BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644835|ref|NP_207005.1| hypothetical protein
[Helicobacter pylori 26695]
(108 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LN0|A Chain A, Structure Of The Catalytic Domain Of Ho... 27 0.25
pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Ra... 27 0.33
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase >... 27 0.33
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 26 0.57
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 26 0.74
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 26 0.74
pdb|1JK8|A Chain A, Crystal Structure Of A Human Insulin Pe... 25 0.96
pdb|1MK0|A Chain A, Catalytic Domain Of Intron Endonuclease... 25 1.3
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 25 1.6
pdb|1JAJ|A Chain A, Solution Structure Of Dna Polymerase X ... 25 1.6
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 24 2.1
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 24 2.8
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 24 2.8
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 23 6.3
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 23 6.3
pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_... 22 8.2
pdb|1BH2| A326s Mutant Of An Inhibitory Alpha Subunit 22 8.2
pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 B... 22 8.2
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 Wi... 22 8.2
pdb|1GIL| G I Alpha1 (Guanine Nucleotide-Binding Protein ... 22 8.2
>pdb|1LN0|A Chain A, Structure Of The Catalytic Domain Of Homing Endonuclease
I- Tevi
pdb|1LN0|B Chain B, Structure Of The Catalytic Domain Of Homing Endonuclease
I- Tevi
Length = 97
Score = 27.3 bits (59), Expect = 0.25
Identities = 23/90 (25%), Positives = 38/90 (41%), Gaps = 29/90 (32%)
Query: 12 HFRNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDADIKLCNEEDYF 71
HF++L + + L SF KHG NV + ++L+ +
Sbjct: 31 HFKDLEKGCHSSIKLQRSFNKHG---------NVFECSILEEI----------------- 64
Query: 72 KPHEKDSLLSLEEETI--LDHKITGFSCVD 99
P+EKD ++ E I L+ KI G++ D
Sbjct: 65 -PYEKDLIIERENFWIKELNSKINGYNIAD 93
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 26.9 bits (58), Expect = 0.33
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 35 GLVILVGENNVGKSNVLKALTI--FNDADIKLCNEEDYFKPHEKDSLLSL 82
G+ +++G+N GKS++L A+ + + IK ++++ K +D+ + L
Sbjct: 24 GINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDL 73
>pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
Length = 149
Score = 26.9 bits (58), Expect = 0.33
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 35 GLVILVGENNVGKSNVLKALTI--FNDADIKLCNEEDYFKPHEKDSLLSL 82
G+ +++G+N GKS++L A+ + + IK ++++ K +D+ + L
Sbjct: 24 GINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDL 73
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 26.2 bits (56), Expect = 0.57
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 13 FRNL-----GRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDAD 61
FRN+ GR P +N G V LVG + GKS + +T F D D
Sbjct: 344 FRNVTFTYPGRDVPALRNINLKIPA-GKTVALVGRSGSGKSTIASLITRFYDID 396
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 25.8 bits (55), Expect = 0.74
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 34 GGLVILVGENNVGKSNVLKALTIFNDAD 61
G + +++G N GKS ++ +T F AD
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 25.8 bits (55), Expect = 0.74
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 34 GGLVILVGENNVGKSNVLKALTIFNDAD 61
G + +++G N GKS ++ +T F AD
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1JK8|A Chain A, Crystal Structure Of A Human Insulin Peptide-Hla-Dq8
Complex
Length = 181
Score = 25.4 bits (54), Expect = 0.96
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 1 MEFYKRVLKLHHFRNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDA 60
+E + V +L FR R P N + KH +++ N+ +N + +T+F+ +
Sbjct: 36 LERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKS 95
Query: 61 DIKL 64
+ L
Sbjct: 96 PVTL 99
>pdb|1MK0|A Chain A, Catalytic Domain Of Intron Endonuclease I-Tevi, E75a
Mutant
Length = 97
Score = 25.0 bits (53), Expect = 1.3
Identities = 22/90 (24%), Positives = 37/90 (40%), Gaps = 29/90 (32%)
Query: 12 HFRNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDADIKLCNEEDYF 71
HF++L + + L SF KHG NV + ++L+ +
Sbjct: 31 HFKDLEKGCHSSIKLQRSFNKHG---------NVFECSILEEI----------------- 64
Query: 72 KPHEKDSLLSLEEETI--LDHKITGFSCVD 99
P+EKD ++ I L+ KI G++ D
Sbjct: 65 -PYEKDLIIERANFWIKELNSKINGYNIAD 93
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 24.6 bits (52), Expect = 1.6
Identities = 14/39 (35%), Positives = 18/39 (45%), Gaps = 10/39 (25%)
Query: 34 GGLVILVGENNVGKSNVLKALT----------IFNDADI 62
G +V L+G N GK+ L A+ IFN DI
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70
>pdb|1JAJ|A Chain A, Solution Structure Of Dna Polymerase X From The African
Swine Fever Virus
pdb|1JQR|A Chain A, Nmr Structure Of The African Swine Fever Virus Dna
Polymerase X
Length = 174
Score = 24.6 bits (52), Expect = 1.6
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 17 GRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDADIKLCNEEDYFKPH 74
G+K L +FE +G L+ ++ +N V ++ + + ND D+ + E H
Sbjct: 7 GKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLNDVDLLIIVPEKKLLKH 64
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 24.3 bits (51), Expect = 2.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 35 GLVILVGENNVGKSNVLKAL 54
G + +VG NVGKS +L L
Sbjct: 9 GFIAIVGRPNVGKSTLLNKL 28
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 23.9 bits (50), Expect = 2.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 35 GLVILVGENNVGKSNVLKALTI 56
GL++L+G+ VGK+ + A+ +
Sbjct: 328 GLIMLMGKGGVGKTTMAAAIAV 349
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 23.9 bits (50), Expect = 2.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 16 LGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKAL 54
+GR+ +E + + +LVGE+ VGK+ + + L
Sbjct: 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGL 227
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 22.7 bits (47), Expect = 6.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 41 GENNVGKSNVLKALTIFND 59
GE+ V K ++LKA+ +F +
Sbjct: 293 GESQVSKESMLKAIDLFKE 311
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 22.7 bits (47), Expect = 6.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 8 LKLHHFRNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKAL 54
L L F++ GR S + + +VG N GKSN++ A+
Sbjct: 6 LYLKGFKSFGRPSLIGFS--------DRVTAIVGPNGSGKSNIIDAI 44
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT| Structure Of Gtp-Binding Protein
Length = 353
Score = 22.3 bits (46), Expect = 8.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 37 VILVGENNVGKSNVLKALTIFNDA 60
++L+G GKS ++K + I ++A
Sbjct: 35 LLLLGAGESGKSTIVKQMKIIHEA 58
>pdb|1BH2| A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 22.3 bits (46), Expect = 8.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 37 VILVGENNVGKSNVLKALTIFNDA 60
++L+G GKS ++K + I ++A
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEA 28
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The
Goloco Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The
Goloco Motif Of Rgs14
Length = 325
Score = 22.3 bits (46), Expect = 8.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 37 VILVGENNVGKSNVLKALTIFNDA 60
++L+G GKS ++K + I ++A
Sbjct: 7 LLLLGAGESGKSTIVKQMKIIHEA 30
>pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With
Gdp Bound
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1BOF| Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD| Gtp-Ase Mol_id: 1; Molecule: Gi Alpha 1; Chain: Null; Synonym:
Gia1, Guanine Nucleotide-Binding Protein G(I), Alpha-1
Subunit; Heterogen: Gdp; Other_details: Inactive Form
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1GFI| Guanine Nucleotide-Binding Protein G(I), Alpha-1 Subunit
(G(I)-Alpha-1) (Active Form) Complexed With Gdp-Alf4
pdb|1GIA| Gi Alpha 1 (Active Form With Bound Gtp-Gamma-S)
Length = 353
Score = 22.3 bits (46), Expect = 8.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 37 VILVGENNVGKSNVLKALTIFNDA 60
++L+G GKS ++K + I ++A
Sbjct: 35 LLLLGAGESGKSTIVKQMKIIHEA 58
>pdb|1GIL| G I Alpha1 (Guanine Nucleotide-Binding Protein G(I), Alpha-1
Subunit) Mutant With Gln 204 Replaced By Leu (Q204l)
Complexed With Gtp-Gamma-S And Magnesium
Length = 353
Score = 22.3 bits (46), Expect = 8.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 37 VILVGENNVGKSNVLKALTIFNDA 60
++L+G GKS ++K + I ++A
Sbjct: 35 LLLLGAGESGKSTIVKQMKIIHEA 58
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,309
Number of Sequences: 13198
Number of extensions: 23866
Number of successful extensions: 52
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 20
length of query: 108
length of database: 2,899,336
effective HSP length: 84
effective length of query: 24
effective length of database: 1,790,704
effective search space: 42976896
effective search space used: 42976896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)