Length = 383
Score = 458 bits (1178), Expect = e-130
Identities = 231/376 (61%), Positives = 282/376 (74%), Gaps = 3/376 (0%)
Query: 6 LFTSESVTEGHPDKMADQISDAVLDYIIERDQKAKVACETLVSNGFCMITGELKTSVYAP 65
LFTSESV+EGHPDK+ADQISDAVLD I+E+D KA+VACET V G ++ GE+ TS +
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGXVLVGGEITTSAWVD 63
Query: 66 MQEIAREVVKKIGYTDALYGFDYRSAAVLNGVGEQSPDINQGVDREDG-EIGAGDQGLMF 124
++EI R V++IGY + GFD S AVL+ +G+QSPDINQGVDR D E GAGDQGL F
Sbjct: 64 IEEITRNTVREIGYVHSDXGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQGLXF 123
Query: 125 GYACKETETLMPLPIHLAHQLTFALAQKRKDNTLPFLRPDGKSQVSVRYENNKPVSIDTI 184
GYA ET+ L P PI AH+L A+ RK+ TLP+LRPD KSQV+ +Y++ K V ID +
Sbjct: 124 GYATNETDVLXPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVGIDAV 183
Query: 185 VISTQHSPEVSQKHLKEAVIEEIVYKVLSKEYLHDNIKFFVNPTGKFVIGGPQGDAGLTG 244
V+STQHS E+ QK L+EAV EEI+ +L E+L KFF+NPTG+FVIGGP GD GLTG
Sbjct: 184 VLSTQHSEEIDQKSLQEAVXEEIIKPILPAEWLTSATKFFINPTGRFVIGGPXGDCGLTG 243
Query: 245 RKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVCDKATVQLAYAIG 304
RKIIVDTYGG HGGGAFSGKDPSKVDRSAAYAARYVAKN+VA+G+ D+ +Q++YAIG
Sbjct: 244 RKIIVDTYGGXARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIG 303
Query: 305 VIEPVSIYVNTHNTSKYSSAELEKCVKSVFKLTPKGIIESLDLLRPIYSLTSAYGHFGRE 364
V EP SI V T T K S +L V+ F L P G+I+ LDLL PIY T+AYGHFGR
Sbjct: 304 VAEPTSIXVETFGTEKVPSEQLTLLVREFFDLRPYGLIQXLDLLHPIYKETAAYGHFGR- 362
Query: 365 LEEFTWEKTNKAEEIK 380
E F WEKT+KA+ ++
Sbjct: 363 -EHFPWEKTDKAQLLR 377
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
Length = 396
Score = 387 bits (993), Expect = e-108
Identities = 198/378 (52%), Positives = 266/378 (69%), Gaps = 8/378 (2%)
Query: 4 SFLFTSESVTEGHPDKMADQISDAVLDYIIERDQKAKVACETLVSNGFCMITGELKTSVY 63
+F+FTSESV EGHPDK+ DQISDAVLD +++D AKVACET+ G ++ GE+ +
Sbjct: 18 AFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAM 77
Query: 64 APMQEIAREVVKKIGYTDALYGFDYRSAAVLNGVGEQSPDINQGV--DREDGEIGAGDQG 121
Q + R+ +K IGY D+ GFD+++ VL + +QSPDI Q V DR + ++GAGDQG
Sbjct: 78 IDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQG 137
Query: 122 LMFGYACKETETLMPLPIHLAHQLTFALAQKRKDNTLPFLRPDGKSQVSVRYENNK---- 177
LMFGYA ETE MPL I LAH+L +A R+ LP+LRPD K+QV+V+Y +
Sbjct: 138 LMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVI 197
Query: 178 PVSIDTIVISTQHSPEVSQKHLKEAVIEEIVYKVLSKEYLHDNIKFFVNPTGKFVIGGPQ 237
PV + TIVIS QH+ +++ + ++EA+ E+++ V+ +YL ++ + + P+G+FVIGGPQ
Sbjct: 198 PVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQ 257
Query: 238 GDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVCDKATV 297
GDAG+TGRKIIVDTYGG HGGGAFSGKD +KVDRSAAYAAR+VAK+LV +G+C + V
Sbjct: 258 GDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLV 317
Query: 298 QLAYAIGVIEPVSIYVNTHNTSKYSSAELEKCVKSVFKLTPKGIIESLDLLRPIYSLTSA 357
Q++YAIGV EP+SI + T+ TSK + EL + V F L P I+ LDL +PIY T+
Sbjct: 318 QVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTAC 377
Query: 358 YGHFGRELEEFTWEKTNK 375
YGHFGR EF WE K
Sbjct: 378 YGHFGR--SEFPWEVPKK 393
>pdb|1DAQ|A Chain A, Solution Structure Of The Type I Dockerin Domain From The
Clostridium Thermocellum Cellulosome (Minimized Average
Structure)
pdb|1DAV|A Chain A, Solution Structure Of The Type I Dockerin Domain From The
Clostridium Thermocellum Cellulosome (20 Structures)
Length = 71
Score = 26.6 bits (57), Expect = 5.1
Identities = 20/61 (32%), Positives = 30/61 (48%), Gaps = 10/61 (16%)
Query: 76 KIGYTDA--LYGFDYRSAAVLNGVGEQSPDINQGVDREDGEIGAGDQGLMFGYACKETET 133
K+ TDA L + RS +N + D+N EDG + + D G++ Y KE +T
Sbjct: 14 KVNSTDAVALKRYVLRSGISIN---TDNADLN-----EDGRVNSTDLGILKRYILKEIDT 65
Query: 134 L 134
L
Sbjct: 66 L 66
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C-Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C-Terminus, Hd711
Length = 349
Score = 26.2 bits (56), Expect = 6.6
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 5/108 (4%)
Query: 233 IGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVC 292
+GGP+ D GL RKI +T S F+ P+KV + K +A GV
Sbjct: 72 VGGPKWD-GLP-RKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL--KEEIARGVD 127
Query: 293 DKATVQLAYAIGVIEPVSIY-VNTHNTSKYSSAELEKCVKSVFKLTPK 339
+L I EP + NT +YS E+E+ + F+L K
Sbjct: 128 VLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARK 175
>pdb|1DR0|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C-Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C-Terminus, Hd708
Length = 346
Score = 26.2 bits (56), Expect = 6.6
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 5/108 (4%)
Query: 233 IGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVC 292
+GGP+ D GL RKI +T S F+ P+KV + K +A GV
Sbjct: 72 VGGPKWD-GLP-RKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL--KEEIARGVD 127
Query: 293 DKATVQLAYAIGVIEPVSIY-VNTHNTSKYSSAELEKCVKSVFKLTPK 339
+L I EP + NT +YS E+E+ + F+L K
Sbjct: 128 VLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARK 175
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C-Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C-Terminus, Hd177
Length = 344
Score = 26.2 bits (56), Expect = 6.6
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 5/108 (4%)
Query: 233 IGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVC 292
+GGP+ D GL RKI +T S F+ P+KV + K +A GV
Sbjct: 72 VGGPKWD-GLP-RKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL--KEEIARGVD 127
Query: 293 DKATVQLAYAIGVIEPVSIY-VNTHNTSKYSSAELEKCVKSVFKLTPK 339
+L I EP + NT +YS E+E+ + F+L K
Sbjct: 128 VLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARK 175
>pdb|1OSJ|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
Length = 345
Score = 26.2 bits (56), Expect = 6.6
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 5/108 (4%)
Query: 233 IGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVC 292
+GGP+ D GL RKI +T S F+ P+KV + K +A GV
Sbjct: 72 VGGPKWD-GLP-RKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL--KEEIARGVD 127
Query: 293 DKATVQLAYAIGVIEPVSIY-VNTHNTSKYSSAELEKCVKSVFKLTPK 339
+L I EP + NT +YS E+E+ + F+L K
Sbjct: 128 VLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARK 175
>pdb|1MDA|H Chain H, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin
pdb|1MDA|J Chain J, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin
Length = 368
Score = 25.8 bits (55), Expect = 8.7
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 253 GGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVCDKATVQLAYAIGVIEPVSIY 312
G SC HG GA S + S + A +A +N V+ C V L +++G +S+
Sbjct: 20 GSSCDHGPGAISRR--SHITLPAYFAG--TTENWVSCAGCG---VTLGHSLGAF--LSLA 70
Query: 313 VNTHNTSKYSSA 324
V H+ S ++ A
Sbjct: 71 VAGHSGSDFALA 82
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,287,615
Number of Sequences: 13198
Number of extensions: 96575
Number of successful extensions: 274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 9
length of query: 385
length of database: 2,899,336
effective HSP length: 90
effective length of query: 295
effective length of database: 1,711,516
effective search space: 504897220
effective search space used: 504897220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)