BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644837|ref|NP_207007.1| hypothetical protein
[Helicobacter pylori 26695]
(450 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta >g... 26 8.0
pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocyste... 26 8.0
pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi >... 26 8.0
pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltrans... 26 8.0
pdb|1FBI|P Chain P, Fab Fragment Of The Monoclonal Antibody... 26 8.0
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta >gi|5... 26 8.0
pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. T... 26 8.0
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 353 YNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQ 388
Y + I+A + VKN ++Q G TY P + SQ
Sbjct: 82 YQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 117
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 26.2 bits (56), Expect = 8.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 81 VGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTR 130
+GG G Y + + +E P+ GF P G W L H++ W R
Sbjct: 296 IGGCCGFEPYH-IRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVR 344
>pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/36 (30%), Positives = 17/36 (46%)
Query: 96 LMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTRE 131
L D ++GF P W WEG +++ TR+
Sbjct: 217 LWDTQESESGFTPILWAEYPHWEGEIIRFETEETRK 252
>pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/36 (30%), Positives = 17/36 (46%)
Query: 96 LMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTRE 131
L D ++GF P W WEG +++ TR+
Sbjct: 217 LWDTQESESGFTPILWAEYPHWEGEIIRFETEETRK 252
>pdb|1FBI|P Chain P, Fab Fragment Of The Monoclonal Antibody F9.13.7 (Igg1)
Complexed With Lysozyme (E.C.3.2.1.17)
pdb|1FBI|L Chain L, Fab Fragment Of The Monoclonal Antibody F9.13.7 (Igg1)
Complexed With Lysozyme (E.C.3.2.1.17)
Length = 214
Score = 26.2 bits (56), Expect = 8.0
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 1/73 (1%)
Query: 366 KSVKNLLVQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFT 425
++ +L L ++T S RA SQ + + KK + + Y +H G F
Sbjct: 6 QTTSSLSASLGDRVTISCRA-SQDISNYLNWYQKKPDGTVKLLIYYTSRLHSGVPSRFSG 64
Query: 426 SGYNPDFAQTIQN 438
SG D++ TI+N
Sbjct: 65 SGSGTDYSLTIRN 77
>pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
Length = 462
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 353 YNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQ 388
Y + I+A + VKN ++Q G TY P + SQ
Sbjct: 76 YQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 111
>pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
Length = 393
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/36 (30%), Positives = 17/36 (46%)
Query: 96 LMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTRE 131
L D ++GF P W WEG +++ TR+
Sbjct: 197 LWDTQESESGFTPILWAEYPHWEGEIIRFETEETRK 232
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,909,173
Number of Sequences: 13198
Number of extensions: 133546
Number of successful extensions: 386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 7
length of query: 450
length of database: 2,899,336
effective HSP length: 91
effective length of query: 359
effective length of database: 1,698,318
effective search space: 609696162
effective search space used: 609696162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)