BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644833|ref|NP_207003.1| hypothetical protein
[Helicobacter pylori 26695]
(127 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|8PAZ| Oxidized Native Pseudoazurin From A. Faecalis >... 27 0.71
pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehyd... 26 1.6
pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood... 25 3.5
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 24 4.6
pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bo... 24 6.0
pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicilli... 23 7.8
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Lichenifor... 23 7.8
pdb|1ADW|A Chain A, Pseudoazurin >gi|2194101|pdb|1ADW|B Cha... 23 7.8
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 23 7.8
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 23 7.8
>pdb|8PAZ| Oxidized Native Pseudoazurin From A. Faecalis
pdb|3PAZ| Reduced Native Pseudoazurin From A. Faecalis
pdb|1PZC| Apo-Pseudoazurin (Metal Free Protein)
pdb|1PAZ| Pseudoazurin (Oxidized Cu ++ At pH 6.8)
pdb|1PZA| Pseudoazurin (Ph 7.8)
pdb|1PZB| Pseudoazurin (Ph 4.4)
Length = 123
Score = 26.9 bits (58), Expect = 0.71
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 62 VNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPN 107
V++G++ E+ K + P+ +KFK + ++ L +Q Y + C P+
Sbjct: 36 VDKGHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCTPH 81
>pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
pdb|1HDG|Q Chain Q, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
Length = 332
Score = 25.8 bits (55), Expect = 1.6
Identities = 17/69 (24%), Positives = 29/69 (41%)
Query: 35 LMGKMTDSSLLSITSMNDEPVVIKNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKY 94
+M + T+ L I NDEP+V ++I + G K +D+E Y
Sbjct: 259 VMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGY 318
Query: 95 SQQIFYRLD 103
S ++ L+
Sbjct: 319 SNRVVDTLE 327
>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|B Chain B, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|C Chain C, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|D Chain D, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|E Chain E, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|F Chain F, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|G Chain G, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|H Chain H, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|I Chain I, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|J Chain J, Thioredoxin Peroxidase B From Red Blood Cells
Length = 197
Score = 24.6 bits (52), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 82 FKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGEYYHK 124
FK+ KL D++ KY FY LD E+ +++ E + K
Sbjct: 24 FKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRAEDFRK 66
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 24.3 bits (51), Expect = 4.6
Identities = 17/61 (27%), Positives = 24/61 (38%)
Query: 34 KLMGKMTDSSLLSITSMNDEPVVIKNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHELK 93
K +GK L SM N I+ + K+ +LGDK +D EL+
Sbjct: 79 KYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYDIELQ 138
Query: 94 Y 94
Y
Sbjct: 139 Y 139
>pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|B Chain B, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|C Chain C, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|D Chain D, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|E Chain E, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|F Chain F, Human Tissue Transglutaminase In Gdp Bound Form
Length = 687
Score = 23.9 bits (50), Expect = 6.0
Identities = 14/49 (28%), Positives = 26/49 (52%)
Query: 39 MTDSSLLSITSMNDEPVVIKNLIVNRGNSCEATKKVEPKLGDKFKKEKL 87
+T+S+L+ + ++ EPV+ L+ R E + LG+ +K KL
Sbjct: 555 LTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKL 603
>pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|4BLM|B Chain B, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|2BLM|A Chain A, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
pdb|2BLM|B Chain B, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
Length = 265
Score = 23.5 bits (49), Expect = 7.8
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 58 KNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHEL 92
+NLI+ + E+ KK K+GD+ + F+ EL
Sbjct: 107 QNLILKQIGGPESLKKELRKIGDEVTNPERFEPEL 141
>pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 23.5 bits (49), Expect = 7.8
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 58 KNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHEL 92
+NLI+ + E+ KK K+GD+ + F+ EL
Sbjct: 124 QNLILKQIGGPESLKKELRKIGDEVTNPERFEPEL 158
>pdb|1ADW|A Chain A, Pseudoazurin
pdb|1ADW|B Chain B, Pseudoazurin
Length = 123
Score = 23.5 bits (49), Expect = 7.8
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 56 VIKNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPN 107
VI + ++ ++ EA K++ P+ + FK + + L ++ Y + C P+
Sbjct: 30 VINFVPTDKSHNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKCTPH 81
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 23.5 bits (49), Expect = 7.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 50 MNDEPVVIKNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQI 98
+ EP+ N + G A K + KLG + KK+ + D +K + I
Sbjct: 155 LEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI 203
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 23.5 bits (49), Expect = 7.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 50 MNDEPVVIKNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQI 98
+ EP+ N + G A K + KLG + KK+ + D +K + I
Sbjct: 155 LEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI 203
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,928
Number of Sequences: 13198
Number of extensions: 25287
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 10
length of query: 127
length of database: 2,899,336
effective HSP length: 78
effective length of query: 49
effective length of database: 1,869,892
effective search space: 91624708
effective search space used: 91624708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)