BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15644636|ref|NP_206804.1| riboflavin synthase beta chain (ribE) [Helicobacter pylori 26695] (156 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1HQK|A  Chain A, Crystal Structure Analysis Of Lumazine ...   162  2e-41
pdb|1RVV|1  Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF ...   149  2e-37
pdb|1C2Y|A  Chain A, Crystal Structures Of A Pentameric Fung...   132  1e-32
pdb|1KZ6|A  Chain A, Mutant Enzyme W63yL119F LUMAZINE SYNTHA...    81  5e-17
pdb|1EJB|A  Chain A, Lumazine Synthase From Saccharomyces Ce...    81  5e-17
pdb|1KZ9|A  Chain A, Mutant Enzyme L119f Lumazine Synthase F...    79  2e-16
pdb|1KZ4|A  Chain A, Mutant Enzyme W63y Lumazine Synthase Fr...    79  2e-16
pdb|1KYV|A  Chain A, Lumazine Synthase From S.Pombe Bound To...    77  9e-16
pdb|1KZ1|A  Chain A, Mutant Enzyme W27g Lumazine Synthase Fr...    75  3e-15
pdb|1C41|A  Chain A, Crystal Structures Of A Pentameric Fung...    57  1e-09
pdb|1DI0|A  Chain A, Crystal Structure Of Lumazine Synthase ...    48  6e-07

>pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From
           Aquifex Aeolicus
 pdb|1HQK|B Chain B, Crystal Structure Analysis Of Lumazine Synthase From
           Aquifex Aeolicus
 pdb|1HQK|C Chain C, Crystal Structure Analysis Of Lumazine Synthase From
           Aquifex Aeolicus
 pdb|1HQK|D Chain D, Crystal Structure Analysis Of Lumazine Synthase From
           Aquifex Aeolicus
 pdb|1HQK|E Chain E, Crystal Structure Analysis Of Lumazine Synthase From
           Aquifex Aeolicus
          Length = 154

 Score =  162 bits (410), Expect = 2e-41
 Identities = 78/155 (50%), Positives = 110/155 (70%), Gaps = 1/155 (0%)

Query: 1   MQIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYEL 60
           MQI EGKL  +G  R  I+ SRFNH + DRL EGA+DC  RHGG E+ + +V VPG++E+
Sbjct: 1   MQIYEGKLTAEGL-RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEI 59

Query: 61  PFILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTD 120
           P    +L   E  D V  +G +IRG TPHFDY+++E +KG+A+  L+   P++FGV+T D
Sbjct: 60  PVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITAD 119

Query: 121 NIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLK 155
            +EQAIERAG+K GNKG+EA  + IE+ +L ++L+
Sbjct: 120 TLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLR 154

>pdb|1RVV|1 Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|2 Chain 2, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|3 Chain 3, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|4 Chain 4, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|B Chain B, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|C Chain C, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|D Chain D, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|E Chain E, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|F Chain F, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|G Chain G, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|H Chain H, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|I Chain I, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|J Chain J, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|K Chain K, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|L Chain L, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|M Chain M, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|N Chain N, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|O Chain O, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|P Chain P, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|Q Chain Q, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|R Chain R, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|S Chain S, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|T Chain T, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|U Chain U, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|V Chain V, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|W Chain W, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|X Chain X, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|Y Chain Y, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|Z Chain Z, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
          Length = 154

 Score =  149 bits (375), Expect = 2e-37
 Identities = 75/150 (50%), Positives = 100/150 (66%), Gaps = 1/150 (0%)

Query: 1   MQIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYEL 60
           M II+G L   G  ++ I+  RFN  IT +L  GA D   RHG D + +D+  VPGA+E+
Sbjct: 1   MNIIQGNLVGTGL-KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEI 59

Query: 61  PFILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTD 120
           PF   K+ E++KYD +  LG +IRG T H+DYV  EA KGIA A     +PV FG++TT+
Sbjct: 60  PFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTE 119

Query: 121 NIEQAIERAGSKAGNKGFEAMSTLIELLSL 150
           NIEQAIERAG+KAGNKG +   + IE+ +L
Sbjct: 120 NIEQAIERAGTKAGNKGVDCAVSAIEMANL 149

>pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|B Chain B, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|C Chain C, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|D Chain D, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|E Chain E, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|F Chain F, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|G Chain G, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|H Chain H, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|I Chain I, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|J Chain J, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|K Chain K, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|L Chain L, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|M Chain M, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|N Chain N, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|O Chain O, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|P Chain P, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|Q Chain Q, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|R Chain R, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|S Chain S, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C2Y|T Chain T, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
          Length = 156

 Score =  132 bits (333), Expect = 1e-32
 Identities = 71/150 (47%), Positives = 96/150 (63%), Gaps = 1/150 (0%)

Query: 1   MQIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYEL 60
           M  +EG +    + R AI+ +RFN  +T RL EGA+D FK++  +ED+ D+V VPGAYEL
Sbjct: 1   MNELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDI-DVVWVPGAYEL 59

Query: 61  PFILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTD 120
                 L +S KY  +  LGA+++G T H+D V   A+ G+  A L   +P  FGVLT D
Sbjct: 60  GVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCD 119

Query: 121 NIEQAIERAGSKAGNKGFEAMSTLIELLSL 150
           N++QAI RAG KAGNKG E+  T IE+ SL
Sbjct: 120 NMDQAINRAGGKAGNKGAESALTAIEMASL 149

>pdb|1KZ6|A Chain A, Mutant Enzyme W63yL119F LUMAZINE SYNTHASE FROM S.POMBE
 pdb|1KZ6|B Chain B, Mutant Enzyme W63yL119F LUMAZINE SYNTHASE FROM S.POMBE
 pdb|1KZ6|C Chain C, Mutant Enzyme W63yL119F LUMAZINE SYNTHASE FROM S.POMBE
 pdb|1KZ6|D Chain D, Mutant Enzyme W63yL119F LUMAZINE SYNTHASE FROM S.POMBE
 pdb|1KZ6|E Chain E, Mutant Enzyme W63yL119F LUMAZINE SYNTHASE FROM S.POMBE
          Length = 159

 Score = 81.3 bits (199), Expect = 5e-17
 Identities = 51/141 (36%), Positives = 79/141 (55%), Gaps = 3/141 (2%)

Query: 10  LQGNE-RVAILTSRFNHIITDRLQEGAMDCF-KRHGGDEDLLDIVLVPGAYELPFILDKL 67
           L+G E R+ I+ +R+N    + L +GA++   ++H    + +DI  VPG+YELP  +   
Sbjct: 13  LKGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSYELPQGIRAS 72

Query: 68  LESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIE 127
           +    YD V  +G +I+G T HF+Y+S     G+    L   +PV FG+LT  N EQA+ 
Sbjct: 73  IARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVIFGLLTVLNEEQALY 132

Query: 128 RAGSKAG-NKGFEAMSTLIEL 147
           RAG   G N G +  S  +E+
Sbjct: 133 RAGLNGGHNHGNDWGSAAVEM 153

>pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Cerevisiae
 pdb|1EJB|B Chain B, Lumazine Synthase From Saccharomyces Cerevisiae
 pdb|1EJB|C Chain C, Lumazine Synthase From Saccharomyces Cerevisiae
 pdb|1EJB|D Chain D, Lumazine Synthase From Saccharomyces Cerevisiae
 pdb|1EJB|E Chain E, Lumazine Synthase From Saccharomyces Cerevisiae
          Length = 168

 Score = 81.3 bits (199), Expect = 5e-17
 Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 5/121 (4%)

Query: 15  RVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYELPFILDKLLESEK-- 72
           RV I+ +R+N +I D L +GA++     G +E+ + I  VPG+YELP+   + ++ +   
Sbjct: 18  RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKL 77

Query: 73  ---YDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIERA 129
               D V  +G +I+G T HF+Y+S   T  + +   K  MPV FG+LT    EQA+ RA
Sbjct: 78  GKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137

Query: 130 G 130
           G
Sbjct: 138 G 138

>pdb|1KZ9|A Chain A, Mutant Enzyme L119f Lumazine Synthase From S.Pombe
 pdb|1KZ9|B Chain B, Mutant Enzyme L119f Lumazine Synthase From S.Pombe
 pdb|1KZ9|C Chain C, Mutant Enzyme L119f Lumazine Synthase From S.Pombe
 pdb|1KZ9|D Chain D, Mutant Enzyme L119f Lumazine Synthase From S.Pombe
 pdb|1KZ9|E Chain E, Mutant Enzyme L119f Lumazine Synthase From S.Pombe
          Length = 159

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 50/141 (35%), Positives = 79/141 (55%), Gaps = 3/141 (2%)

Query: 10  LQGNE-RVAILTSRFNHIITDRLQEGAMDCF-KRHGGDEDLLDIVLVPGAYELPFILDKL 67
           L+G E R+ I+ +R+N    + L +GA++   ++H    + +DI  VPG++ELP  +   
Sbjct: 13  LKGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRAS 72

Query: 68  LESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIE 127
           +    YD V  +G +I+G T HF+Y+S     G+    L   +PV FG+LT  N EQA+ 
Sbjct: 73  IARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVIFGLLTVLNEEQALY 132

Query: 128 RAGSKAG-NKGFEAMSTLIEL 147
           RAG   G N G +  S  +E+
Sbjct: 133 RAGLNGGHNHGNDWGSAAVEM 153

>pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.Pombe
 pdb|1KZ4|B Chain B, Mutant Enzyme W63y Lumazine Synthase From S.Pombe
 pdb|1KZ4|C Chain C, Mutant Enzyme W63y Lumazine Synthase From S.Pombe
 pdb|1KZ4|D Chain D, Mutant Enzyme W63y Lumazine Synthase From S.Pombe
 pdb|1KZ4|E Chain E, Mutant Enzyme W63y Lumazine Synthase From S.Pombe
          Length = 159

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 50/141 (35%), Positives = 78/141 (54%), Gaps = 3/141 (2%)

Query: 10  LQGNE-RVAILTSRFNHIITDRLQEGAMDCF-KRHGGDEDLLDIVLVPGAYELPFILDKL 67
           L+G E R+ I+ +R+N    + L +GA++   ++H    + +DI  VPG+YELP  +   
Sbjct: 13  LKGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSYELPQGIRAS 72

Query: 68  LESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIE 127
           +    YD V  +G +I+G T HF+Y+S     G+    L   +PV  G+LT  N EQA+ 
Sbjct: 73  IARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALY 132

Query: 128 RAGSKAG-NKGFEAMSTLIEL 147
           RAG   G N G +  S  +E+
Sbjct: 133 RAGLNGGHNHGNDWGSAAVEM 153

>pdb|1KYV|A Chain A, Lumazine Synthase From S.Pombe Bound To Riboflavin
 pdb|1KYV|B Chain B, Lumazine Synthase From S.Pombe Bound To Riboflavin
 pdb|1KYV|C Chain C, Lumazine Synthase From S.Pombe Bound To Riboflavin
 pdb|1KYV|D Chain D, Lumazine Synthase From S.Pombe Bound To Riboflavin
 pdb|1KYV|E Chain E, Lumazine Synthase From S.Pombe Bound To Riboflavin
 pdb|1KYX|A Chain A, Lumazine Synthase From S.Pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|B Chain B, Lumazine Synthase From S.Pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|C Chain C, Lumazine Synthase From S.Pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|D Chain D, Lumazine Synthase From S.Pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|E Chain E, Lumazine Synthase From S.Pombe Bound To
           Carboxyethyllumazine
 pdb|1KYY|A Chain A, Lumazine Synthase From S.Pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|B Chain B, Lumazine Synthase From S.Pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|C Chain C, Lumazine Synthase From S.Pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|D Chain D, Lumazine Synthase From S.Pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|E Chain E, Lumazine Synthase From S.Pombe Bound To
           Nitropyrimidinedione
          Length = 159

 Score = 77.0 bits (188), Expect = 9e-16
 Identities = 49/141 (34%), Positives = 78/141 (54%), Gaps = 3/141 (2%)

Query: 10  LQGNE-RVAILTSRFNHIITDRLQEGAMDCF-KRHGGDEDLLDIVLVPGAYELPFILDKL 67
           L+G E R+ I+ +R+N    + L +GA++   ++H    + +DI  VPG++ELP  +   
Sbjct: 13  LKGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRAS 72

Query: 68  LESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIE 127
           +    YD V  +G +I+G T HF+Y+S     G+    L   +PV  G+LT  N EQA+ 
Sbjct: 73  IARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALY 132

Query: 128 RAGSKAG-NKGFEAMSTLIEL 147
           RAG   G N G +  S  +E+
Sbjct: 133 RAGLNGGHNHGNDWGSAAVEM 153

>pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.Pombe
 pdb|1KZ1|B Chain B, Mutant Enzyme W27g Lumazine Synthase From S.Pombe
 pdb|1KZ1|C Chain C, Mutant Enzyme W27g Lumazine Synthase From S.Pombe
 pdb|1KZ1|D Chain D, Mutant Enzyme W27g Lumazine Synthase From S.Pombe
 pdb|1KZ1|E Chain E, Mutant Enzyme W27g Lumazine Synthase From S.Pombe
          Length = 159

 Score = 75.5 bits (184), Expect = 3e-15
 Identities = 49/141 (34%), Positives = 77/141 (53%), Gaps = 3/141 (2%)

Query: 10  LQGNE-RVAILTSRFNHIITDRLQEGAMDCF-KRHGGDEDLLDIVLVPGAYELPFILDKL 67
           L+G E R+ I+ +R N    + L +GA++   ++H    + +DI  VPG++ELP  +   
Sbjct: 13  LKGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRAS 72

Query: 68  LESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIE 127
           +    YD V  +G +I+G T HF+Y+S     G+    L   +PV  G+LT  N EQA+ 
Sbjct: 73  IARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALY 132

Query: 128 RAGSKAG-NKGFEAMSTLIEL 147
           RAG   G N G +  S  +E+
Sbjct: 133 RAGLNGGHNHGNDWGSAAVEM 153

>pdb|1C41|A Chain A, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|B Chain B, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|C Chain C, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|D Chain D, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|E Chain E, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|F Chain F, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|G Chain G, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|H Chain H, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|I Chain I, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
 pdb|1C41|J Chain J, Crystal Structures Of A Pentameric Fungal And An
           Icosahedral Plant Lumazine Synthase Reveals The
           Structural Basis For Differences In Assembly
          Length = 200

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 39/157 (24%), Positives = 65/157 (40%), Gaps = 36/157 (22%)

Query: 15  RVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYELPFILDKLLESEK-- 72
           R+ I+ +R+N  I + L  G        G  E  + +  VPG++ELP  + +L  + +  
Sbjct: 17  RIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQ 76

Query: 73  ----------------------------------YDGVCVLGAIIRGGTPHFDYVSAEAT 98
                                             +D +  +G +I+G T HF+Y++   +
Sbjct: 77  TPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVS 136

Query: 99  KGIAHAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGN 135
            G+    L   +PV FGVLT    +QA  RAG   G+
Sbjct: 137 HGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGS 173

>pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
           Abortus
 pdb|1DI0|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
           Abortus
 pdb|1DI0|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
           Abortus
 pdb|1DI0|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
           Abortus
 pdb|1DI0|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
           Abortus
          Length = 158

 Score = 47.8 bits (112), Expect = 6e-07
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 15  RVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYELPFILDKLLESEKYD 74
           ++A + +R++  I D  ++  +       G    ++I  VPGAYE+P     L  + +Y 
Sbjct: 12  KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYA 71

Query: 75  GVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTDNIEQAIERAGSKAG 134
            +     +I GG    D+V+     G+    L+  +PV   VLT  +  ++ E       
Sbjct: 72  AIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHA 131

Query: 135 N---KGFEAMSTLIELLS 149
           +   KG EA    ++++S
Sbjct: 132 HFKVKGVEAAHAALQIVS 149

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.140    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 911,016
Number of Sequences: 13198
Number of extensions: 38053
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 13
length of query: 156
length of database: 2,899,336
effective HSP length: 81
effective length of query: 75
effective length of database: 1,830,298
effective search space: 137272350
effective search space used: 137272350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)