BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644831|ref|NP_207001.1| beta-ketoacyl-acyl carrier
protein synthase III (fabH) [Helicobacter pylori 26695]
(331 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp ... 256 3e-69
pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active ... 249 2e-67
pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp ... 248 7e-67
pdb|1HZP|A Chain A, Crystal Structure Of The Mycobacterium ... 193 3e-50
pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacteriu... 193 3e-50
pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexe... 44 3e-05
pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexe... 42 7e-05
pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexe... 41 2e-04
pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant 41 2e-04
pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa 41 2e-04
pdb|1I89|A Chain A, Chalcone Synthase (G256l) >gi|17943401|... 41 2e-04
pdb|1I88|A Chain A, Chalcone Synthase (G256v) >gi|17943403|... 41 2e-04
pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coe... 41 2e-04
pdb|1I8B|A Chain A, Chalcone Synthase (G256f) >gi|17943399|... 41 2e-04
pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant) >gi|72... 38 0.002
pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexe... 38 0.002
pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybr... 37 0.004
pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-... 29 0.85
pdb|1GR8|A Chain A, The Crystal Structure Of Malonamidase E... 28 1.9
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 27 3.2
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 27 3.2
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 27 3.2
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 27 3.2
pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia ... 26 7.2
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase F... 25 9.4
>pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HND|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii-Coa
Complex
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
Length = 317
Score = 256 bits (653), Expect = 3e-69
Identities = 143/325 (44%), Positives = 195/325 (60%), Gaps = 9/325 (2%)
Query: 4 YASLKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKERRFANDEEKSSDLGVIAAKQ 63
Y + ++P + NA+ ++ +DTSDEWI RTGI+ER A E S +G AA +
Sbjct: 2 YTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATR 61
Query: 64 AIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLGIENKPAFDISAACTGFIYLLS 123
AIE A + I L+VVAT S A PS AC + + LGI+ PAFD++AAC GF Y LS
Sbjct: 62 AIEMAGIEKDQIGLIVVATTSATH-AFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALS 120
Query: 124 VAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKESILDVQ 183
VA YV+SG + L+VG++ + D DRGT I+FGDGAGA V+ ++ + I+
Sbjct: 121 VADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE--EPGIISTH 178
Query: 184 ISANGNFSNYLYTPRTLKPTPFNAKEEASEPFLCMKGNEVFKLAVKTLLKDVEMILEKNA 243
+ A+G++ L P + P N+ L M GNEVFK+AV L V+ L N
Sbjct: 179 LHADGSYGELLTLPNADRVNPENSIH------LTMAGNEVFKVAVTELAHIVDETLAANN 232
Query: 244 LKPEDVRLFIPHQANFRIIQAVREHLDFKDEQVVLTVHKYGNTSAASIPMAMGEAYEEGR 303
L + +PHQAN RII A + L + VV+T+ ++GNTSAAS+P A+ EA +GR
Sbjct: 233 LDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGR 292
Query: 304 LKKGDLMLLDAFGGGLTWGSALVYF 328
+K G L+LL+AFGGG TWGSALV F
Sbjct: 293 IKPGQLVLLEAFGGGFTWGSALVRF 317
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 249 bits (637), Expect = 2e-67
Identities = 141/325 (43%), Positives = 192/325 (58%), Gaps = 9/325 (2%)
Query: 4 YASLKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKERRFANDEEKSSDLGVIAAKQ 63
Y + ++P + NA+ ++ +DTSDEWI RTGI+ER A E S G AA +
Sbjct: 2 YTKIIGTGSYLPEQVRTNADLEKXVDTSDEWIVTRTGIRERHIAAPNETVSTXGFEAATR 61
Query: 64 AIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLGIENKPAFDISAACTGFIYLLS 123
AIE A + I L+VVAT S A PS AC + + LGI+ PAFD++AAC GF Y LS
Sbjct: 62 AIEXAGIEKDQIGLIVVATTSATH-AFPSAACQIQSXLGIKGCPAFDVAAACAGFTYALS 120
Query: 124 VAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKESILDVQ 183
VA YV+SG + L+VG++ + D DRGT I+FGDGAGA V+ ++ + I+
Sbjct: 121 VADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE--EPGIISTH 178
Query: 184 ISANGNFSNYLYTPRTLKPTPFNAKEEASEPFLCMKGNEVFKLAVKTLLKDVEMILEKNA 243
+ A+G++ L P + P N+ L GNEVFK+AV L V+ L N
Sbjct: 179 LHADGSYGELLTLPNADRVNPENSIH------LTXAGNEVFKVAVTELAHIVDETLAANN 232
Query: 244 LKPEDVRLFIPHQANFRIIQAVREHLDFKDEQVVLTVHKYGNTSAASIPMAMGEAYEEGR 303
+ +PHQAN RII A + L + VV+T+ ++GNTSAAS+P A+ EA +GR
Sbjct: 233 NDRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVTLDRHGNTSAASVPCALDEAVRDGR 292
Query: 304 LKKGDLMLLDAFGGGLTWGSALVYF 328
+K G L+LL+AFGGG TWGSALV F
Sbjct: 293 IKPGQLVLLEAFGGGFTWGSALVRF 317
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 248 bits (633), Expect = 7e-67
Identities = 141/325 (43%), Positives = 192/325 (58%), Gaps = 9/325 (2%)
Query: 4 YASLKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKERRFANDEEKSSDLGVIAAKQ 63
Y + ++P + NA+ ++ +DTSDEWI RTGI+ER A E S G AA +
Sbjct: 2 YTKIIGTGSYLPEQVRTNADLEKXVDTSDEWIVTRTGIRERHIAAPNETVSTXGFEAATR 61
Query: 64 AIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLGIENKPAFDISAACTGFIYLLS 123
AIE A + I L+VVAT S A PS AC + + LGI+ PAFD++AA GF Y LS
Sbjct: 62 AIEXAGIEKDQIGLIVVATTSATH-AFPSAACQIQSXLGIKGCPAFDVAAAXAGFTYALS 120
Query: 124 VAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKESILDVQ 183
VA YV+SG + L+VG++ + D DRGT I+FGDGAGA V+ ++ + I+
Sbjct: 121 VADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE--EPGIISTH 178
Query: 184 ISANGNFSNYLYTPRTLKPTPFNAKEEASEPFLCMKGNEVFKLAVKTLLKDVEMILEKNA 243
+ A+G++ L P + P N+ L GNEVFK+AV L V+ L N
Sbjct: 179 LHADGSYGELLTLPNADRVNPENSIH------LTXAGNEVFKVAVTELAHIVDETLAANN 232
Query: 244 LKPEDVRLFIPHQANFRIIQAVREHLDFKDEQVVLTVHKYGNTSAASIPMAMGEAYEEGR 303
L + +PHQAN RII A + L + VV+T+ ++GNTSAAS+P A+ EA +GR
Sbjct: 233 LDRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVTLDRHGNTSAASVPCALDEAVRDGR 292
Query: 304 LKKGDLMLLDAFGGGLTWGSALVYF 328
+K G L+LL+AFGGG TWGSALV F
Sbjct: 293 IKPGQLVLLEAFGGGFTWGSALVRF 317
>pdb|1HZP|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Beta-
Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Beta-
Ketoacyl-Acyl Carrier Protein Synthase Iii
Length = 335
Score = 193 bits (490), Expect = 3e-50
Identities = 115/321 (35%), Positives = 174/321 (53%), Gaps = 6/321 (1%)
Query: 7 LKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKERRFANDEEKSSDLGVIAAKQAIE 66
L S+ + P V N E Q +D+SDEWI RTGIK RRFA D+E ++ + A ++A+
Sbjct: 15 LLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALS 74
Query: 67 RAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLGIENKPAFDISAACTGFIYLLSVAK 126
A L+ DID V+V T + FL P A +++A LG + FD+SA C GF Y L A
Sbjct: 75 NAGLSAADIDGVIVTT-NTHFLQTPPAAPMVAASLGAKGILGFDLSAGCAGFGYALGAAA 133
Query: 127 AYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKESILDVQISA 186
+ G +L+VG EK S +D DRG C +F DGA A V+G T + I +
Sbjct: 134 DMIRGGGAATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVVGETP--FQGIGPTVAGS 191
Query: 187 NGNFSNYLYTPRTLKPTPFNAKEEASEPFLCMKGNEVFKLAVKTLLKDVEMILEKNALKP 246
+G ++ + + + F PF+ ++G VF+ A + ++ ++P
Sbjct: 192 DGEQADAI--RQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRP 249
Query: 247 EDVRLFIPHQANFRIIQAVREHLDFKDEQVVLT-VHKYGNTSAASIPMAMGEAYEEGRLK 305
+ + +F+PHQAN RI + + ++L + + VV + GNTSAASIP+AM E G K
Sbjct: 250 DQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAK 309
Query: 306 KGDLMLLDAFGGGLTWGSALV 326
GDL LL +G GL++ + +V
Sbjct: 310 PGDLALLIGYGAGLSYAAQVV 330
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 193 bits (490), Expect = 3e-50
Identities = 115/321 (35%), Positives = 174/321 (53%), Gaps = 6/321 (1%)
Query: 7 LKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKERRFANDEEKSSDLGVIAAKQAIE 66
L S+ + P V N E Q +D+SDEWI RTGIK RRFA D+E ++ + A ++A+
Sbjct: 35 LLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALS 94
Query: 67 RAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLGIENKPAFDISAACTGFIYLLSVAK 126
A L+ DID V+V T + FL P A +++A LG + FD+SA C GF Y L A
Sbjct: 95 NAGLSAADIDGVIVTT-NTHFLQTPPAAPMVAASLGAKGILGFDLSAGCAGFGYALGAAA 153
Query: 127 AYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKESILDVQISA 186
+ G +L+VG EK S +D DRG C +F DGA A V+G T + I +
Sbjct: 154 DMIRGGGAATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVVGETP--FQGIGPTVAGS 211
Query: 187 NGNFSNYLYTPRTLKPTPFNAKEEASEPFLCMKGNEVFKLAVKTLLKDVEMILEKNALKP 246
+G ++ + + + F PF+ ++G VF+ A + ++ ++P
Sbjct: 212 DGEQADAI--RQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRP 269
Query: 247 EDVRLFIPHQANFRIIQAVREHLDFKDEQVVLT-VHKYGNTSAASIPMAMGEAYEEGRLK 305
+ + +F+PHQAN RI + + ++L + + VV + GNTSAASIP+AM E G K
Sbjct: 270 DQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAK 329
Query: 306 KGDLMLLDAFGGGLTWGSALV 326
GDL LL +G GL++ + +V
Sbjct: 330 PGDLALLIGYGAGLSYAAQVV 350
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 43.9 bits (102), Expect = 3e-05
Identities = 74/295 (25%), Positives = 116/295 (39%), Gaps = 48/295 (16%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLGIEN--KPAFDISA 113
LG AA +AI+ I ++V T S + MP L+ LG+ K
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 114 ACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFGDG 163
C +L +AK E+ VL+V +E T+ RG LFGDG
Sbjct: 163 GCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFGDG 218
Query: 164 AGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPFLC 217
A A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 219 AAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDGHLREAGLTFHL 267
Query: 218 MKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQVV 277
+K +V + K + K + E + + +I H I+ V + L K E++
Sbjct: 268 LK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 278 LT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 326 ATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 42.4 bits (98), Expect = 7e-05
Identities = 74/297 (24%), Positives = 118/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
A G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 163 GAFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 216
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 217 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDGHLREAGLTF 265
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 266 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 323
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 324 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 41.2 bits (95), Expect = 2e-04
Identities = 73/297 (24%), Positives = 118/297 (39%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
+ G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 163 GSFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 216
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 217 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDGHLREAGLTF 265
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 266 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 323
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 324 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 40.8 bits (94), Expect = 2e-04
Identities = 73/297 (24%), Positives = 117/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 163 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 216
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 217 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDAHLREAGLTF 265
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 266 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 323
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 324 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 40.8 bits (94), Expect = 2e-04
Identities = 73/297 (24%), Positives = 117/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 163 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 216
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 217 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDGHLREAGLTF 265
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 266 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 323
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 324 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 40.8 bits (94), Expect = 2e-04
Identities = 73/297 (24%), Positives = 117/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 163 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 216
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 217 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDLHLREAGLTF 265
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 266 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 323
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 324 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 40.8 bits (94), Expect = 2e-04
Identities = 73/297 (24%), Positives = 117/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 163 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 216
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 217 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDVHLREAGLTF 265
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 266 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 323
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 324 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 40.8 bits (94), Expect = 2e-04
Identities = 73/297 (24%), Positives = 117/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 104 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 161
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 162 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 215
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 216 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDGHLREAGLTF 264
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 265 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 322
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 323 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 371
>pdb|1I8B|A Chain A, Chalcone Synthase (G256f)
pdb|1I8B|B Chain B, Chalcone Synthase (G256f)
Length = 389
Score = 40.8 bits (94), Expect = 2e-04
Identities = 73/297 (24%), Positives = 117/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 162
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 163 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 216
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 217 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDFHLREAGLTF 265
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 266 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 323
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 324 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 372
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 37.7 bits (86), Expect = 0.002
Identities = 72/297 (24%), Positives = 116/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 104 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 161
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 162 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 215
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 216 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDGHLREAGLTF 264
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I I+ V + L K E+
Sbjct: 265 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAQPGGPAILDQVEQKLALKPEK 322
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YGN S+A + + E KK L G GL WG V FG
Sbjct: 323 MNATREVLSEYGNMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 371
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 37.7 bits (86), Expect = 0.002
Identities = 72/297 (24%), Positives = 116/297 (38%), Gaps = 52/297 (17%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ I ++V T S + MP L+ LG ++ +
Sbjct: 103 LGKEAAVKAIKEWGQPKSKITHLIVCTTSG--VDMPGADYQLTKLLGLRPYVKRYMMYQQ 160
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC----------ILFG 161
G + L +AK E+ VL+V +E T+ RG LFG
Sbjct: 161 GXFAGGTV--LRLAKDLAENNKGARVLVVCSEVTAVTF----RGPSDTHLDSLVGQALFG 214
Query: 162 DGAGACVIGR--TKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKE----EASEPF 215
DGA A ++G +++ I ++ ++T +T+ P A + EA F
Sbjct: 215 DGAAALIVGSDPVPEIEKPIFEM-----------VWTAQTIAPDSEGAIDGHLREAGLTF 263
Query: 216 LCMKGNEVFKLAVKTLLKDVEMILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQ 275
+K +V + K + K + E + + +I H I+ V + L K E+
Sbjct: 264 HLLK--DVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEK 321
Query: 276 VVLT---VHKYGNTSAASIPMAMGEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFG 329
+ T + +YG S+A + + E KK L G GL WG V FG
Sbjct: 322 MNATREVLSEYGAMSSACVLFILDE-----MRKKSTQNGLKTTGEGLEWG---VLFG 370
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 36.6 bits (83), Expect = 0.004
Identities = 71/293 (24%), Positives = 118/293 (40%), Gaps = 47/293 (16%)
Query: 56 LGVIAAKQAIERAHLTPKDIDLVVVATLSPDFLAMPSTACVLSAKLG----IENKPAFDI 111
LG AA +AI+ L I ++ T + + MP L LG ++ +
Sbjct: 110 LGKEAAVKAIDEWGLPKSKITHLIFCTTAG--VDMPGADYQLVKLLGLSPSVKRYMLYQQ 167
Query: 112 SAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTC------ILFGDGAG 165
A G + L +AK E+ VLIV +E T+ + + LFGDGA
Sbjct: 168 GXAAGGTV--LRLAKDLAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAA 225
Query: 166 ACVIGRTKRLKESILDVQISANGNFSNYLYTPRTLKPTPFNAKEEASEPFLCMKGNEVFK 225
A ++G L + + T +T+ P E+A + L +G F+
Sbjct: 226 ALIVGSGPHL---------AVERPIFEIVSTDQTILPD----TEKAMKLHL-REGGLTFQ 271
Query: 226 L---AVKTLLKDVEMILEKNALKPEDVR-----LFIPHQANFRIIQAVREHLDFKDEQVV 277
L + K++E EK AL P + ++ H I+ V L+ K++++
Sbjct: 272 LHRDVPLMVAKNIENAAEK-ALSPLGITDWNSVFWMVHPGGRAILDQVERKLNLKEDKLR 330
Query: 278 LTVH---KYGNTSAASIPMAMGE----AYEEGRLKKG---DLMLLDAFGGGLT 320
+ H +YGN +A + + E + EG+ G D +L FG G+T
Sbjct: 331 ASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMT 383
>pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From
Sphingomonas Species A1 At 1.78a Resolution
pdb|1HV6|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii Complexed With
Trisaccharide Product
Length = 351
Score = 28.9 bits (63), Expect = 0.85
Identities = 14/43 (32%), Positives = 23/43 (52%)
Query: 238 ILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQVVLTV 280
+++K A +P+D R F P + + I+ R F DE +TV
Sbjct: 291 LIKKYASEPQDTRAFKPGRGDLNWIEYQRARFGFADELGFMTV 333
>pdb|1GR8|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1GR8|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1GR9|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1GR9|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1GRK|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1GRK|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 27.7 bits (60), Expect = 1.9
Identities = 15/40 (37%), Positives = 24/40 (59%)
Query: 38 RTGIKERRFANDEEKSSDLGVIAAKQAIERAHLTPKDIDL 77
R G+ + FA E +++ G+ AA +A ERA + + IDL
Sbjct: 223 RIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 26.9 bits (58), Expect = 3.2
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 5/74 (6%)
Query: 118 FIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKE 177
F + + A +VE + + +L+ G + + + G LFG GAG +G+T + E
Sbjct: 117 FAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG-GAG---VGKTVLIME 172
Query: 178 SILDVQISANGNFS 191
I +V A+G +S
Sbjct: 173 LINNV-AKAHGGYS 185
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.9 bits (58), Expect = 3.2
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 5/74 (6%)
Query: 118 FIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKE 177
F + + A +VE + + +L+ G + + + G LFG GAG +G+T + E
Sbjct: 117 FAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG-GAG---VGKTVLIME 172
Query: 178 SILDVQISANGNFS 191
I +V A+G +S
Sbjct: 173 LINNV-AKAHGGYS 185
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.9 bits (58), Expect = 3.2
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 5/74 (6%)
Query: 118 FIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKE 177
F + + A +VE + + +L+ G + + + G LFG GAG +G+T + E
Sbjct: 117 FAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG-GAG---VGKTVLIME 172
Query: 178 SILDVQISANGNFS 191
I +V A+G +S
Sbjct: 173 LINNV-AKAHGGYS 185
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 26.9 bits (58), Expect = 3.2
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 5/74 (6%)
Query: 118 FIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKE 177
F + + A +VE + + +L+ G + + + G LFG GAG +G+T + E
Sbjct: 117 FAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG-GAG---VGKTVLIME 172
Query: 178 SILDVQISANGNFS 191
I +V A+G +S
Sbjct: 173 LINNV-AKAHGGYS 185
>pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin
Length = 412
Score = 25.8 bits (55), Expect = 7.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 107 PAFDISAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVL 149
P+ I+ ACT ++ + A + G + ++ GAEK S+ L
Sbjct: 155 PSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPL 197
>pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
Length = 483
Score = 25.4 bits (54), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (49%)
Query: 33 EWIEKRTGIKERRFANDEEKSSDLGVIA 60
EW G +R ND E SD+G+ A
Sbjct: 10 EWYTPNDGQHWKRLQNDAEHLSDIGITA 37
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,861,614
Number of Sequences: 13198
Number of extensions: 75177
Number of successful extensions: 169
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 25
length of query: 331
length of database: 2,899,336
effective HSP length: 89
effective length of query: 242
effective length of database: 1,724,714
effective search space: 417380788
effective search space used: 417380788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)