BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644839|ref|NP_207009.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(250 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Prote... 113 2e-26
pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt S... 33 0.031
pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Hu... 33 0.031
pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum ... 28 0.77
pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum ... 28 0.77
pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX 28 1.0
pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox... 28 1.0
pdb|1AKN| Structure Of Bile-Salt Activated Lipase 28 1.3
pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt A... 28 1.3
pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain O... 27 2.9
pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound G... 26 3.8
pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 26 5.0
pdb|1ITK|A Chain A, Crystal Structure Of Catalase-Peroxidas... 25 6.5
pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From ... 25 6.5
pdb|1FT5|A Chain A, Crystal Structure Of The Oxidized State... 25 8.5
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 113 bits (283), Expect = 2e-26
Identities = 56/131 (42%), Positives = 79/131 (59%), Gaps = 6/131 (4%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K+D +A ++ KACEL FGC+ L + + K +K Q+ +K CELN G GC
Sbjct: 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
LG+ Y NG+ V KD +KA+QYYSKAC LN +GC++LG + G G K+ ++A+ +E
Sbjct: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
Query: 162 KACDLKDSPGC 172
KAC L C
Sbjct: 122 KACRLGSEDAC 132
Score = 109 bits (272), Expect = 3e-25
Identities = 62/136 (45%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 74 GKGVGKDLKKAIQFYTKGCELNDGYGC-NLLGNLYYNGQGVSKDAKKASQYYSKACDLNH 132
G V KDLKKAIQ+Y K CELN+ +GC +L+ N N Q K QY SKAC+LN
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56
Query: 133 AEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEA 188
GC LG + G KDLRKA Y KAC L D GC+ GY V KN K+A
Sbjct: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
Query: 189 IVRYSKACELKDGRGC 204
+ + KAC L C
Sbjct: 117 VKTFEKACRLGSEDAC 132
Score = 99.0 bits (245), Expect = 5e-22
Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 110 GQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDS 169
G V KD KKA QYY KAC+LN GC+ L S + + +K KAC+L
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
Query: 170 PGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAV 225
GC G Y V K+ ++A YSKAC L D GC LG QY +G K+EKQAV
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 226 ENFKKGCKSSVKEACDAL 243
+ F+K C+ ++AC L
Sbjct: 118 KTFEKACRLGSEDACGIL 135
Score = 96.7 bits (239), Expect = 2e-21
Identities = 46/91 (50%), Positives = 60/91 (65%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+ KACEL +G GC FLG FYE GK V KDL+KA Q+Y+K C LND GC +LG Y G
Sbjct: 47 YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
+GV K+ K+A + + KAC L + C +L +
Sbjct: 107 KGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
Score = 51.2 bits (121), Expect = 1e-07
Identities = 24/64 (37%), Positives = 36/64 (55%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K+D +A ++ KAC L + GC+ LG GKGV K+ K+A++ + K C L C
Sbjct: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133
Query: 102 LLGN 105
+L N
Sbjct: 134 ILNN 137
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 33.1 bits (74), Expect = 0.031
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 64 CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
C++L + +G K V +DL I Y + G+G N L N Y+G+ ++
Sbjct: 80 CLYLNIWVPQGRKQVSRDLPVMIWIYGGAFLMGSGHGANFLNNYLYDGEEIA 131
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 33.1 bits (74), Expect = 0.031
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 64 CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
C++L + +G K V +DL I Y + G+G N L N Y+G+ ++
Sbjct: 80 CLYLNIWVPQGRKQVSRDLPVMIWIYGGAFLMGSGHGANFLNNYLYDGEEIA 131
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 28.5 bits (62), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Query: 160 YEKACDLKDSPGCINAGYI-YSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
Y++ ++ + NA Y Y ++K+ KEAIV Y+K+ +G+ N GV+
Sbjct: 6 YQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLI 65
Query: 219 KDEKQAVENFKK 230
K + ++F K
Sbjct: 66 KQVELLDKSFNK 77
Score = 26.6 bits (57), Expect = 2.9
Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 4/67 (5%)
Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
GN Y G+SK K+A Y+K+ + + G ++ G P +L K ++L +K+
Sbjct: 19 GNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVIN----GFPSNLIKQVELLDKS 74
Query: 164 CDLKDSP 170
+ +P
Sbjct: 75 FNKMKTP 81
>pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1GZF|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1GZF|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1GZF|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme
(Wild-Type) In Complex With Nad
pdb|1G24|A Chain A, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|B Chain B, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|C Chain C, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|D Chain D, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
Length = 211
Score = 28.5 bits (62), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Query: 160 YEKACDLKDSPGCINAGYI-YSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
Y++ ++ + NA Y Y ++K+ KEAIV Y+K+ +G+ N GV+
Sbjct: 6 YQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLI 65
Query: 219 KDEKQAVENFKK 230
K + ++F K
Sbjct: 66 KQVELLDKSFNK 77
Score = 26.6 bits (57), Expect = 2.9
Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 4/67 (5%)
Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
GN Y G+SK K+A Y+K+ + + G ++ G P +L K ++L +K+
Sbjct: 19 GNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVIN----GFPSNLIKQVELLDKS 74
Query: 164 CDLKDSP 170
+ +P
Sbjct: 75 FNKMKTP 81
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 28.1 bits (61), Expect = 1.0
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
KD + ALD + D S C N G +Y++ KN EA ++++
Sbjct: 20 KDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN------------- 65
Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEACD-ALKELK 247
+D+ AV F++G E D A+K+LK
Sbjct: 66 --------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 28.1 bits (61), Expect = 1.0
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
KD + ALD + D S C N G +Y++ KN EA ++++
Sbjct: 20 KDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN------------- 65
Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEACD-ALKELK 247
+D+ AV F++G E D A+K+LK
Sbjct: 66 --------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95
>pdb|1AKN| Structure Of Bile-Salt Activated Lipase
Length = 579
Score = 27.7 bits (60), Expect = 1.3
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 64 CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
C++L + +G K V DL I Y + G N L N Y+G+ ++
Sbjct: 80 CLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIA 131
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 27.7 bits (60), Expect = 1.3
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 64 CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
C++L + +G K V DL I Y + G N L N Y+G+ ++
Sbjct: 80 CLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIA 131
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain Of Hop In Complex
With The Hsp90-Peptide Meevd
Length = 131
Score = 26.6 bits (57), Expect = 2.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 35 LGIESAKKQDFAQAKTHFEKACEL 58
LG ++ KK+DF A H++KA EL
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKEL 33
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 26.2 bits (56), Expect = 3.8
Identities = 22/82 (26%), Positives = 33/82 (39%), Gaps = 6/82 (7%)
Query: 152 DLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQ 211
DL++++D Y K +K N Y YS+ A V Y E YN GV +
Sbjct: 12 DLQRSIDFYTKVLGMKLLRTSENPEYKYSL------AFVGYGPETEEAVIELTYNWGVDK 65
Query: 212 YNAQGTAKDEKQAVENFKKGCK 233
Y +V+N + C+
Sbjct: 66 YELGTAYGHIALSVDNAAEACE 87
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 25.8 bits (55), Expect = 5.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 178 IYSVTKNFKEAIVRYSKACELKDGR 202
IY++ +FKE+++ +SK + DGR
Sbjct: 90 IYTLPLSFKESLLGFSKTIQTIDGR 114
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-Peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-Peroxidase From Haloarcula
Marismortui
Length = 731
Score = 25.4 bits (54), Expect = 6.5
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 71 YEEGKGVG---KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQG------VSKDAKKAS 121
+EE K V +D + + + + E+ +G G +++G +Y N +G AK
Sbjct: 179 FEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIR 238
Query: 122 QYYSKACDLNHAEGCMVLGSLHHYG 146
Q + + +N E ++ H +G
Sbjct: 239 QTFDRMA-MNDKETAALIAGGHTFG 262
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
Length = 605
Score = 25.4 bits (54), Expect = 6.5
Identities = 31/134 (23%), Positives = 47/134 (34%), Gaps = 28/134 (20%)
Query: 97 GYGCNLLGNLY---------YNGQGVSKDAKKASQYYS---KACDLNHAEGCMVLGSLHH 144
G C G +Y N VSK + S ++ +A + E + LG L
Sbjct: 131 GLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGA 190
Query: 145 YGVGTPKD----------------LRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEA 188
YG+G P L LD+ DL + P I + K++
Sbjct: 191 YGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTL 250
Query: 189 IVRYSKACELKDGR 202
+ + KAC K G+
Sbjct: 251 LDNFMKACTKKYGQ 264
>pdb|1FT5|A Chain A, Crystal Structure Of The Oxidized State Of Cytochrome C554
From Nitrosomonas Europaea
pdb|1BVB| Heme-Packing Motifs Revealed By The Crystal Structure Of
Cytochrome C554 From Nitrosomonas Europaea
pdb|1FT6|A Chain A, Reduced State Of Cytochrome C554 From Nitrosomonas
Europaea
Length = 211
Score = 25.0 bits (53), Expect = 8.5
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 91 GCELNDGYGCNLLGNLYYNGQGVSKDAKKA--SQYYSKACDLNHAEGC 136
GCE G G N G+ +GQ K KK K D + E C
Sbjct: 87 GCESCHGPGRNFRGDHRKSGQAFEKSGKKTPRKDLAKKGQDFHFEERC 134
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,582,839
Number of Sequences: 13198
Number of extensions: 71631
Number of successful extensions: 237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 23
length of query: 250
length of database: 2,899,336
effective HSP length: 86
effective length of query: 164
effective length of database: 1,764,308
effective search space: 289346512
effective search space used: 289346512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)