BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644654|ref|NP_206823.1| hypothetical protein
[Helicobacter pylori 26695]
         (190 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1SEI|A  Chain A, Structure Of 30s Ribosomal Protein S8 >...    26  2.5
pdb|1I09|A  Chain A, Structure Of Glycogen Synthase Kinase-3...    24  9.7

>pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8
 pdb|1SEI|B Chain B, Structure Of 30s Ribosomal Protein S8
          Length = 130

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (61%)

Query: 159 RIYLDMHTIGAVLTGLGVGMLCVS 182
           R+Y+  H +  VL GLG+ +L  S
Sbjct: 84  RVYVKAHEVPRVLNGLGIAILSTS 107



>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
 pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
          Length = 420

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 37  PFPKVPKQPSVPLMFHFTEHYARFIPTILSVAIPLIQRDAVGLFQVANASIAT 89
           P  K+P     P +F+FT       P + ++ IP   R         NA+ A+
Sbjct: 346 PNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHARIQAAASTPTNATAAS 398



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,010,777
Number of Sequences: 13198
Number of extensions: 37400
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 2
length of query: 190
length of database: 2,899,336
effective HSP length: 83
effective length of query: 107
effective length of database: 1,803,902
effective search space: 193017514
effective search space used: 193017514
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)