BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644832|ref|NP_207002.1| hypothetical protein
[Helicobacter pylori 26695]
         (91 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1BXC|A  Chain A, Xylose Isomerase From Thermus Caldophil...    25  1.9
pdb|1KRU|A  Chain A, Galactoside Acetyltransferase In Comple...    23  4.1
pdb|1BXB|A  Chain A, Xylose Isomerase From Thermus Thermophi...    23  5.4

>pdb|1BXC|A Chain A, Xylose Isomerase From Thermus Caldophilus
 pdb|1BXC|B Chain B, Xylose Isomerase From Thermus Caldophilus
 pdb|1BXC|C Chain C, Xylose Isomerase From Thermus Caldophilus
 pdb|1BXC|D Chain D, Xylose Isomerase From Thermus Caldophilus
          Length = 387

 Score = 24.6 bits (52), Expect = 1.9
 Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 8/46 (17%)

Query: 44 VHSVKYYLQD-------PQERDHKLEKCHQAFDST-LKVNFITNLL 81
          VH V  + +D       PQERD  + +  +A D T LKV  +T  L
Sbjct: 47 VHGVNLHDEDLIPRGTPPQERDQIVRRFKRALDETGLKVPMVTGNL 92



>pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
          Coenzyme A
 pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
          Coenzyme A
 pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
          Coenzyme A
 pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And
          Pnp- Beta-Gal
 pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And
          Pnp- Beta-Gal
 pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And
          Pnp- Beta-Gal
 pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
          Coenzyme A
 pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
 pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
          Coenzyme A
 pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
 pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
          Coenzyme A
 pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
          Length = 203

 Score = 23.5 bits (49), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (53%)

Query: 23 SDHCEGTPDSRIPPMGFHFSFVHS 46
          +D CEG P+ R+      + F HS
Sbjct: 16 TDMCEGLPEKRLRGKTLMYEFNHS 39



>pdb|1BXB|A Chain A, Xylose Isomerase From Thermus Thermophilus
 pdb|1BXB|B Chain B, Xylose Isomerase From Thermus Thermophilus
 pdb|1BXB|C Chain C, Xylose Isomerase From Thermus Thermophilus
 pdb|1BXB|D Chain D, Xylose Isomerase From Thermus Thermophilus
          Length = 387

 Score = 23.1 bits (48), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 54 PQERDHKLEKCHQAFDST-LKVNFIT 78
          PQERD  + +  +A D T LKV  +T
Sbjct: 64 PQERDQIVRRFKKALDETGLKVPMVT 89



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,383
Number of Sequences: 13198
Number of extensions: 17767
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 2,899,336
effective HSP length: 67
effective length of query: 24
effective length of database: 2,015,070
effective search space: 48361680
effective search space used: 48361680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)