BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644828|ref|NP_206998.1| hypothetical protein
[Helicobacter pylori 26695]
         (118 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DJ2|A  Chain A, Structures Of Adenylosuccinate Syntheta...    29  0.12
pdb|1A6D|B  Chain B, Thermosome From T. Acidophilum >gi|4699...    23  6.6

>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
           Aestivum And Arabidopsis Thaliana
 pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
           Aestivum And Arabidopsis Thaliana
          Length = 443

 Score = 29.3 bits (64), Expect = 0.12
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 76  DTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD 118
           DT  Q LD    D    F GF    E+LR EVE+ K    YAD
Sbjct: 174 DTLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYK---RYAD 213



>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
 pdb|1A6E|B Chain B, Thermosome - Mg-Adp-Alf3 Complex
          Length = 543

 Score = 23.5 bits (49), Expect = 6.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 82  LDFDNLDVIESFNGFIDLSEIL 103
           +DFDN+ V++   G ID ++++
Sbjct: 193 VDFDNIQVVKKQGGAIDDTQLI 214



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,121
Number of Sequences: 13198
Number of extensions: 21146
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 2
length of query: 118
length of database: 2,899,336
effective HSP length: 77
effective length of query: 41
effective length of database: 1,883,090
effective search space: 77206690
effective search space used: 77206690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)