BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644834|ref|NP_207004.1| hypothetical protein
[Helicobacter pylori 26695]
(793 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 32 0.36
pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia... 32 0.36
pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1S... 31 0.47
pdb|1GW9|A Chain A, Tri-Iodide Derivative Of Xylose Isomera... 30 1.0
pdb|1XYM|A Chain A, Xylose Isomerase (E.C.5.3.1.5) Mutant W... 30 1.4
pdb|1XYA|A Chain A, Xylose Isomerase (E.C.5.3.1.5) >gi|5763... 30 1.4
pdb|1MUW|A Chain A, The 0.86 Angstrom Structure Of Xylose I... 30 1.4
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 29 1.8
pdb|1CII| Colicin Ia 29 2.3
pdb|1IU4|A Chain A, Crystal Structure Analysis Of The Micro... 28 3.9
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin As... 27 8.8
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crysta... 27 8.8
pdb|1B97|A Chain A, Restriction Endonuclease Ecorv Mutant Q... 27 8.8
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 31.6 bits (70), Expect = 0.36
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 501 LNKNIIYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHD 545
+ K +++MDEP ++L R R LK+ + VT + THD
Sbjct: 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 31.6 bits (70), Expect = 0.36
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 569 IKNHFNYPLNNAGKDSDALDKIKRSLGVGQHVFHNPKK--HQIIFVEGITDYCYLSAFKL 626
I+N F++P N A DSD+ KIK + V +V + + + + + G D Y+S +
Sbjct: 105 IRNDFDFPANQAKSDSDS-SKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRS 163
Query: 627 YFNEREFKENPIPFTFLPISGLKNN 651
+F++ + F F + L NN
Sbjct: 164 FFSDCRI-SGTVDFIFGDGTALFNN 187
>pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 594
Score = 31.2 bits (69), Expect = 0.47
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 658 TIQKLCELDNHPIVLTDDDRKDGSDPQRAKSEQFKNANEEMHDPIRILQL 707
T+ KLC ++ + TD + + DP RA +AN +D IRI+ L
Sbjct: 361 TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILL 410
>pdb|1GW9|A Chain A, Tri-Iodide Derivative Of Xylose Isomerase From
Streptomyces Rubiginosus
pdb|1XIF| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With Glucose, Mn, And
Mg (Ph 8.0)
pdb|1XIB| D-Xylose Isomerase (E.C.5.3.1.5) (Ph 7.4)
pdb|1XID| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With L-Ascorbic Acid,
Mn, And Mg (Ph 7.4)
pdb|1XIE| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With
1,5-Dianhydrosorbitol (Ph 7.4)
pdb|9XIA| D-Xylose Isomerase (E.C.5.3.1.5) Complex With Inactivator
pdb|8XIA| D-Xylose Isomerase (E.C.5.3.1.5) Complex With D-Xylose
pdb|1XIC| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With D-Xylose (Ph 9.0)
pdb|1XIG| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With Xylitol, Mg, And
Mn (Ph 7.4)
pdb|1XII| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With 300mm D-Xylulose
And Mn (Ph 8.0)
pdb|1XIH| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With D-Sorbitol And No
Added Mn (Ph 9.0)
pdb|1XIJ| D-Xylose Isomerase (E.C.5.3.1.5) Complexed With Threonate And Mn
(Ph 9.0)
Length = 388
Score = 30.0 bits (66), Expect = 1.0
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 657 ETIQKLCELDNHPIVLTDDDRKDGSDPQRAKSEQFKNANEEMHDPIRILQLSDCDRHFKQ 716
E++Q+L EL H + DDD + E K + + D + ++ +
Sbjct: 38 ESVQRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDTGMKVPMATTNLFTHP 97
Query: 717 I--EDCFSANDR-------KKYAKNKQMELAMAFKTRLLYGEKDDVMSEETK 759
+ + F+ANDR +K +N + + + +T + +G ++ S K
Sbjct: 98 VFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAK 149
>pdb|1XYM|A Chain A, Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu A 180 And
Glu B 680 Replaced By Lys (E(A 180)k, E(B 680)k)
Complexed With Glucose
pdb|1XYM|B Chain B, Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu A 180 And
Glu B 680 Replaced By Lys (E(A 180)k, E(B 680)k)
Complexed With Glucose
pdb|1XYL|A Chain A, Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu A 180 And
Glu B 680 Replaced By Lys (E(A 180)k, E(B 680)k)
pdb|1XYL|B Chain B, Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu A 180 And
Glu B 680 Replaced By Lys (E(A 180)k, E(B 680)k)
Length = 386
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/112 (20%), Positives = 45/112 (39%), Gaps = 9/112 (8%)
Query: 657 ETIQKLCELDNHPIVLTDDDRKDGSDPQRAKSEQFKNANEEMHDPIRILQLSDCDRHFKQ 716
ET+Q+L EL H + DDD + K + + + ++ +
Sbjct: 37 ETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHP 96
Query: 717 I--EDCFSANDR-------KKYAKNKQMELAMAFKTRLLYGEKDDVMSEETK 759
+ + F+ANDR +K +N + + + KT + +G ++ S K
Sbjct: 97 VFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAK 148
>pdb|1XYA|A Chain A, Xylose Isomerase (E.C.5.3.1.5)
pdb|1XYA|B Chain B, Xylose Isomerase (E.C.5.3.1.5)
pdb|1XYB|A Chain A, Xylose Isomerase (E.C.5.3.1.5) Complexed With Glucose
pdb|1XYB|B Chain B, Xylose Isomerase (E.C.5.3.1.5) Complexed With Glucose
pdb|1XYC|A Chain A, Xylose Isomerase (E.C.5.3.1.5) Complexed With
3-O-Methylfructose
pdb|1XYC|B Chain B, Xylose Isomerase (E.C.5.3.1.5) Complexed With
3-O-Methylfructose
pdb|2GYI|A Chain A, Xylose Isomerase (Glucose Isomerase) (E.C.5.3.1.5)
pdb|2GYI|B Chain B, Xylose Isomerase (Glucose Isomerase) (E.C.5.3.1.5)
Length = 386
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/112 (20%), Positives = 45/112 (39%), Gaps = 9/112 (8%)
Query: 657 ETIQKLCELDNHPIVLTDDDRKDGSDPQRAKSEQFKNANEEMHDPIRILQLSDCDRHFKQ 716
ET+Q+L EL H + DDD + K + + + ++ +
Sbjct: 37 ETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHP 96
Query: 717 I--EDCFSANDR-------KKYAKNKQMELAMAFKTRLLYGEKDDVMSEETK 759
+ + F+ANDR +K +N + + + KT + +G ++ S K
Sbjct: 97 VFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAK 148
>pdb|1MUW|A Chain A, The 0.86 Angstrom Structure Of Xylose Isomerase
Length = 386
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/112 (20%), Positives = 45/112 (39%), Gaps = 9/112 (8%)
Query: 657 ETIQKLCELDNHPIVLTDDDRKDGSDPQRAKSEQFKNANEEMHDPIRILQLSDCDRHFKQ 716
ET+Q+L EL H + DDD + K + + + ++ +
Sbjct: 37 ETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHP 96
Query: 717 I--EDCFSANDR-------KKYAKNKQMELAMAFKTRLLYGEKDDVMSEETK 759
+ + F+ANDR +K +N + + + KT + +G ++ S K
Sbjct: 97 VFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAK 148
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Query: 507 YVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDHL 554
YV+DE + L + F+R LKE + H F++ TH+ +++ L
Sbjct: 245 YVLDEVDSPLDDYNAERFKRLLKE--NSKHTQFIVITHNKIVMEAADL 290
>pdb|1CII| Colicin Ia
Length = 602
Score = 28.9 bits (63), Expect = 2.3
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 46 TPNKKYNSDEFFIMGKHKQNQLAKIYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDF 105
T +K+ +D + K K+N ++ N+ I ++ + DE+ T D
Sbjct: 383 TNEQKHANDALNALLKEKEN------------IRNQLSGINQKIAEEKRKQDELKATKDA 430
Query: 106 TKFTPETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLK-KKIKN---SLKYLEKTRK 161
FT E +K + EKY + R G K KKI+N +LK EK R
Sbjct: 431 INFTTE-----FLKSVSEKYGAKAE-----QLAREMAGQAKGKKIRNVEEALKTYEKYRA 480
Query: 162 NFERK 166
+ +K
Sbjct: 481 DINKK 485
>pdb|1IU4|A Chain A, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|B Chain B, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|C Chain C, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|D Chain D, Crystal Structure Analysis Of The Microbial
Transglutaminase
Length = 331
Score = 28.1 bits (61), Expect = 3.9
Identities = 19/66 (28%), Positives = 30/66 (44%), Gaps = 1/66 (1%)
Query: 664 ELDNHPIVLTDDDRKDGSDPQRAKSEQFKNANEEMHDPIRILQLSDCDRHFKQIEDCFSA 723
EL N L ++D + + FK N HDP R ++ +HF +D S+
Sbjct: 153 ELANGNDALRNEDARSPFYSALRNTPSFKERNGGNHDPSR-MKAVIYSKHFWSGQDRSSS 211
Query: 724 NDRKKY 729
D++KY
Sbjct: 212 ADKRKY 217
>pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
Length = 289
Score = 26.9 bits (58), Expect = 8.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 2 SELVTEYANATNNLLFKELIKHVSGNSEGIKNFCQCVKEIKK 43
+EL NA LLFK+ I+ + +EGI N + ++KK
Sbjct: 186 NELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 227
>pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 418
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 64 QNQLAKIYSYFKKLSEGEIKPQNEDILKKL 93
+ +LAKI S +K+SE +I NE LK+L
Sbjct: 40 KTELAKILSGLEKISEEDIHTANERRLKEL 69
>pdb|1B97|A Chain A, Restriction Endonuclease Ecorv Mutant Q69l
pdb|1B97|B Chain B, Restriction Endonuclease Ecorv Mutant Q69l
Length = 244
Score = 26.9 bits (58), Expect = 8.8
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 67 LAKIYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDFTKFTPETEVKDIIKEIDEKYP 126
L+ I+ F + +I ++ I+++ K L+ DFT + P K I +I Y
Sbjct: 39 LSTIFELFSRPIINKIAEKHGYIVEEPKQLNHY---PDFTLYKPSEPNKKIAIDIKTTYT 95
Query: 127 INENFKQQFRTFRLNIGNLKKKIKNSLK 154
EN K +F +G I+N+ K
Sbjct: 96 NKENEKIKF-----TLGGYTSFIRNNTK 118
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,741,473
Number of Sequences: 13198
Number of extensions: 207800
Number of successful extensions: 668
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 13
length of query: 793
length of database: 2,899,336
effective HSP length: 96
effective length of query: 697
effective length of database: 1,632,328
effective search space: 1137732616
effective search space used: 1137732616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)