BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644827|ref|NP_206997.1| nucleoside diphosphate
kinase (ndk) [Helicobacter pylori 26695]
(137 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1NHK|R Chain R, Nucleoside Diphosphate Kinase (E.C.2.7.... 180 6e-47
pdb|1NPK| Nucleoside Diphosphate Kinase (E.C.2.7.4.6) 125 1e-30
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate... 125 1e-30
pdb|1NCL| Thermal Stability Of Hexameric And Tetrameric N... 125 2e-30
pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nu... 123 7e-30
pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside D... 122 1e-29
pdb|1LEO| P100s Nucleoside Diphosphate Kinase 122 1e-29
pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside D... 122 1e-29
pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nu... 122 2e-29
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Dipho... 122 2e-29
pdb|1NDK| Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Mut... 121 2e-29
pdb|1NSQ|A Chain A, Nucleoside Diphosphate Kinase (E.C.2.7.... 120 4e-29
pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In... 118 3e-28
pdb|1NSK|L Chain L, Mol_id: 1; Molecule: Nucleoside Diphosp... 116 8e-28
pdb|1NUE|A Chain A, Nucleoside Triphosphate, Nucleoside Dip... 116 8e-28
pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A... 115 1e-27
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B... 115 2e-27
pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B... 115 2e-27
pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside D... 112 2e-26
pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4 >... 111 3e-26
pdb|1CKR|A Chain A, High Resolution Solution Structure Of T... 26 1.4
pdb|1GC5|A Chain A, Crystal Structure Of A Novel Adp-Depend... 25 4.1
pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In... 24 7.0
pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests... 24 7.0
pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In... 23 9.2
>pdb|1NHK|R Chain R, Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Complexed With
5'-Cyclic Adenosine Monophosphate
pdb|2NCK|R Chain R, Nucleoside Diphosphate Kinase (E.C.2.7.4.6) (Tetragonal
Form)
pdb|1NHK|L Chain L, Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Complexed With
5'-Cyclic Adenosine Monophosphate
pdb|1NLK|L Chain L, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|1NLK|R Chain R, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|2NCK|L Chain L, Nucleoside Diphosphate Kinase (E.C.2.7.4.6) (Tetragonal
Form)
Length = 144
Score = 180 bits (456), Expect = 6e-47
Identities = 88/135 (65%), Positives = 108/135 (79%)
Query: 3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDL 62
+RTLSIIKPD L+K V+GKII RFE GL+ VA++ HLS AE FYA+H+ RPFFKDL
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 63 IEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLE 122
++FM+SGPVV+MVLEG++AV NRD+MGAT+P A +GTIR DFA SID N VHGSDSLE
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLE 122
Query: 123 NAHNEIAFFFAARDL 137
NA EIA+FF ++
Sbjct: 123 NAKIEIAYFFRETEI 137
>pdb|1NPK| Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
Length = 154
Score = 125 bits (315), Expect = 1e-30
Identities = 62/136 (45%), Positives = 89/136 (64%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 7 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 66
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + N +HGSDS+
Sbjct: 67 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSV 126
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 127 ESANREIALWFKPEEL 142
>pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate KinaseALPHA-
Borano(Rp)-Tdp.Mg Complex
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate KinaseALPHA-
Borano(Rp)-Tdp.Mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate KinaseALPHA-
Borano(Rp)-Tdp.Mg Complex
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|1NDC| Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Complexed With
2'-Deoxythymidine Diphosphate
pdb|1NSP| Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|1NDP|A Chain A, Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Complexed With
Adp
pdb|1NDP|B Chain B, Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Complexed With
Adp
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
Length = 155
Score = 125 bits (315), Expect = 1e-30
Identities = 62/136 (45%), Positives = 89/136 (64%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + N +HGSDS+
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSV 127
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 128 ESANREIALWFKPEEL 143
>pdb|1NCL| Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 125 bits (314), Expect = 2e-30
Identities = 62/136 (45%), Positives = 89/136 (64%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 62
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + N +HGSDS+
Sbjct: 63 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGDFGVDVGRNIIHGSDSV 122
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 123 ESANREIALWFKPEEL 138
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 123 bits (309), Expect = 7e-30
Identities = 61/136 (44%), Positives = 88/136 (63%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT + PD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 8 KERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + N +HGSDS+
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSV 127
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 128 ESANREIALWFKPEEL 143
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 122 bits (307), Expect = 1e-29
Identities = 61/136 (44%), Positives = 88/136 (63%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + +HGSDS+
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRAIIHGSDSV 127
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 128 ESANREIALWFKPEEL 143
>pdb|1LEO| P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 122 bits (307), Expect = 1e-29
Identities = 61/136 (44%), Positives = 88/136 (63%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 62
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+ + G+IR DF + N +HGSDS+
Sbjct: 63 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSIRGDFGVDVGRNIIHGSDSV 122
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 123 ESANREIALWFKPEEL 138
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 122 bits (306), Expect = 1e-29
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 1 MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFK 60
M +RTL +IKPD ++++++G+II R E GL + A++ +S + A YA H +PFF
Sbjct: 1 MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFG 60
Query: 61 DLIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDP-KLAQKGTIRADFAESIDANAVHGSD 119
L+EF+ SGPVV ++EG A+A R L G TDP + A GTIR DFA N VHGSD
Sbjct: 61 SLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSD 120
Query: 120 SLENAHNEIAFFF 132
S E+A EIA +F
Sbjct: 121 SAESAQREIALWF 133
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 122 bits (305), Expect = 2e-29
Identities = 61/136 (44%), Positives = 88/136 (63%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + N + GSDS+
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSV 127
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 128 ESANREIALWFKPEEL 143
>pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
Length = 155
Score = 122 bits (305), Expect = 2e-29
Identities = 61/136 (44%), Positives = 88/136 (63%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + N + GSDS+
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSV 127
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 128 ESANREIALWFKPEEL 143
>pdb|1NDK| Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Mutant With His 122
Replaced By Cys (H122c)
Length = 155
Score = 121 bits (304), Expect = 2e-29
Identities = 61/136 (44%), Positives = 88/136 (63%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERPFF
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + N + GSDS+
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIICGSDSV 127
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 128 ESANREIALWFKPEEL 143
>pdb|1NSQ|A Chain A, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|1NSQ|B Chain B, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|1NSQ|C Chain C, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|1NDL|A Chain A, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|1NDL|B Chain B, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
pdb|1NDL|C Chain C, Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
Length = 153
Score = 120 bits (302), Expect = 4e-29
Identities = 61/136 (44%), Positives = 88/136 (63%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT ++KPD +++ +VGKII+RFE G ++VA+K S + E YA RPFF
Sbjct: 5 KERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPG 64
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ +M SGPVV MV EG + V R ++GAT+P + GTIR DF + N +HGSD++
Sbjct: 65 LVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAV 124
Query: 122 ENAHNEIAFFFAARDL 137
E+A EIA +F ++L
Sbjct: 125 ESAEKEIALWFNEKEL 140
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 118 bits (295), Expect = 3e-28
Identities = 59/136 (43%), Positives = 88/136 (64%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
K+RT +KPD + + +VG+II R+E G +V +K+L + AE+ YA H+ERP+F
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPWFGG 67
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
L+ F+ SGPVV MV EGK VA R ++G T+P + G+IR DF + + + GSDS+
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRSIIGGSDSV 127
Query: 122 ENAHNEIAFFFAARDL 137
E+A+ EIA +F +L
Sbjct: 128 ESANREIALWFKPEEL 143
>pdb|1NSK|L Chain L, Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain:
R, L, T, U, N, O; Ec: 2.7.4.6; Engineered: Yes
pdb|1NSK|N Chain N, Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain:
R, L, T, U, N, O; Ec: 2.7.4.6; Engineered: Yes
pdb|1NSK|O Chain O, Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain:
R, L, T, U, N, O; Ec: 2.7.4.6; Engineered: Yes
pdb|1NSK|R Chain R, Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain:
R, L, T, U, N, O; Ec: 2.7.4.6; Engineered: Yes
pdb|1NSK|T Chain T, Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain:
R, L, T, U, N, O; Ec: 2.7.4.6; Engineered: Yes
pdb|1NSK|U Chain U, Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain:
R, L, T, U, N, O; Ec: 2.7.4.6; Engineered: Yes
Length = 152
Score = 116 bits (291), Expect = 8e-28
Identities = 58/135 (42%), Positives = 86/135 (62%)
Query: 3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDL 62
+RT IKPD +++ +VG+II RFE G +VAMK L S + + Y ++RPFF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 63 IEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLE 122
+++M SGPVV MV EG + V R ++G T+P ++ GTIR DF + N +HGSDS++
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 124
Query: 123 NAHNEIAFFFAARDL 137
+A EI+ +F +L
Sbjct: 125 SAEKEISLWFKPEEL 139
>pdb|1NUE|A Chain A, Nucleoside Triphosphate, Nucleoside Diphosphate Mol_id: 1;
Molecule: Nucleoside Diphosphate Kinase; Chain: A, B, C,
D, E, F; Ec: 2.7.4.6
pdb|1NUE|B Chain B, Nucleoside Triphosphate, Nucleoside Diphosphate Mol_id: 1;
Molecule: Nucleoside Diphosphate Kinase; Chain: A, B, C,
D, E, F; Ec: 2.7.4.6
pdb|1NUE|C Chain C, Nucleoside Triphosphate, Nucleoside Diphosphate Mol_id: 1;
Molecule: Nucleoside Diphosphate Kinase; Chain: A, B, C,
D, E, F; Ec: 2.7.4.6
pdb|1NUE|D Chain D, Nucleoside Triphosphate, Nucleoside Diphosphate Mol_id: 1;
Molecule: Nucleoside Diphosphate Kinase; Chain: A, B, C,
D, E, F; Ec: 2.7.4.6
pdb|1NUE|E Chain E, Nucleoside Triphosphate, Nucleoside Diphosphate Mol_id: 1;
Molecule: Nucleoside Diphosphate Kinase; Chain: A, B, C,
D, E, F; Ec: 2.7.4.6
pdb|1NUE|F Chain F, Nucleoside Triphosphate, Nucleoside Diphosphate Mol_id: 1;
Molecule: Nucleoside Diphosphate Kinase; Chain: A, B, C,
D, E, F; Ec: 2.7.4.6
Length = 151
Score = 116 bits (291), Expect = 8e-28
Identities = 58/135 (42%), Positives = 86/135 (62%)
Query: 3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDL 62
+RT IKPD +++ +VG+II RFE G +VAMK L S + + Y ++RPFF L
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 63 IEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLE 122
+++M SGPVV MV EG + V R ++G T+P ++ GTIR DF + N +HGSDS++
Sbjct: 64 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 123
Query: 123 NAHNEIAFFFAARDL 137
+A EI+ +F +L
Sbjct: 124 SAEKEISLWFKPEEL 138
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 115 bits (289), Expect = 1e-27
Identities = 58/135 (42%), Positives = 85/135 (62%)
Query: 3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDL 62
+RT IKPD +++ ++G+II RFE G +VAMK + S + Y ++RPFF L
Sbjct: 5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 64
Query: 63 IEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLE 122
+++M SGPVV MV EG + V R ++G T+P ++ GTIR DF + N +HGSDS+E
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124
Query: 123 NAHNEIAFFFAARDL 137
+A EIA +F +L
Sbjct: 125 SAEKEIALWFHPEEL 139
>pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 152
Score = 115 bits (288), Expect = 2e-27
Identities = 58/135 (42%), Positives = 85/135 (62%)
Query: 3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDL 62
+RT IKPD +++ ++G+II RFE G +VAMK + S + Y ++RPFF L
Sbjct: 5 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 64
Query: 63 IEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLE 122
+++M SGPVV MV EG + V R ++G T+P ++ GTIR DF + N +HGSDS+E
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124
Query: 123 NAHNEIAFFFAARDL 137
+A EIA +F +L
Sbjct: 125 SAEKEIALWFRPEEL 139
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 115 bits (288), Expect = 2e-27
Identities = 58/135 (42%), Positives = 85/135 (62%)
Query: 3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDL 62
+RT IKPD +++ ++G+II RFE G +VAMK + S + Y ++RPFF L
Sbjct: 4 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 63
Query: 63 IEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLE 122
+++M SGPVV MV EG + V R ++G T+P ++ GTIR DF + N +HGSDS+E
Sbjct: 64 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 123
Query: 123 NAHNEIAFFFAARDL 137
+A EIA +F +L
Sbjct: 124 SAEKEIALWFRPEEL 138
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
Length = 152
Score = 112 bits (280), Expect = 2e-26
Identities = 56/135 (41%), Positives = 83/135 (61%)
Query: 3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDL 62
+RT IKPD +++ +VG+II RFE G +V +K + S + Y ++RPFF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 64
Query: 63 IEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLE 122
+++M SGPVV MV EG + V R ++G T+P ++ GTIR DF + N +HGSDS+E
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124
Query: 123 NAHNEIAFFFAARDL 137
+A EI +F +L
Sbjct: 125 SAEKEIGLWFHPEEL 139
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 111 bits (278), Expect = 3e-26
Identities = 57/136 (41%), Positives = 80/136 (57%)
Query: 2 KQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKD 61
++RTL +KPD +++++VG +I RFE G +V MK L Y R +PF+
Sbjct: 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 83
Query: 62 LIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSL 121
LI +M SGPVV MV EG + V +R ++G TD A GTIR DF+ I N +H SDS+
Sbjct: 84 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSV 143
Query: 122 ENAHNEIAFFFAARDL 137
E A EI +F + +L
Sbjct: 144 EGAQREIQLWFQSSEL 159
>pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
pdb|7HSC|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
Length = 159
Score = 26.2 bits (56), Expect = 1.4
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 3/48 (6%)
Query: 71 VVVMVLEGKDAVAKNRDLMG---ATDPKLAQKGTIRADFAESIDANAV 115
V++ V EG+ A+ K+ +L+G T A +G + + IDAN +
Sbjct: 54 VLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI 101
>pdb|1GC5|A Chain A, Crystal Structure Of A Novel Adp-Dependent Glucokinase
From Thermococcus Litoralis
Length = 467
Score = 24.6 bits (52), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 64 EFMVSGPVVVMVLEG--------KDAVAKNRDLM 89
E V GP+ V V EG KDA+A+ +L+
Sbjct: 150 ELFVDGPIYVPVFEGNKLKLVHPKDAIAEEEELI 183
>pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary Complex
With Substrate Phosphoenol Pyruvate
Length = 284
Score = 23.9 bits (50), Expect = 7.0
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 14/112 (12%)
Query: 6 LSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEF 65
+++ KP + +G I+D+F+ G E V + NF + +L+
Sbjct: 135 INVKKPQFVSPGQMGNIVDKFKEGGNEKVIL------CDRGANF--------GYDNLVVD 180
Query: 66 MVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHG 117
M+ ++ V + + DP +A G RA AE A G
Sbjct: 181 MLGFSIMKKVSGNSPVIFDVTHALQCRDPFVAASGGRRAQVAELARAGMAVG 232
>pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
Is Achieved
Length = 482
Score = 23.9 bits (50), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 94 PKLAQKGTIRADFAESIDANAVHGSDSLE 122
P LAQ T+R + A+ + N H D+L+
Sbjct: 307 PVLAQANTLRPEDADRLGINRQHCLDNLK 335
>pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary
Complexes With The Mechanism-Based Inhibitor
pdb|1D9E|A Chain A, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|B Chain B, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|C Chain C, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|D Chain D, Structure Of E. Coli Kdo8p Synthase
pdb|1GG0|A Chain A, Crystal Structure Analysis Of Kdop Synthase At 3.0 A
Length = 284
Score = 23.5 bits (49), Expect = 9.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 6 LSIIKPDALKKKVVGKIIDRFESNGLEVVAM 36
+++ KP + +G I+D+F+ G E V +
Sbjct: 135 INVKKPQFVSPGQMGNIVDKFKEGGNEKVIL 165
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 689,437
Number of Sequences: 13198
Number of extensions: 23380
Number of successful extensions: 88
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 25
length of query: 137
length of database: 2,899,336
effective HSP length: 79
effective length of query: 58
effective length of database: 1,856,694
effective search space: 107688252
effective search space used: 107688252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)