BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644841|ref|NP_207011.1| glucose inhibited division
protein (gidA) [Helicobacter pylori 26695]
(621 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QO8|A Chain A, The Structure Of The Open Conformation ... 33 0.12
pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT 32 0.16
pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant, ... 32 0.16
pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glyci... 32 0.27
pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid 31 0.36
pdb|1AEP| Apolipophorin Iii 31 0.36
pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 31 0.36
pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 31 0.36
pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 31 0.36
pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 31 0.36
pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mu... 31 0.36
pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form ... 31 0.36
pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With ... 31 0.47
pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant F... 31 0.47
pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavo... 31 0.47
pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant F... 31 0.47
pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant F... 31 0.47
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frig... 31 0.47
pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant F... 31 0.47
pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant F... 31 0.47
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frig... 31 0.47
pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT ... 31 0.47
pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas M... 30 0.61
pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated... 30 0.80
pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized F... 30 0.80
pdb|1GSN| Human Glutathione Reductase Modified By Dinitro... 30 0.80
pdb|1DNC| Human Glutathione Reductase Modified By Digluta... 30 0.80
pdb|1XAN| Human Glutathione Reductase In Complex With A X... 30 0.80
pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Co... 30 1.0
pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhy... 29 1.4
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 29 1.4
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 29 1.4
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 29 1.8
pdb|1TRB| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With... 28 2.3
pdb|1DJN|A Chain A, Structural And Biochemical Characteriza... 28 2.3
pdb|1TDE| Thioredoxin Reductase (E.C.1.6.4.5) (Wild Type) 28 2.3
pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between ... 28 2.3
pdb|1DJQ|A Chain A, Structural And Biochemical Characteriza... 28 2.3
pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase 28 2.3
pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxi... 28 2.3
pdb|1BHY| Low Temperature Middle Resolution Structure Of ... 28 2.3
pdb|1TDF| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With... 28 2.3
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 28 3.0
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase >gi|158... 28 3.0
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 28 3.0
pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad... 28 4.0
pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-... 28 4.0
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 27 5.2
pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Fer... 27 5.2
pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase ... 27 6.7
pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Fl... 27 6.7
pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With ... 27 6.7
pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritim... 27 6.7
pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 27 8.8
pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Re... 27 8.8
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinell... 27 8.8
pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinell... 27 8.8
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 32.7 bits (73), Expect = 0.12
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLI 33
+ +LVVG G AG ASL A K GA V L+
Sbjct: 122 TQVLVVGAGSAGFNASLAAKKAGANVILV 150
>pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 32.3 bits (72), Expect = 0.16
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
V D LV+GGG G+E++ AA++GAR ++
Sbjct: 18 VASYDYLVIGGGSGGLESAWRAAELGARAAVV 49
>pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
pdb|3GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|2GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|4GRT| Human Glutathione Reductase A34e, R37w Mutant, Mixed Disulfide
Between Trypanothione And The Enzyme
Length = 461
Score = 32.3 bits (72), Expect = 0.16
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
V D LV+GGG G+E++ AA++GAR ++
Sbjct: 1 VASYDYLVIGGGSGGLESAWRAAELGARAAVV 32
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 31.6 bits (70), Expect = 0.27
Identities = 33/160 (20%), Positives = 60/160 (36%), Gaps = 14/160 (8%)
Query: 4 ESDILVVGGGHAGIEASLIAAKMGARVHLIT---MLIDTIGLASCNPAIGGLGKGHLTKE 60
E+D++++GGG G A++ AA++G + I L T C P+ L H+ E
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE 65
Query: 61 VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQ 120
G+ + + + K AV I+ + +N V
Sbjct: 66 AKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIE----GLFKKNKVTYVKGYG--- 118
Query: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV 160
+ ++ V N + K +II TG+ +K +
Sbjct: 119 ----KFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSL 154
>pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid
Length = 447
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGL 42
++++V+G G+ GIEA+ AK G +V +I +L +G+
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 187
>pdb|1AEP| Apolipophorin Iii
Length = 161
Score = 31.2 bits (69), Expect = 0.36
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 111 LNTPNLSVSQEMTESLILEN-DEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQ 169
LN ++ + E+ E+L L DE + + T N ++ K +TT + H G Q
Sbjct: 14 LNHTIVNAAHELHETLGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEAEKHQGSVAEQ 73
Query: 170 NGRFGENASNSL-----ALNLRE 187
F N +NS+ +LNL++
Sbjct: 74 LNAFARNLNNSIHDAATSLNLQD 96
>pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ala (C42a)
Length = 447
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGL 42
++++V+G G+ GIEA+ AK G +V +I +L +G+
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 187
>pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser 41 Replaced
By Cys (S41c)
Length = 447
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGL 42
++++V+G G+ GIEA+ AK G +V +I +L +G+
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 187
>pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ser (C42s)
Length = 447
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGL 42
++++V+G G+ GIEA+ AK G +V +I +L +G+
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 187
>pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu 40 Replaced
By Cys (L40c)
Length = 447
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGL 42
++++V+G G+ GIEA+ AK G +V +I +L +G+
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 187
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGL 42
++++V+G G+ GIEA+ AK G +V +I +L +G+
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 187
>pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form With Cys 42
Oxidized To A Sulfonic Acid (Cys42-So3h)
pdb|2NPX| Nadh Peroxidase (E.C.1.11.1.1) With Cys 42 Oxidized To A Sulfonic
Acid (Cys42-So3h)
Length = 447
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 5 SDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGL 42
++++V+G G+ GIEA+ AK G +V +I +L +G+
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 187
>pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With Nad
pdb|1SAY|A Chain A, L-Alanine Dehydrogenase Complexed With Pyruvate
pdb|1PJB|A Chain A, L-Alanine Dehydrogenase
Length = 361
Score = 30.8 bits (68), Expect = 0.47
Identities = 12/39 (30%), Positives = 25/39 (63%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTI 40
VK ++++GGG G EA+ +A +GA+V + + ++ +
Sbjct: 165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERL 203
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 30.8 bits (68), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
D++VVG G AG A++ A GA+V LI P IGG K
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEK----------EPVIGGNAK 166
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 30.4 bits (67), Expect = 0.61
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 332 LITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQI---NGTTGYEEAAAQGLMAGINA 388
LI YGY IE + H IK AG + NG GY+ AA+GL A
Sbjct: 464 LINNYGYTIEV-------MIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGG 516
Query: 389 VLA 391
LA
Sbjct: 517 ELA 519
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 30.0 bits (66), Expect = 0.80
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
V D LV+GGG G+ ++ AA++GAR ++
Sbjct: 1 VASYDYLVIGGGSGGLASARRAAELGARAAVV 32
>pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized Form (E)
pdb|1GRB| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With Nadh
And Phosphate
pdb|1GRA| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With
Glutathione Disulfide And Nadp+
pdb|1GRE| Glutathione Reductase (E.C.1.6.4.2) Complex With Covalently
Bound Glutathione And Phosphate
pdb|1GRF| Glutathione Reductase (E.C.1.6.4.2) Carboxymethylated At Cys 58
Complex With Phosphate
pdb|1GRG| Glutathione Reductase (E.C.1.6.4.2) Modified By Bcnu
(1,3-Bis(2-Chloroethyl)-1-Nitrosourea) At Cys 58
Complexed With Phosphate
pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|4GR1| Glutathione Reductase (E.C.1.6.4.2) Oxidized Form Complexed With
Retro-Gssg
pdb|1GRH| Glutathione Reductase (E.C.1.6.4.2) Modified By Hecnu
(1-(2-Chloroethyl)-3-(2-Hydroxyethyl)-1-Nitrosourea) At
Cys 58 Complexed With Phosphate
Length = 478
Score = 30.0 bits (66), Expect = 0.80
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
V D LV+GGG G+ ++ AA++GAR ++
Sbjct: 18 VASYDYLVIGGGSGGLASARRAAELGARAAVV 49
>pdb|1GSN| Human Glutathione Reductase Modified By Dinitrosoglutathione
Length = 478
Score = 30.0 bits (66), Expect = 0.80
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
V D LV+GGG G+ ++ AA++GAR ++
Sbjct: 18 VASYDYLVIGGGSGGLASARRAAELGARAAVV 49
>pdb|1DNC| Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 30.0 bits (66), Expect = 0.80
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
V D LV+GGG G+ ++ AA++GAR ++
Sbjct: 18 VASYDYLVIGGGSGGLASARRAAELGARAAVV 49
>pdb|1XAN| Human Glutathione Reductase In Complex With A Xanthene Inhibitor
Length = 461
Score = 30.0 bits (66), Expect = 0.80
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
V D LV+GGG G+ ++ AA++GAR ++
Sbjct: 1 VASYDYLVIGGGSGGLASARRAAELGARAAVV 32
>pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Nicotinamide-Adenine-Dinucleotide (Nad+)
Length = 458
Score = 29.6 bits (65), Expect = 1.0
Identities = 11/27 (40%), Positives = 20/27 (73%)
Query: 7 ILVVGGGHAGIEASLIAAKMGARVHLI 33
++VVGGG+ G+E + K+GA+V ++
Sbjct: 174 LVVVGGGYIGLELGIAYRKLGAQVSVV 200
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 29.3 bits (64), Expect = 1.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLI-----TMLIDTIGL 42
D+L+VG G AG A++ +A+ G R L+ ++DT+ +
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDI 44
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 29.3 bits (64), Expect = 1.4
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 2 VKES-DILVVGGGHAGIEASLIAAKMGARVHLI 33
VKE+ D++++G G AG+ A++ A GA+V L+
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILL 155
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 29.3 bits (64), Expect = 1.4
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 2 VKES-DILVVGGGHAGIEASLIAAKMGARVHLI 33
VKE+ D++++G G AG+ A++ A GA+V L+
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILL 155
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 28.9 bits (63), Expect = 1.8
Identities = 20/72 (27%), Positives = 37/72 (50%), Gaps = 13/72 (18%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLI-----TMLIDTIGLASC-------NPAIGGLG 53
D+L+VG G AG A++ +A+ G R L+ ++DT+ + + + G
Sbjct: 214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGAL 273
Query: 54 KGHLTK-EVDVL 64
K H++ +VDV+
Sbjct: 274 KAHVSDYDVDVI 285
>pdb|1TRB| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With Cys 138 Replaced
By Ser (C138s)
Length = 320
Score = 28.5 bits (62), Expect = 2.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLI 33
+ + V+GGG+ +E +L + + + VHLI
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLI 174
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLIT 34
K S +L++G G AG A++ AA+ + LIT
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT 35
>pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|2TMD|A Chain A, Trimethylamine Dehydrogenase (E.C.1.5.99.7)
pdb|2TMD|B Chain B, Trimethylamine Dehydrogenase (E.C.1.5.99.7)
Length = 729
Score = 28.5 bits (62), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 ESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
+ +L+VG G +G EA+ + + G VHL G + A+ GLG+
Sbjct: 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGE 439
>pdb|1TDE| Thioredoxin Reductase (E.C.1.6.4.5) (Wild Type)
Length = 316
Score = 28.5 bits (62), Expect = 2.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLI 33
+ + V+GGG+ +E +L + + + VHLI
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLI 174
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLIT 34
K S +L++G G AG A++ AA+ + LIT
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT 35
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 28.5 bits (62), Expect = 2.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLI 33
+ + V+GGG+ +E +L + + + VHLI
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLI 174
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLIT 34
K S +L++G G AG A++ AA+ + LIT
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT 35
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 28.5 bits (62), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 ESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGK 54
+ +L+VG G +G EA+ + + G VHL G + A+ GLG+
Sbjct: 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGE 439
>pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 28.5 bits (62), Expect = 2.3
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 7 ILVVGGGHAGIEASLIAAKMGARVHLITML 36
+L++GGG G+E + + +G+R+ ++ M+
Sbjct: 188 LLIIGGGIIGLEMGTVYSTLGSRLDVVEMM 217
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 28.5 bits (62), Expect = 2.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLI 33
+ + V+GGG+ +E +L + + + VHLI
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLI 174
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLIT 34
K S +L++G G AG A++ AA+ + LIT
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT 35
>pdb|1BHY| Low Temperature Middle Resolution Structure Of P64k From Masc Data
Length = 482
Score = 28.5 bits (62), Expect = 2.3
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 7 ILVVGGGHAGIEASLIAAKMGARVHLITML 36
+L++GGG G+E + + +G+R+ ++ M+
Sbjct: 188 LLIIGGGIIGLEMGTVYSTLGSRLDVVEMM 217
>pdb|1TDF| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With Cys 138 Replaced
By Ser (C138s)
Length = 316
Score = 28.5 bits (62), Expect = 2.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLI 33
+ + V+GGG+ +E +L + + + VHLI
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLI 174
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (61%)
Query: 3 KESDILVVGGGHAGIEASLIAAKMGARVHLIT 34
K S +L++G G AG A++ AA+ + LIT
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT 35
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 28.1 bits (61), Expect = 3.0
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 462 ELKKDKQEIQDNLKRLKEYILTPSKEVLKRLDELDE--NPINDKVDGVSLLARDSFNAEK 519
E + DK+ +D K+L++ +++ K++ DELD+ + D + + L + + +AE
Sbjct: 24 EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE- 82
Query: 520 MRSFFSFLAPLNERV 534
+ +A LN R+
Sbjct: 83 -----ADVASLNRRI 92
>pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
Length = 499
Score = 28.1 bits (61), Expect = 3.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLITMLIDT 39
D++++GGG G+ A+ AAK +V ++ + T
Sbjct: 14 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT 47
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 28.1 bits (61), Expect = 3.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 4 ESDILVVGGGHAGIEASLIAAKMGARVHLI 33
E++ LVVG G G A++ AA++G +V ++
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIV 32
Score = 27.3 bits (59), Expect = 5.2
Identities = 32/130 (24%), Positives = 56/130 (42%), Gaps = 12/130 (9%)
Query: 7 ILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE-VDVLG 65
++V+GGG+ GIE A G +V ++ + L+ + + K L K+ V+V+
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKVTILEGAGEI--LSGFEKQMAAIIKKRLKKKGVEVVT 230
Query: 66 GAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQ---EM 122
A+ G + R + G ID D Y ++ NT L + Q +M
Sbjct: 231 NALA-----KGAEEREDGVTVTYEANGETKTIDAD-YVLVTVGRRPNTDELGLEQIGIKM 284
Query: 123 TESLILENDE 132
T ++E D+
Sbjct: 285 TNRGLIEVDQ 294
>pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
pdb|1GES|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
Length = 450
Score = 27.7 bits (60), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 7 ILVVGGGHAGIEASLIAAKMGARVHLITM 35
+ VVG G+ G+E + +GA+ HL M
Sbjct: 170 VAVVGAGYIGVELGGVINGLGAKTHLFEM 198
>pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-Alanine And A
Partially Occupied Biatomic Species
pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes
At Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex
With Two Anthranylate Molecules
Length = 363
Score = 27.7 bits (60), Expect = 4.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 1 MVKESDILVVGGGHAGIEASLIAAKMGARVHLI 33
M + ++V+G G G+ ++LI A+ G VH++
Sbjct: 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHIL 35
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 27.3 bits (59), Expect = 5.2
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 458 DFYKELKKDKQEIQDNLKRLKEYILTPSKEVLKRLDELDE--NPINDKVDGVSLLARDSF 515
D ++ + DK+ +D K+L++ +++ K++ DELD+ + D + + L + +
Sbjct: 20 DRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKAT 79
Query: 516 NAEKMRSFFSFLAPLNERV 534
+AE + +A LN R+
Sbjct: 80 DAE------ADVASLNRRI 92
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
Length = 408
Score = 27.3 bits (59), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 4 ESDILVVGGGHAGIEASLIAAKMGARVHLI 33
+S +L+VGGG G+E + A G V L+
Sbjct: 145 QSRLLIVGGGVIGLELAATARTAGVHVSLV 174
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 26.9 bits (58), Expect = 6.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 2 VKESDILVVGGGHAGIEASLIAA 24
V E+DIL++GGG +G A+ AA
Sbjct: 20 VVETDILIIGGGFSGCGAAYEAA 42
>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
Length = 398
Score = 26.9 bits (58), Expect = 6.7
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 13/59 (22%)
Query: 469 EIQDNLKRLKEYILTPSK-------------EVLKRLDELDENPINDKVDGVSLLARDS 514
EI +NL+R++E + + E+ +RL+E+D + +GV +LA+D+
Sbjct: 31 EINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDN 89
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|A Chain A, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|M Chain M, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 602
Score = 26.9 bits (58), Expect = 6.7
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 4 ESDILVVGGGHAGIEASLIAAKM--GARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEV 61
++D+ +VG G AG+ A++ AA+ A++ LI+ + + H V
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM--------------RSH---TV 47
Query: 62 DVLGGAMGIITDHSGLQY 79
GG+ + DH +Y
Sbjct: 48 AAEGGSAAVAQDHDSFEY 65
>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Recycling Factor, Rrf
Length = 185
Score = 26.9 bits (58), Expect = 6.7
Identities = 14/46 (30%), Positives = 29/46 (62%), Gaps = 3/46 (6%)
Query: 455 MEEDFYKELKKDKQE---IQDNLKRLKEYILTPSKEVLKRLDELDE 497
+ + K++K+D++E +D+ KRL+ I + E +++LDE+ E
Sbjct: 131 IRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFE 176
>pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
pdb|3LAD|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
Length = 476
Score = 26.6 bits (57), Expect = 8.8
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 6 DILVVGGGHAGIEASLIAAKMGARVHLI---------TMLIDTIGLASCNPAIGGLGKGH 56
D++V+G G G A++ +A++G + LI T L T C P+ L +
Sbjct: 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSY 64
Query: 57 LTKEVDVLGGAMGIITDHSGLQYRVLNASKGPAVR 91
E GI T + + A K VR
Sbjct: 65 KFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVR 99
>pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLA|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 26.6 bits (57), Expect = 8.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLITML 36
V+ D LV+GGG AG+ A++ + G +++++
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLI 37
>pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 655
Score = 26.6 bits (57), Expect = 8.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLITML 36
V+ D LV+GGG AG+ A++ + G +++++
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLI 37
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 26.6 bits (57), Expect = 8.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 2 VKESDILVVGGGHAGIEASLIAAKMGARVHLITML 36
V+ D LV+GGG AG+ A++ + G +++++
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLI 37
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.138 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,572,723
Number of Sequences: 13198
Number of extensions: 159005
Number of successful extensions: 492
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 74
length of query: 621
length of database: 2,899,336
effective HSP length: 94
effective length of query: 527
effective length of database: 1,658,724
effective search space: 874147548
effective search space used: 874147548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)