BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644839|ref|NP_207009.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
         (250 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KLX|A  Chain A, Helicobacter Pylori Cysteine Rich Prote...   113  2e-26
pdb|1JMY|A  Chain A, Truncated Recombinant Human Bile Salt S...    33  0.031
pdb|1F6W|A  Chain A, Structure Of The Catalytic Domain Of Hu...    33  0.031
pdb|1GZE|A  Chain A, Structure Of The Clostridium Botulinum ...    28  0.77
pdb|1GZF|A  Chain A, Structure Of The Clostridium Botulinum ...    28  0.77
pdb|1E96|B  Chain B, Structure Of The RacP67PHOX COMPLEX           28  1.0
pdb|1HH8|A  Chain A, The Active N-Terminal Region Of P67phox...    28  1.0
pdb|1AKN|    Structure Of Bile-Salt Activated Lipase               28  1.3
pdb|1AQL|A  Chain A, Crystal Structure Of Bovine Bile-Salt A...    28  1.3
pdb|1ELR|A  Chain A, Crystal Structure Of The Tpr2a-Domain O...    27  2.9
pdb|1F9Z|A  Chain A, Crystal Structure Of The Ni(Ii)-Bound G...    26  3.8
pdb|1C3G|A  Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1      26  5.0
pdb|1ITK|A  Chain A, Crystal Structure Of Catalase-Peroxidas...    25  6.5
pdb|1LLQ|A  Chain A, Crystal Structure Of Malic Enzyme From ...    25  6.5
pdb|1FT5|A  Chain A, Crystal Structure Of The Oxidized State...    25  8.5
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
          Length = 138

 Score =  113 bits (283), Expect = 2e-26
 Identities = 56/131 (42%), Positives = 79/131 (59%), Gaps = 6/131 (4%)

Query: 42  KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
           K+D  +A  ++ KACEL   FGC+ L +  +  K      +K  Q+ +K CELN G GC 
Sbjct: 8   KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61

Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
            LG+ Y NG+ V KD +KA+QYYSKAC LN  +GC++LG   + G G  K+ ++A+  +E
Sbjct: 62  FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121

Query: 162 KACDLKDSPGC 172
           KAC L     C
Sbjct: 122 KACRLGSEDAC 132
 Score =  109 bits (272), Expect = 3e-25
 Identities = 62/136 (45%), Positives = 73/136 (53%), Gaps = 12/136 (8%)

Query: 74  GKGVGKDLKKAIQFYTKGCELNDGYGC-NLLGNLYYNGQGVSKDAKKASQYYSKACDLNH 132
           G  V KDLKKAIQ+Y K CELN+ +GC +L+ N   N Q       K  QY SKAC+LN 
Sbjct: 4   GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56

Query: 133 AEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEA 188
             GC  LG  +  G    KDLRKA   Y KAC L D  GC+  GY       V KN K+A
Sbjct: 57  GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116

Query: 189 IVRYSKACELKDGRGC 204
           +  + KAC L     C
Sbjct: 117 VKTFEKACRLGSEDAC 132
 Score = 99.0 bits (245), Expect = 5e-22
 Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 10/138 (7%)

Query: 110 GQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDS 169
           G  V KD KKA QYY KAC+LN   GC+ L S       +  + +K      KAC+L   
Sbjct: 4   GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57

Query: 170 PGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAV 225
            GC   G  Y     V K+ ++A   YSKAC L D  GC  LG  QY  +G  K+EKQAV
Sbjct: 58  NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117

Query: 226 ENFKKGCKSSVKEACDAL 243
           + F+K C+   ++AC  L
Sbjct: 118 KTFEKACRLGSEDACGIL 135
 Score = 96.7 bits (239), Expect = 2e-21
 Identities = 46/91 (50%), Positives = 60/91 (65%)

Query: 51  HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
           +  KACEL +G GC FLG FYE GK V KDL+KA Q+Y+K C LND  GC +LG   Y G
Sbjct: 47  YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106

Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
           +GV K+ K+A + + KAC L   + C +L +
Sbjct: 107 KGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 24/64 (37%), Positives = 36/64 (55%)

Query: 42  KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
           K+D  +A  ++ KAC L +  GC+ LG     GKGV K+ K+A++ + K C L     C 
Sbjct: 74  KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133

Query: 102 LLGN 105
           +L N
Sbjct: 134 ILNN 137
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
          Length = 522

 Score = 33.1 bits (74), Expect = 0.031
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 64  CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
           C++L  +  +G K V +DL   I  Y     +  G+G N L N  Y+G+ ++
Sbjct: 80  CLYLNIWVPQGRKQVSRDLPVMIWIYGGAFLMGSGHGANFLNNYLYDGEEIA 131
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
           Activated Lipase
          Length = 533

 Score = 33.1 bits (74), Expect = 0.031
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 64  CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
           C++L  +  +G K V +DL   I  Y     +  G+G N L N  Y+G+ ++
Sbjct: 80  CLYLNIWVPQGRKQVSRDLPVMIWIYGGAFLMGSGHGANFLNNYLYDGEEIA 131
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
           Mutant)
 pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
           Mutant)
 pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
           Mutant)
 pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
           Mutant)
          Length = 211

 Score = 28.5 bits (62), Expect = 0.77
 Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 1/72 (1%)

Query: 160 YEKACDLKDSPGCINAGYI-YSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
           Y++  ++  +    NA Y  Y ++K+ KEAIV Y+K+    +G+   N GV+        
Sbjct: 6   YQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLI 65

Query: 219 KDEKQAVENFKK 230
           K  +   ++F K
Sbjct: 66  KQVELLDKSFNK 77
 Score = 26.6 bits (57), Expect = 2.9
 Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 4/67 (5%)

Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
           GN  Y   G+SK  K+A   Y+K+    + +     G ++    G P +L K ++L +K+
Sbjct: 19  GNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVIN----GFPSNLIKQVELLDKS 74

Query: 164 CDLKDSP 170
            +   +P
Sbjct: 75  FNKMKTP 81
>pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme
           (Wild-Type) In Complex With Nad
 pdb|1GZF|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme
           (Wild-Type) In Complex With Nad
 pdb|1GZF|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme
           (Wild-Type) In Complex With Nad
 pdb|1GZF|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme
           (Wild-Type) In Complex With Nad
 pdb|1G24|A Chain A, The Crystal Structure Of Exoenzyme C3 From Clostridium
           Botulinum
 pdb|1G24|B Chain B, The Crystal Structure Of Exoenzyme C3 From Clostridium
           Botulinum
 pdb|1G24|C Chain C, The Crystal Structure Of Exoenzyme C3 From Clostridium
           Botulinum
 pdb|1G24|D Chain D, The Crystal Structure Of Exoenzyme C3 From Clostridium
           Botulinum
          Length = 211

 Score = 28.5 bits (62), Expect = 0.77
 Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 1/72 (1%)

Query: 160 YEKACDLKDSPGCINAGYI-YSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
           Y++  ++  +    NA Y  Y ++K+ KEAIV Y+K+    +G+   N GV+        
Sbjct: 6   YQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLI 65

Query: 219 KDEKQAVENFKK 230
           K  +   ++F K
Sbjct: 66  KQVELLDKSFNK 77
 Score = 26.6 bits (57), Expect = 2.9
 Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 4/67 (5%)

Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
           GN  Y   G+SK  K+A   Y+K+    + +     G ++    G P +L K ++L +K+
Sbjct: 19  GNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVIN----GFPSNLIKQVELLDKS 74

Query: 164 CDLKDSP 170
            +   +P
Sbjct: 75  FNKMKTP 81
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
          Length = 203

 Score = 28.1 bits (61), Expect = 1.0
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 23/98 (23%)

Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
           KD + ALD +    D   S  C N G +Y++ KN  EA   ++++               
Sbjct: 20  KDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN------------- 65

Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEACD-ALKELK 247
                   +D+  AV  F++G      E  D A+K+LK
Sbjct: 66  --------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
           Angstrom Resolution And Biochemical Characterizations Of
           The A128v Mutant Implicated In Chronic Granulomatous
           Disease
          Length = 213

 Score = 28.1 bits (61), Expect = 1.0
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 23/98 (23%)

Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
           KD + ALD +    D   S  C N G +Y++ KN  EA   ++++               
Sbjct: 20  KDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN------------- 65

Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEACD-ALKELK 247
                   +D+  AV  F++G      E  D A+K+LK
Sbjct: 66  --------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95
>pdb|1AKN|   Structure Of Bile-Salt Activated Lipase
          Length = 579

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 1/52 (1%)

Query: 64  CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
           C++L  +  +G K V  DL   I  Y     +    G N L N  Y+G+ ++
Sbjct: 80  CLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIA 131
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
           Complexed With Taurocholate
 pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
           Complexed With Taurocholate
          Length = 532

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 1/52 (1%)

Query: 64  CVFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
           C++L  +  +G K V  DL   I  Y     +    G N L N  Y+G+ ++
Sbjct: 80  CLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIA 131
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain Of Hop In Complex
          With The Hsp90-Peptide Meevd
          Length = 131

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 35 LGIESAKKQDFAQAKTHFEKACEL 58
          LG ++ KK+DF  A  H++KA EL
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKEL 33
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
           Escherichia Coli
 pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
           Escherichia Coli
 pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
           Escherichia Coli
 pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
           Escherichia Coli
 pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
           Escherichia Coli
 pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
           Escherichia Coli
 pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
           Escherichia Coli
 pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
           Escherichia Coli
 pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
           Escherichia Coli
 pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
           Escherichia Coli
          Length = 135

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 22/82 (26%), Positives = 33/82 (39%), Gaps = 6/82 (7%)

Query: 152 DLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQ 211
           DL++++D Y K   +K      N  Y YS+      A V Y    E       YN GV +
Sbjct: 12  DLQRSIDFYTKVLGMKLLRTSENPEYKYSL------AFVGYGPETEEAVIELTYNWGVDK 65

Query: 212 YNAQGTAKDEKQAVENFKKGCK 233
           Y           +V+N  + C+
Sbjct: 66  YELGTAYGHIALSVDNAAEACE 87
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
          Length = 170

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 178 IYSVTKNFKEAIVRYSKACELKDGR 202
           IY++  +FKE+++ +SK  +  DGR
Sbjct: 90  IYTLPLSFKESLLGFSKTIQTIDGR 114
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-Peroxidase From Haloarcula
           Marismortui
 pdb|1ITK|B Chain B, Crystal Structure Of Catalase-Peroxidase From Haloarcula
           Marismortui
          Length = 731

 Score = 25.4 bits (54), Expect = 6.5
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 71  YEEGKGVG---KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQG------VSKDAKKAS 121
           +EE K V    +D  +  + + +  E+ +G G +++G +Y N +G          AK   
Sbjct: 179 FEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIR 238

Query: 122 QYYSKACDLNHAEGCMVLGSLHHYG 146
           Q + +   +N  E   ++   H +G
Sbjct: 239 QTFDRMA-MNDKETAALIAGGHTFG 262
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
          Length = 605

 Score = 25.4 bits (54), Expect = 6.5
 Identities = 31/134 (23%), Positives = 47/134 (34%), Gaps = 28/134 (20%)

Query: 97  GYGCNLLGNLY---------YNGQGVSKDAKKASQYYS---KACDLNHAEGCMVLGSLHH 144
           G  C   G +Y          N   VSK  +  S ++    +A  +   E  + LG L  
Sbjct: 131 GLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGA 190

Query: 145 YGVGTPKD----------------LRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEA 188
           YG+G P                  L   LD+     DL + P  I   +     K++   
Sbjct: 191 YGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTL 250

Query: 189 IVRYSKACELKDGR 202
           +  + KAC  K G+
Sbjct: 251 LDNFMKACTKKYGQ 264
>pdb|1FT5|A Chain A, Crystal Structure Of The Oxidized State Of Cytochrome C554
           From Nitrosomonas Europaea
 pdb|1BVB|   Heme-Packing Motifs Revealed By The Crystal Structure Of
           Cytochrome C554 From Nitrosomonas Europaea
 pdb|1FT6|A Chain A, Reduced State Of Cytochrome C554 From Nitrosomonas
           Europaea
          Length = 211

 Score = 25.0 bits (53), Expect = 8.5
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 91  GCELNDGYGCNLLGNLYYNGQGVSKDAKKA--SQYYSKACDLNHAEGC 136
           GCE   G G N  G+   +GQ   K  KK        K  D +  E C
Sbjct: 87  GCESCHGPGRNFRGDHRKSGQAFEKSGKKTPRKDLAKKGQDFHFEERC 134
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.318    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,582,839
Number of Sequences: 13198
Number of extensions: 71631
Number of successful extensions: 237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 23
length of query: 250
length of database: 2,899,336
effective HSP length: 86
effective length of query: 164
effective length of database: 1,764,308
effective search space: 289346512
effective search space used: 289346512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)