BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644838|ref|NP_207008.1| chaperone and heat shock
protein C62.5 (htpG) [Helicobacter pylori 26695]
(621 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BYQ|A Chain A, Hsp90 N-Terminal Domain Bound To Adp-Mg... 182 1e-46
pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of T... 180 5e-46
pdb|1AMW| Adp Binding Site In The Hsp90 Molecular Chaperone 180 5e-46
pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The ... 180 5e-46
pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast... 180 5e-46
pdb|1AM1| Atp Binding Site In The Hsp90 Molecular Chaperone 178 2e-45
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex Wi... 31 0.36
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 31 0.47
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 31 0.47
pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domai... 30 0.61
pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Lik... 30 0.80
pdb|3HVT|B Chain B, Structure Of Immunodeficiency Virus Typ... 30 1.0
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 29 1.4
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase >gi|23... 29 1.4
pdb|1L41| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Rep... 29 1.8
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 29 1.8
pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campyloba... 29 1.8
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 28 2.3
pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transfe... 28 3.0
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransfe... 28 3.0
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 28 3.0
pdb|1QTH|A Chain A, The Introduction Of Strain And Its Effe... 28 4.0
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 27 5.2
pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal O... 27 5.2
pdb|2CAV|A Chain A, Canavalin From Jack Bean >gi|6729826|pd... 27 5.2
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 27 5.2
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 27 5.2
pdb|244L| The Response Of T4 Lysozyme To Large-To-Small S... 27 5.2
pdb|1CAU|A Chain A, Canavalin (Jack Bean 7s Vicilin) >gi|44... 27 5.2
pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regula... 27 6.7
pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT H... 27 6.7
pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex ... 27 6.7
pdb|1RT3|B Chain B, Azt Drug Resistant Hiv-1 Reverse Transc... 27 6.7
pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transc... 27 6.7
pdb|1LWC|B Chain B, Crystal Structure Of M184v Mutant Hiv-1... 27 6.7
pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo >gi|1065287|pdb|1HNI|... 27 6.7
pdb|1LWE|B Chain B, Crystal Structure Of M41lT215Y MUTANT H... 27 6.7
pdb|1UWB|B Chain B, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo 27 6.7
pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1... 27 6.7
pdb|1HYS|B Chain B, Crystal Structure Of Hiv-1 Reverse Tran... 27 6.7
pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Tran... 27 6.7
pdb|1IKX|B Chain B, K103n Mutant Hiv-1 Reverse Transcriptas... 27 6.7
pdb|1CUQ|A Chain A, T4 Lysozyme Mutant V103m 27 6.7
pdb|1HMV|A Chain A, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49) 27 6.7
pdb|1FK9|A Chain A, Crystal Structure Of Hiv-1 Reverse Tran... 27 6.7
pdb|1JLA|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1... 27 6.7
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1... 27 6.7
pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv... 27 6.7
pdb|1HMV|B Chain B, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49) 27 6.7
pdb|1RTJ|B Chain B, Hiv-1 Reverse Transcriptase Mol_id: 1; ... 27 6.7
pdb|1FKO|A Chain A, Crystal Structure Of Nnrti Resistant K1... 27 6.7
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 27 6.7
pdb|1IKW|B Chain B, Wild Type Hiv-1 Reverse Transcriptase I... 27 6.7
pdb|1HVU|B Chain B, Human Immunodeficiency Virus Type 1 Rev... 27 6.7
pdb|1BQN|B Chain B, Tyr 188 Leu Hiv-1 RtHBY 097 27 6.7
pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo 27 6.7
pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant O... 27 6.7
pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Rev... 27 6.7
pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1 >gi... 27 6.7
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 27 6.7
pdb|1LW0|B Chain B, Crystal Structure Of T215y Mutant Hiv-1... 27 6.7
pdb|1HNI|B Chain B, Human Immunodeficiency Virus Type 1 Rev... 27 6.7
pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Rev... 27 6.7
pdb|3HVT|A Chain A, Structure Of Immunodeficiency Virus Typ... 27 6.7
pdb|1QE1|B Chain B, Crystal Structure Of 3tc-Resistant M184... 27 6.7
pdb|1J5O|B Chain B, Crystal Structure Of Met184ile Mutant O... 27 6.7
pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1 >gi... 27 6.7
pdb|1F1E|A Chain A, Crystal Structure Of The Histone From M... 27 6.7
pdb|1HNV|B Chain B, Hiv-1 Reverse Transcriptase (Hiv-1 Rt) ... 27 6.7
pdb|1LWF|B Chain B, Crystal Structure Of A Mutant Hiv-1 Rev... 27 6.7
pdb|236L| The Response Of T4 Lysozyme To Large-To-Small S... 27 6.7
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 27 6.7
pdb|1FKP|B Chain B, Crystal Structure Of Nnrti Resistant K1... 27 6.7
pdb|1JW2|A Chain A, Solution Structure Of Hemolysin Express... 27 6.7
pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097 27 6.7
pdb|1JLE|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1... 27 6.7
pdb|1BQM|B Chain B, Hiv-1 RtHBY 097 >gi|3891819|pdb|2HMI|B ... 27 6.7
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 27 6.7
pdb|1RTH|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; ... 27 6.7
pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptas... 27 6.7
pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1... 27 6.7
pdb|1HQU|B Chain B, Human Immunodeficiency Virus Type 1 >gi... 27 6.7
pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase I... 27 6.7
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Tran... 27 6.7
pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1... 27 6.7
pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1... 27 6.7
pdb|1C1B|B Chain B, Crystal Structure Of Hiv-1 Reverse Tran... 27 6.7
pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain 27 8.8
pdb|123L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Repl... 27 8.8
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 27 8.8
pdb|1L93| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Repl... 27 8.8
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 27 8.8
pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calm... 27 8.8
pdb|1QS5|A Chain A, The Introduction Of Strain And Its Effe... 27 8.8
pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) ... 27 8.8
>pdb|1BYQ|A Chain A, Hsp90 N-Terminal Domain Bound To Adp-Mg
pdb|1YET| Geldanamycin Bound To The Hsp90 Geldanamycin-Binding Domain
pdb|1YES| Human Hsp90 Geldanamycin-Binding Domain, "open" Conformation
pdb|1YER| Human Hsp90 Geldanamycin-Binding Domain, "closed" Conformation
Length = 228
Score = 182 bits (462), Expect = 1e-46
Identities = 104/229 (45%), Positives = 142/229 (61%), Gaps = 12/229 (5%)
Query: 4 QEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNTTPS 63
+ + FQ EI QL+ L+I++ YSNKEIFLREL+SN+SDALDK+ Y LTD
Sbjct: 10 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELH 69
Query: 64 IHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSALIGQFG 123
I+L + Q +TLTI D GIGM K DLI +LGTIAKSGTK F+ AL D ++IGQFG
Sbjct: 70 INLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG--ADISMIGQFG 127
Query: 124 VGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE--QGTEITLFLKDED 181
VGFYSA++VA K+ V TK N D+ YAW S G F + + +GT++ L LK++
Sbjct: 128 VGFYSAYLVAEKVTVITKH-NDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQ 186
Query: 182 SHFASRWEIDSVVKKYSEHIPFPIFLTYTDTKHEGEGDNQKEIKEEKCE 230
+ + I +VKK+S+ I +PI L E + KE+ +++ E
Sbjct: 187 TEYLEERRIKEIVKKHSQFIGYPITLFV-------EKERDKEVSDDEAE 228
>pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH8|A Chain A, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH6| Structure Of The Tetragonal Form Of The N-Terminal Domain Of The
Yeast Hsp90 Chaperone
Length = 220
Score = 180 bits (456), Expect = 5e-46
Identities = 102/215 (47%), Positives = 143/215 (66%), Gaps = 10/215 (4%)
Query: 1 MSNQEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNT 60
M+++ + FQ EI QL+ L+I+++YSNKEIFLREL+SNASDALDK+ Y L+D K L T
Sbjct: 1 MASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDP--KQLET 58
Query: 61 TPS--IHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSAL 118
P I ++ ++K L I+D+GIGM K +LI +LGTIAKSGTK F+ ALS D ++
Sbjct: 59 EPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAG--ADVSM 116
Query: 119 IGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE---QGTEITL 175
IGQFGVGFYS F+VA ++ V +K N D+ Y W S+ G F ++ +E +GT + L
Sbjct: 117 IGQFGVGFYSLFLVADRVQVISKS-NDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRL 175
Query: 176 FLKDEDSHFASRWEIDSVVKKYSEHIPFPIFLTYT 210
FLKD+ + I V+K++SE + +PI L T
Sbjct: 176 FLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVT 210
>pdb|1AMW| Adp Binding Site In The Hsp90 Molecular Chaperone
Length = 214
Score = 180 bits (456), Expect = 5e-46
Identities = 102/215 (47%), Positives = 143/215 (66%), Gaps = 10/215 (4%)
Query: 1 MSNQEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNT 60
M+++ + FQ EI QL+ L+I+++YSNKEIFLREL+SNASDALDK+ Y L+D K L T
Sbjct: 1 MASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDP--KQLET 58
Query: 61 TPS--IHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSAL 118
P I ++ ++K L I+D+GIGM K +LI +LGTIAKSGTK F+ ALS D ++
Sbjct: 59 EPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAG--ADVSM 116
Query: 119 IGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE---QGTEITL 175
IGQFGVGFYS F+VA ++ V +K N D+ Y W S+ G F ++ +E +GT + L
Sbjct: 117 IGQFGVGFYSLFLVADRVQVISKS-NDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRL 175
Query: 176 FLKDEDSHFASRWEIDSVVKKYSEHIPFPIFLTYT 210
FLKD+ + I V+K++SE + +PI L T
Sbjct: 176 FLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVT 210
>pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The N-Terminal Domain
Of The Yeast Hsp90 Chaperone
Length = 225
Score = 180 bits (456), Expect = 5e-46
Identities = 102/215 (47%), Positives = 143/215 (66%), Gaps = 10/215 (4%)
Query: 1 MSNQEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNT 60
M+++ + FQ EI QL+ L+I+++YSNKEIFLREL+SNASDALDK+ Y L+D K L T
Sbjct: 12 MASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDP--KQLET 69
Query: 61 TPS--IHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSAL 118
P I ++ ++K L I+D+GIGM K +LI +LGTIAKSGTK F+ ALS D ++
Sbjct: 70 EPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAG--ADVSM 127
Query: 119 IGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE---QGTEITL 175
IGQFGVGFYS F+VA ++ V +K N D+ Y W S+ G F ++ +E +GT + L
Sbjct: 128 IGQFGVGFYSLFLVADRVQVISKS-NDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRL 186
Query: 176 FLKDEDSHFASRWEIDSVVKKYSEHIPFPIFLTYT 210
FLKD+ + I V+K++SE + +PI L T
Sbjct: 187 FLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVT 221
>pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone In
Complex With Geldanamycin
Length = 230
Score = 180 bits (456), Expect = 5e-46
Identities = 102/215 (47%), Positives = 143/215 (66%), Gaps = 10/215 (4%)
Query: 1 MSNQEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNT 60
M+++ + FQ EI QL+ L+I+++YSNKEIFLREL+SNASDALDK+ Y L+D K L T
Sbjct: 11 MASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDP--KQLET 68
Query: 61 TPS--IHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSAL 118
P I ++ ++K L I+D+GIGM K +LI +LGTIAKSGTK F+ ALS D ++
Sbjct: 69 EPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAG--ADVSM 126
Query: 119 IGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE---QGTEITL 175
IGQFGVGFYS F+VA ++ V +K N D+ Y W S+ G F ++ +E +GT + L
Sbjct: 127 IGQFGVGFYSLFLVADRVQVISKS-NDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRL 185
Query: 176 FLKDEDSHFASRWEIDSVVKKYSEHIPFPIFLTYT 210
FLKD+ + I V+K++SE + +PI L T
Sbjct: 186 FLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVT 220
>pdb|1AM1| Atp Binding Site In The Hsp90 Molecular Chaperone
Length = 213
Score = 178 bits (451), Expect = 2e-45
Identities = 101/214 (47%), Positives = 142/214 (66%), Gaps = 10/214 (4%)
Query: 2 SNQEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNTT 61
+++ + FQ EI QL+ L+I+++YSNKEIFLREL+SNASDALDK+ Y L+D K L T
Sbjct: 1 ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDP--KQLETE 58
Query: 62 PS--IHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSALI 119
P I ++ ++K L I+D+GIGM K +LI +LGTIAKSGTK F+ ALS D ++I
Sbjct: 59 PDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAG--ADVSMI 116
Query: 120 GQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE---QGTEITLF 176
GQFGVGFYS F+VA ++ V +K N D+ Y W S+ G F ++ +E +GT + LF
Sbjct: 117 GQFGVGFYSLFLVADRVQVISKS-NDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLF 175
Query: 177 LKDEDSHFASRWEIDSVVKKYSEHIPFPIFLTYT 210
LKD+ + I V+K++SE + +PI L T
Sbjct: 176 LKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVT 209
>pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
Length = 209
Score = 31.2 bits (69), Expect = 0.36
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 86 KNDLIEHLGTIAKSGTK---NFLSALSGDKKKDSALIGQFGVGFYSAF--MVASKIVVQT 140
+ + IE G I K TK +FL++ G ++ S ++G+ S + ++
Sbjct: 110 RREAIEEAGLIVKR-TKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRV 168
Query: 141 KKVNSDQAYAWVSDGK 156
V+ +QAY WV +GK
Sbjct: 169 HVVSREQAYQWVEEGK 184
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 30.8 bits (68), Expect = 0.47
Identities = 46/204 (22%), Positives = 84/204 (40%), Gaps = 8/204 (3%)
Query: 407 YSKDKEKLISLKEYKENLKENQKSIYYLLGENL-DLLKASPLLEKYAQKGYDVLLLSDEI 465
+S D + + E LKE +S+ G L D L ++E+ + + + +
Sbjct: 32 FSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEIL 91
Query: 466 DAFVMPGVNEYDKTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVE 525
D N D A L++ G I E+ +F+D F+E+L ++ G+
Sbjct: 92 DQIYNQNSNCNDLCT--SALQFRLLRQHGFN-ISPEIFSKFQDENGKFKESLASDVLGL- 147
Query: 526 LSSHLTSAVALIGDE--QNAMMANWMRQMGQSVPESKKTLELNPNHAILQKLLKCEDKEQ 583
L+ + S V D+ ++A+ + + + + P K L HA+ Q L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIH-LESAAPHLKSPLREQVTHALEQCLHKGVPRVE 206
Query: 584 LSAFIWLLYDGAKLLEKGALKDAK 607
FI +YD + L+ AK
Sbjct: 207 TRFFISSIYDKEQSKNNVLLRFAK 230
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 30.8 bits (68), Expect = 0.47
Identities = 46/204 (22%), Positives = 84/204 (40%), Gaps = 8/204 (3%)
Query: 407 YSKDKEKLISLKEYKENLKENQKSIYYLLGENL-DLLKASPLLEKYAQKGYDVLLLSDEI 465
+S D + + E LKE +S+ G L D L ++E+ + + + +
Sbjct: 32 FSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEIL 91
Query: 466 DAFVMPGVNEYDKTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVE 525
D N D A L++ G I E+ +F+D F+E+L ++ G+
Sbjct: 92 DQIYNQNSNCNDLCT--SALQFRLLRQHGFN-ISPEIFSKFQDENGKFKESLASDVLGL- 147
Query: 526 LSSHLTSAVALIGDE--QNAMMANWMRQMGQSVPESKKTLELNPNHAILQKLLKCEDKEQ 583
L+ + S V D+ ++A+ + + + + P K L HA+ Q L K + +
Sbjct: 148 LNLYEASHVRTHADDILEDALAFSTIH-LESAAPHLKSPLREQVTHALEQCLHKGVPRVE 206
Query: 584 LSAFIWLLYDGAKLLEKGALKDAK 607
FI +YD + L+ AK
Sbjct: 207 TRFFISSIYDKEQSKNNVLLRFAK 230
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
pdb|1MI1|B Chain B, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
Length = 414
Score = 30.4 bits (67), Expect = 0.61
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 15/111 (13%)
Query: 251 YKEFYQSFAHDNSEPLSYIHNKVEGSLEYTTLFYIPSTAPFDMFRVDYKSGVKLYVKRVF 310
Y E Y+++ D S P Y S +TL ++ PF F ++ G + R F
Sbjct: 209 YAERYETWEDDQSPPYHY---NTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTF 265
Query: 311 I------------TDDDKELLPSYLRFVKGVIDSEDLPLNVSREILQQNKI 349
T D KEL+P + + ++S L V + + N +
Sbjct: 266 SSVARSWRTSQRDTSDVKELIPEFYYLPEXFVNSNGYNLGVREDEVVVNDV 316
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 30.0 bits (66), Expect = 0.80
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 352 NIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDK 411
N A ++ ++SEI+R ++ +F + +K D +N+E++ E R + KD
Sbjct: 42 NPTEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMK-----DTDNEEEIREAFRVFDKDG 96
Query: 412 EKLISLKEYK 421
+S E +
Sbjct: 97 NGFVSAAELR 106
>pdb|3HVT|B Chain B, Structure Of Immunodeficiency Virus Type 1 Reverse
Transcriptase Heterodimer
Length = 398
Score = 29.6 bits (65), Expect = 1.0
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 3/75 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 272 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 328
Query: 391 YGDFENKEKLLELLR 405
Y + ++L E ++
Sbjct: 329 YAHTNDVKQLTEAVQ 343
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 29.3 bits (64), Expect = 1.4
Identities = 39/165 (23%), Positives = 66/165 (39%), Gaps = 22/165 (13%)
Query: 417 LKEYKENLKENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEY 476
++EY NL + K + L G + D + + K L E + P + E
Sbjct: 205 VREYFSNLDRHLKIFHSLQGNDKDYIDLA--FSKKKADDRKEWLRQYEPGTVLDPTLKEI 262
Query: 477 DKTPFKDASHSESLKELGLEEIHDEVKD-----------QFKDLMKAFEENLKDEIKGVE 525
+ F + KEL L + D ++ Q K L F++NLK E+K +
Sbjct: 263 PISDFIN-------KELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQ 315
Query: 526 LSSHLTSAVALIGDEQNAMMANWMRQMGQSVPESKKTLELNPNHA 570
L+ +++ A EQ+ +A + + Q+ S L PN A
Sbjct: 316 LAPYVSECTAYHHGEQS--LAQTIIGLAQNFVGSNNIYLLLPNGA 358
>pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 29.3 bits (64), Expect = 1.4
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 424 LKENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKD 483
L +QK Y L N + K + Y G+ + + S I ++ +N+ + +
Sbjct: 121 LMGHQKGEYQYLNPNDHVNKCQSTNDAYPT-GFRIAVYSSLIK--LVDAINQLREGFERK 177
Query: 484 ASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVAL 536
A + + ++G ++ D V +AF LK+E+K ++ ++ L V L
Sbjct: 178 AVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNL 230
>pdb|1L41| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Replaced By Thr, Lys
83 Replaced By His, Cys 97 Replaced By Ala, Ala 112
Replaced By Asp) (C54T,K83H,C97A,A112D)
Length = 164
Score = 28.9 bits (63), Expect = 1.8
Identities = 19/78 (24%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ ++HL +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNAHLKPVYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ A + N + QMG++
Sbjct: 92 DAVRRAALINMVFQMGET 109
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 28.9 bits (63), Expect = 1.8
Identities = 44/189 (23%), Positives = 78/189 (40%), Gaps = 8/189 (4%)
Query: 422 ENLKENQKSIYYLLGENL-DLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTP 480
E LKE +++ G L D L +E+ + + D +D N D
Sbjct: 47 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCT 106
Query: 481 FKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALIGDE 540
A L++ G I E+ +F+D F+E+L ++ G+ L+ + S V D+
Sbjct: 107 --SALQFRLLRQHGFN-ISPEIFSKFQDENGKFKESLASDVLGL-LNLYEASHVRTHADD 162
Query: 541 --QNAMMANWMRQMGQSVPESKKTLELNPNHAILQKLLKCEDKEQLSAFIWLLYDGAKLL 598
++A+ + + + + P K L HA+ Q L K + + FI +YD +
Sbjct: 163 ILEDALAFSTIH-LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 221
Query: 599 EKGALKDAK 607
L+ AK
Sbjct: 222 NNVLLRFAK 230
>pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campylobacter Jejuni
Ferritin
Length = 167
Score = 28.9 bits (63), Expect = 1.8
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 87 NDLIEHLGTIAKSGTKNFLSALSGDKKKDSA----------LIGQFGVGFYSAFMVASKI 136
N L+EH+ T T NFL ++ ++ A LIG+ G G Y A I
Sbjct: 102 NTLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKNI 161
Query: 137 VVQTKK 142
+ KK
Sbjct: 162 ALSRKK 167
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 28.5 bits (62), Expect = 2.3
Identities = 49/202 (24%), Positives = 85/202 (41%), Gaps = 30/202 (14%)
Query: 365 IERLSKDEKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKEKLISLKEYKENL 424
++ L+ EK Y+ + K G F N +K RF K I+ E +
Sbjct: 1 MKELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDK-----RFAYASTSKAINSAILLEQV 54
Query: 425 KENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDA 484
N+ + + ++ D++ SP+LEKY K + L I+A + N + K+
Sbjct: 55 PYNKLNKKVHINKD-DIVAYSPILEKYVGKD---ITLKALIEASMTYSDNTANNKIIKEI 110
Query: 485 SHSESLKELGLEEIHDEVKDQFK---DLMKAFEENLKDEIKGVELSSHLTSAVALIGDEQ 541
+ +K+ L+E+ D+V + + +LM ++ KD TS A G
Sbjct: 111 GGIKKVKQ-RLKELGDKVTNPVRYEIELMYYSPKSKKD-----------TSTPAAFGKTL 158
Query: 542 NAMMANWMRQMGQSVPESKKTL 563
N ++AN G+ E+KK L
Sbjct: 159 NKLIAN-----GKLSKENKKFL 175
>pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|B Chain B, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|C Chain C, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|D Chain D, M. Smegmatis Arylamine N-Acetyl Transferase
Length = 284
Score = 28.1 bits (61), Expect = 3.0
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 6 YTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDE---KLKGLNTT- 61
YTF TE +DL + S Y + S + L ++TD+ L+G N
Sbjct: 186 YTFTTEPRPRIDLEVGSWYVSTH--------PGSHFVTGLTVAVVTDDARYNLRGRNLAV 237
Query: 62 ----PSIHLSFDSQKKTLTIKDNGIGMDKNDL 89
+ H+ FDS + L N G+D DL
Sbjct: 238 HRSGATEHIRFDSAAQVLDAIVNRFGIDLGDL 269
>pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
Length = 244
Score = 28.1 bits (61), Expect = 3.0
Identities = 14/47 (29%), Positives = 26/47 (54%)
Query: 468 FVMPGVNEYDKTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFE 514
FVM VN+ K F + SLK G++++++ +QF L +++
Sbjct: 194 FVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNNISFEQFLSLFNSYK 240
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 28.1 bits (61), Expect = 3.0
Identities = 54/220 (24%), Positives = 91/220 (40%), Gaps = 38/220 (17%)
Query: 355 SASVKKILSEIERLSKD--------EKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRF 406
S + K ++ E SK+ EK Y+ + K G F N +K RF
Sbjct: 28 SETAKSVMKEFAAGSKNAAKELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDK-----RF 81
Query: 407 YSKDKEKLISLKEYKENLKENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEID 466
K I+ E + N+ + + ++ D++ SP+LEKY G D+ L
Sbjct: 82 AYASTSKAINSAILLEQVPYNKLNKKVHINKD-DIVAYSPILEKYV--GKDITL-----K 133
Query: 467 AFVMPGVNEYDKTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIK---G 523
A + + D T ++++ +KE+G + +VK + K+L ++ EI+
Sbjct: 134 ALIEASMTYSDNT-----ANNKIIKEIGGIK---KVKQRLKELGDKVTNPVRYEIELNYY 185
Query: 524 VELSSHLTSAVALIGDEQNAMMANWMRQMGQSVPESKKTL 563
S TS A G N ++AN G+ E+KK L
Sbjct: 186 SPKSKKDTSTPAAFGKTLNKLIAN-----GKLSKENKKFL 220
>pdb|1QTH|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
pdb|1QTH|B Chain B, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 4.0
Identities = 19/78 (24%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ ++ L +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNAKLKPVYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ AM+ N + QMG++
Sbjct: 92 DAVRRAMLINMVFQMGET 109
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 27.3 bits (59), Expect = 5.2
Identities = 50/202 (24%), Positives = 86/202 (41%), Gaps = 30/202 (14%)
Query: 365 IERLSKDEKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKEKLISLKEYKENL 424
++ L+ EK Y+ + K G F N +K RF K I+ E +
Sbjct: 1 MKELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDK-----RFAYASTSKAINSAILLEQV 54
Query: 425 KENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDA 484
N+ + + ++ D++ SP+LEKY G D+ L A + + D T
Sbjct: 55 PYNKLNKKVHINKD-DIVAYSPILEKYV--GKDITL-----KALIEASMTYSDNT----- 101
Query: 485 SHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIK---GVELSSHLTSAVALIGDEQ 541
++++ +KE+G + +VK + K+L ++ EI+ S TS A G
Sbjct: 102 ANNKIIKEIGGIK---KVKQRLKELGDKVTNPVRYEIELQYYSPKSKKDTSTPAAFGKTL 158
Query: 542 NAMMANWMRQMGQSVPESKKTL 563
N ++AN G+ E+KK L
Sbjct: 159 NKLIAN-----GKLSKENKKFL 175
>pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|B Chain B, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|C Chain C, Refined Crystal Structure Of Canavalin From Jack Bean
Length = 178
Score = 27.3 bits (59), Expect = 5.2
Identities = 11/28 (39%), Positives = 21/28 (74%)
Query: 394 FENKEKLLELLRFYSKDKEKLISLKEYK 421
F+N+ L LL+ +++D EKL +L++Y+
Sbjct: 15 FKNQHGSLRLLQRFNEDTEKLENLRDYR 42
>pdb|2CAV|A Chain A, Canavalin From Jack Bean
pdb|2CAU|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 27.3 bits (59), Expect = 5.2
Identities = 11/28 (39%), Positives = 21/28 (74%)
Query: 394 FENKEKLLELLRFYSKDKEKLISLKEYK 421
F+N+ L LL+ +++D EKL +L++Y+
Sbjct: 60 FKNQHGSLRLLQRFNEDTEKLENLRDYR 87
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 27.3 bits (59), Expect = 5.2
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 440 DLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDASHSESLKELGLEEIH 499
D++ SP+LEKY G D+ L A + + D T ++++ +KE+G +
Sbjct: 68 DIVAYSPILEKYV--GKDITL-----KALIEASMTYSDNT-----ANNKIIKEIGGIK-- 113
Query: 500 DEVKDQFKDLMKAFEENLKDEIK---GVELSSHLTSAVALIGDEQNAMMANWMRQMGQSV 556
+VK + K+L ++ EI+ S TS A G N ++AN G+
Sbjct: 114 -KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKNTSTPAAFGKTLNKLIAN-----GKLS 167
Query: 557 PESKKTL 563
E+KK L
Sbjct: 168 KENKKFL 174
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 27.3 bits (59), Expect = 5.2
Identities = 50/202 (24%), Positives = 86/202 (41%), Gaps = 30/202 (14%)
Query: 365 IERLSKDEKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKEKLISLKEYKENL 424
++ L+ EK Y+ + K G F N +K RF K I+ E +
Sbjct: 1 MKELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDK-----RFAYASTSKAINSAILLEQV 54
Query: 425 KENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDA 484
N+ + + ++ D++ SP+LEKY G D+ L A + + D T
Sbjct: 55 PYNKLNKKVHINKD-DIVAYSPILEKYV--GKDITL-----KALIEASMTYSDNT----- 101
Query: 485 SHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIK---GVELSSHLTSAVALIGDEQ 541
++++ +KE+G + +VK + K+L ++ EI+ S TS A G
Sbjct: 102 ANNKIIKEIGGIK---KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTL 158
Query: 542 NAMMANWMRQMGQSVPESKKTL 563
N ++AN G+ E+KK L
Sbjct: 159 NKLIAN-----GKLSKENKKFL 175
>pdb|244L| The Response Of T4 Lysozyme To Large-To-Small Substitutions Within
The Core And Its Relation To The Hydrophobic Effect
Length = 164
Score = 27.3 bits (59), Expect = 5.2
Identities = 19/78 (24%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ ++ L +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNAKLKPVYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ A +AN + QMG++
Sbjct: 92 DAVRRAALANMVFQMGET 109
>pdb|1CAU|A Chain A, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAX|A Chain A, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAX|C Chain C, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAX|E Chain E, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAV|A Chain A, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAW|A Chain A, Canavalin (Jack Bean 7s Vicilin)
Length = 181
Score = 27.3 bits (59), Expect = 5.2
Identities = 11/28 (39%), Positives = 21/28 (74%)
Query: 394 FENKEKLLELLRFYSKDKEKLISLKEYK 421
F+N+ L LL+ +++D EKL +L++Y+
Sbjct: 17 FKNQHGSLRLLQRFNEDTEKLENLRDYR 44
>pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|B Chain B, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|C Chain C, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|D Chain D, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
Length = 84
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 392 GDFENKEKLLELLRFYSKDKEKLISLKEYKEN 423
G F +E+ E F ++ KE+L +LK++KEN
Sbjct: 20 GAFGKREQAEEERYFRARAKEQLAALKKHKEN 51
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
Length = 557
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1RT3|B Chain B, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1LWC|B Chain B, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo
pdb|1HNI|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
(Hiv-1rt) (E.C.2.7.7.49) Mutant With Cys 280 Replaced By
Ser (C280s)
pdb|1HNV|A Chain A, Hiv-1 Reverse Transcriptase (Hiv-1 Rt) (E.C.2.7.7.49)
Mutant With Cys 280 Replaced By Ser (C280s)
pdb|2HMI|A Chain A, Hiv-1 Reverse Transcriptase Complexed With A
Double-Stranded Dna And Fab28
Length = 558
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1LWE|B Chain B, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1UWB|B Chain B, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 427
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HYS|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 425
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 553
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1IKX|B Chain B, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|B Chain B, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
pdb|1IKV|B Chain B, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
Length = 427
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1CUQ|A Chain A, T4 Lysozyme Mutant V103m
Length = 164
Score = 26.9 bits (58), Expect = 6.7
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ ++ L +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNAKLKPVYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ A + N M QMG++
Sbjct: 92 DAVRRAALINMMFQMGET 109
>pdb|1HMV|A Chain A, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49)
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1FK9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Dmp-266(Efavirenz)
Length = 543
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1JLA|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
pdb|1JKH|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HMV|B Chain B, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49)
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1RTJ|B Chain B, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1RTH|B Chain B, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1C1C|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1RT1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1RT7|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1C0U|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1RT6|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RTD|B Chain B, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|D Chain D, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTI|B Chain B, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1REV|B Chain B, Hiv-1 Reverse Transcriptase
pdb|1DTT|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1VRU|B Chain B, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1RT5|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1KLM|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1JLQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1RT4|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1FK9|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Dmp-266(Efavirenz)
pdb|1RT2|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1DTQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1VRT|B Chain B, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1EP4|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1C0T|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1FKO|A Chain A, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1FKP|A Chain A, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Nevirapine
Length = 543
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 26.9 bits (58), Expect = 6.7
Identities = 39/163 (23%), Positives = 69/163 (41%), Gaps = 11/163 (6%)
Query: 365 IERLSKDEKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKEKLISLKEYKENL 424
++ L+ EK Y+ + K G F N +K RF K I+ E +
Sbjct: 1 MKELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDK-----RFAYASTSKAINSAILLEQV 54
Query: 425 KENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDA 484
N+ + + ++ D++ SP+LEKY K + L I+A + N + K+
Sbjct: 55 PYNKLNKKVHINKD-DIVAYSPILEKYVGKD---ITLKALIEASMTYSDNTANNKIIKEI 110
Query: 485 SHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELS 527
+ +K+ L+E+ D+V + AF + L I +LS
Sbjct: 111 GGIKKVKQ-RLKELGDKVTNPDTSTPAAFGKTLNKLIANGKLS 152
>pdb|1IKW|B Chain B, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
pdb|1EET|B Chain B, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
Length = 427
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HVU|B Chain B, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|E Chain E, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|H Chain H, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|K Chain K, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 423
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 293 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 349
Query: 391 Y 391
Y
Sbjct: 350 Y 350
>pdb|1BQN|B Chain B, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 430
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 558
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
pdb|1QE1|A Chain A, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
Length = 558
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(Rtmq+m184v: M41lD67NK70RM184VT215Y) IN COMPLEX WITH
Nevirapine
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1BQM|A Chain A, Hiv-1 RtHBY 097
Length = 556
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 26.9 bits (58), Expect = 6.7
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 440 DLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDASHSESLKELGLEEIH 499
D++ SP+LEKY G D+ L A + + D T ++++ +KE+G +
Sbjct: 68 DIVAYSPILEKYV--GKDITL-----KALIEASMTYSDNT-----ANNKIIKEIGGIK-- 113
Query: 500 DEVKDQFKDLMKAFEENLKDEIK---GVELSSHLTSAVALIGDEQNAMMANWMRQMGQSV 556
+VK + K+L ++ EI+ S TS A G N ++AN G+
Sbjct: 114 -KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIAN-----GKLS 167
Query: 557 PESKKTL 563
E+KK L
Sbjct: 168 KENKKFL 174
>pdb|1LW0|B Chain B, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|B Chain B, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HNI|B Chain B, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
(Hiv-1rt) (E.C.2.7.7.49) Mutant With Cys 280 Replaced By
Ser (C280s)
Length = 427
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|D Chain D, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|G Chain G, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|J Chain J, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 554
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|3HVT|A Chain A, Structure Of Immunodeficiency Virus Type 1 Reverse
Transcriptase Heterodimer
Length = 556
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1QE1|B Chain B, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
Length = 427
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1J5O|B Chain B, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 430
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 26.9 bits (58), Expect = 6.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 466 DAFVMPGVNEYDKTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDE 520
D + GV +YD F A+ LK G+E + D + L+ E L ++
Sbjct: 68 DVLXVEGVEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEK 122
>pdb|1HNV|B Chain B, Hiv-1 Reverse Transcriptase (Hiv-1 Rt) (E.C.2.7.7.49)
Mutant With Cys 280 Replaced By Ser (C280s)
pdb|1TVR|B Chain B, Hiv-1 Rt9-Cl Tibo
pdb|1DLO|B Chain B, Human Immunodeficiency Virus Type 1
Length = 427
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1LWF|B Chain B, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(Rtmq+m184v: M41lD67NK70RM184VT215Y) IN COMPLEX WITH
Nevirapine
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|236L| The Response Of T4 Lysozyme To Large-To-Small Substitutions Within
The Core And Its Relation To The Hydrophobic Effect
Length = 164
Score = 26.9 bits (58), Expect = 6.7
Identities = 19/78 (24%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ ++ L A +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNAKLKPAYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ A + N + QMG++
Sbjct: 92 DAVRRAALINMVFQMGET 109
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 26.9 bits (58), Expect = 6.7
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 440 DLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDASHSESLKELGLEEIH 499
D++ SP+LEKY G D+ L A + + D T ++++ +KE+G +
Sbjct: 69 DIVAYSPILEKYV--GKDITL-----KALIEASMTYSDNT-----ANNKIIKEIGGIK-- 114
Query: 500 DEVKDQFKDLMKAFEENLKDEIK---GVELSSHLTSAVALIGDEQNAMMANWMRQMGQSV 556
+VK + K+L ++ EI+ S TS A G N ++AN G+
Sbjct: 115 -KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIAN-----GKLS 168
Query: 557 PESKKTL 563
E+KK L
Sbjct: 169 KENKKFL 175
>pdb|1FKP|B Chain B, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Nevirapine
pdb|1FKO|B Chain B, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Dmp-266(Efavirenz)
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1JW2|A Chain A, Solution Structure Of Hemolysin Expression Modulating
Protein Hha From Escherichia Coli
Length = 72
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 228 KCEQINQASALWKMNKSELKDKDYKEFYQSFAHDNSE-PLSYIHNKVEGSL 277
+C+ I+ + + NK EL D + FY + H +E ++ +++K+ S+
Sbjct: 17 RCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSV 67
>pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 558
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1JLE|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLG|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1JLF|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1BQM|B Chain B, Hiv-1 RtHBY 097
pdb|2HMI|B Chain B, Hiv-1 Reverse Transcriptase Complexed With A
Double-Stranded Dna And Fab28
Length = 430
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 26.9 bits (58), Expect = 6.7
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 440 DLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDASHSESLKELGLEEIH 499
D++ SP+LEKY G D+ L A + + D T ++++ +KE+G +
Sbjct: 68 DIVAYSPILEKYV--GKDITL-----KALIEASMTYSDNT-----ANNKIIKEIGGIK-- 113
Query: 500 DEVKDQFKDLMKAFEENLKDEIK---GVELSSHLTSAVALIGDEQNAMMANWMRQMGQSV 556
+VK + K+L ++ EI+ S TS A G N ++AN G+
Sbjct: 114 -KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIAN-----GKLS 167
Query: 557 PESKKTL 563
E+KK L
Sbjct: 168 KENKKFL 174
>pdb|1RTH|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1RTJ|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1RTI|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1VRU|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1VRT|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1HQU|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1HPZ|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1HQE|B Chain B, Human Immunodeficiency Virus Type 1
Length = 430
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1C1B|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
Length = 440
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 331 DSEDLPLNVSREILQQNKILANIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGL 390
+ +L L +REIL++ + + K +++EI++ + + Y + EPF K LK G
Sbjct: 297 EEAELELAENREILKEP--VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGK 353
Query: 391 Y 391
Y
Sbjct: 354 Y 354
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 26.6 bits (57), Expect = 8.8
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 502 VKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALIGDEQNAMMANWMRQMGQSVPESKK 561
+K F D AF E +KD +K ++ +T D+ A ++ G +
Sbjct: 9 IKQIFPD--DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 66
Query: 562 TLELNPNHAILQKLLKCEDKEQLSAFIWLLYDGAKLLEKGALKDAK 607
L LN N KL + L WL D K+ + +LKD K
Sbjct: 67 KLFLNGN-----KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLK 107
>pdb|123L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Thr, Ala 82
Replaced By Ser, Cys 97 Replaced By Ala (C54t,A82s,
C97a)
Length = 164
Score = 26.6 bits (57), Expect = 8.8
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ +S L +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNSKLKPVYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ A + N + QMG++
Sbjct: 92 DAVRRAALINMVFQMGET 109
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 26.6 bits (57), Expect = 8.8
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 502 VKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALIGDEQNAMMANWMRQMGQSVPESKK 561
+K F D AF E +KD +K ++ +T D+ A ++ G +
Sbjct: 11 IKQIFPD--DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 68
Query: 562 TLELNPNHAILQKLLKCEDKEQLSAFIWLLYDGAKLLEKGALKDAK 607
L LN N KL + L WL D K+ + +LKD K
Sbjct: 69 KLFLNGN-----KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLK 109
>pdb|1L93| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Thr, Cys 97
Replaced By Ala, Leu 99 Replaced By Met (C54t,C97a,
L99m)
Length = 164
Score = 26.6 bits (57), Expect = 8.8
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ ++ L +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNAKLKPVYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ A M N + QMG++
Sbjct: 92 DAVRRAAMINMVFQMGET 109
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 26.6 bits (57), Expect = 8.8
Identities = 48/202 (23%), Positives = 84/202 (40%), Gaps = 30/202 (14%)
Query: 365 IERLSKDEKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKEKLISLKEYKENL 424
++ L+ EK Y+ + K G F N +K RF K I+ E +
Sbjct: 1 MKELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDK-----RFAYASTSKAINSAILLEQV 54
Query: 425 KENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFKDA 484
N+ + + ++ D++ SP+LEKY K + L I+A + N + K+
Sbjct: 55 PYNKLNKKVHINKD-DIVAYSPILEKYVGKD---ITLKALIEASMTYSDNTANNKIIKEI 110
Query: 485 SHSESLKELGLEEIHDEVKDQFK---DLMKAFEENLKDEIKGVELSSHLTSAVALIGDEQ 541
+ +K+ L+E+ D+V + + +L ++ KD TS A G
Sbjct: 111 GGIKKVKQ-RLKELGDKVTNPVRYDIELQYYSPKSKKD-----------TSTPAAFGKTL 158
Query: 542 NAMMANWMRQMGQSVPESKKTL 563
N ++AN G+ E+KK L
Sbjct: 159 NKLIAN-----GKLSKENKKFL 175
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 26.6 bits (57), Expect = 8.8
Identities = 16/70 (22%), Positives = 33/70 (46%), Gaps = 5/70 (7%)
Query: 352 NIRSASVKKILSEIERLSKDEKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDK 411
N A ++ +++E++ ++ +F + +K D +++EKL E R + KD
Sbjct: 42 NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK-----DTDSEEKLKEAFRVFDKDG 96
Query: 412 EKLISLKEYK 421
IS E +
Sbjct: 97 NGFISAAELR 106
>pdb|1QS5|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 26.6 bits (57), Expect = 8.8
Identities = 18/78 (23%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Query: 478 KTPFKDASHSESLKELGLEEIHDEVKDQFKDLMKAFEENLKDEIKGVELSSHLTSAVALI 537
K+P +A+ SE K +G KD+ + K F +++ ++G+ ++ L +
Sbjct: 35 KSPSLNAAKSELDKAIGRNTNGVITKDEAE---KLFNQDVDAAVRGILRNAKLKPVYDSL 91
Query: 538 GDEQNAMMANWMRQMGQS 555
+ A++ N + QMG++
Sbjct: 92 DAVRRALLINMVFQMGET 109
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
Length = 402
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 521 IKGVELSSHLTSAVALIG--DEQNAMMANWMRQMGQSVPESKKTLELNPNHAILQKL 575
IKG+ + + A G E ++A W+ MG +P + ++ P HA ++L
Sbjct: 329 IKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQL 385
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,620,214
Number of Sequences: 13198
Number of extensions: 163208
Number of successful extensions: 535
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 96
length of query: 621
length of database: 2,899,336
effective HSP length: 94
effective length of query: 527
effective length of database: 1,658,724
effective search space: 874147548
effective search space used: 874147548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)