BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644653|ref|NP_206822.1| carboxynorspermidine
decarboxylase (nspC) [Helicobacter pylori 26695]
(405 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosom... 36 0.007
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei... 36 0.007
pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine De... 31 0.22
pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxyla... 30 0.38
pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nit... 27 5.4
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 36.2 bits (82), Expect = 0.007
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 324 NQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSL 382
N+ + + GPTC D + + ++ G+ ++F+DM YT+V +SFNG P++
Sbjct: 347 NEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTI 405
>pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
Length = 425
Score = 36.2 bits (82), Expect = 0.007
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 324 NQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSL 382
N+ + + GPTC D + + ++ G+ ++F+DM YT+V +SFNG P++
Sbjct: 347 NEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTI 405
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 31.2 bits (69), Expect = 0.22
Identities = 19/87 (21%), Positives = 43/87 (48%), Gaps = 1/87 (1%)
Query: 316 LIEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFN 375
L++ ++ +S + GPTC D + + GD ++F++M YT+ ++FN
Sbjct: 333 LLQKRPKPDERYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFN 392
Query: 376 GVPLPSLAR-LDQQGFKILKNFSYEDY 401
G P++ + +++++ F D+
Sbjct: 393 GFQRPTIYYVMSGPAWQLMQQFQNPDF 419
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 30.4 bits (67), Expect = 0.38
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 316 LIEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFN 375
L++ ++ +S + GPTC D + + GD ++F++M YT+ ++FN
Sbjct: 339 LLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFN 398
Query: 376 GVPLPSL 382
G P++
Sbjct: 399 GFQRPNI 405
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 26.6 bits (57), Expect = 5.4
Identities = 16/66 (24%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Query: 192 EQNADALCRTLEHVEKHFRPYLENMAWVNFGGGHHITKSD----YDVNLLIQTIKDFKER 247
EQ A+ E++EK+ ++ W++ GG HH SD ++ +L+I + +
Sbjct: 65 EQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAE 124
Query: 248 YHNIEV 253
Y+ + +
Sbjct: 125 YNKLHL 130
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,493,384
Number of Sequences: 13198
Number of extensions: 109830
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 5
length of query: 405
length of database: 2,899,336
effective HSP length: 90
effective length of query: 315
effective length of database: 1,711,516
effective search space: 539127540
effective search space used: 539127540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)