BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644842|ref|NP_207012.1| sodium-dependent
transporter (huNaDC-1) [Helicobacter pylori 26695]
         (552 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I5U|A  Chain A, Solution Structure Of Cytochrome B5 Tri...    28  2.0
pdb|1ES1|A  Chain A, Crystal Structure Of Val61his Mutant Of...    28  3.5
pdb|1CYO|    Bovine Cytochrome B(5)                                28  3.5
pdb|1WDB|    Nmr Solution Structure Of Bovine Cytochrome B5,...    28  3.5
pdb|1EHB|A  Chain A, Crystal Structure Of Recombinant Trypsi...    28  3.5
pdb|1M20|A  Chain A, Crystal Structure Of F35y Mutant Of Try...    28  3.5
pdb|1J5Y|A  Chain A, Crystal Structure Of Transcriptional Re...    27  5.9
pdb|8PRN|    E1m, K50a, R52a, D97a, E99a Mutant Of Rh. Blast...    27  7.7

>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
           (E48aE56AD60A)
          Length = 82

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 12/28 (42%), Positives = 20/28 (70%), Gaps = 2/28 (7%)

Query: 302 WLLLTYVIFPLK--IKEIPGGKEVIRVE 327
           WL+L Y ++ L   ++E PGG+EV+R +
Sbjct: 20  WLILHYKVYDLTKFLEEHPGGEEVLRAQ 47



>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
           Trypsin-Solubilized Fragment Of Cytochrome B5
          Length = 82

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 19/26 (72%), Gaps = 2/26 (7%)

Query: 302 WLLLTYVIFPLK--IKEIPGGKEVIR 325
           WL+L Y ++ L   ++E PGG+EV+R
Sbjct: 20  WLILHYKVYDLTKFLEEHPGGEEVLR 45



>pdb|1CYO|   Bovine Cytochrome B(5)
          Length = 93

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 19/26 (72%), Gaps = 2/26 (7%)

Query: 302 WLLLTYVIFPLK--IKEIPGGKEVIR 325
           WL+L Y ++ L   ++E PGG+EV+R
Sbjct: 22  WLILHYKVYDLTKFLEEHPGGEEVLR 47



>pdb|1WDB|   Nmr Solution Structure Of Bovine Cytochrome B5, Minimized Average
           Structure
          Length = 104

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 19/26 (72%), Gaps = 2/26 (7%)

Query: 302 WLLLTYVIFPLK--IKEIPGGKEVIR 325
           WL+L Y ++ L   ++E PGG+EV+R
Sbjct: 26  WLILHYKVYDLTKFLEEHPGGEEVLR 51



>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
           Fragment Of Cytochrome B5
          Length = 82

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 19/26 (72%), Gaps = 2/26 (7%)

Query: 302 WLLLTYVIFPLK--IKEIPGGKEVIR 325
           WL+L Y ++ L   ++E PGG+EV+R
Sbjct: 20  WLILHYKVYDLTKFLEEHPGGEEVLR 45



>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
           Fragment Of Cytochrome B5
          Length = 82

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 19/26 (72%), Gaps = 2/26 (7%)

Query: 302 WLLLTYVIFPLK--IKEIPGGKEVIR 325
           WL+L Y ++ L   ++E PGG+EV+R
Sbjct: 20  WLILHYKVYDLTKYLEEHPGGEEVLR 45



>pdb|1J5Y|A Chain A, Crystal Structure Of Transcriptional Regulator (Tm1602)
          From Thermotoga Maritima At 2.3 A Resolution
          Length = 187

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 18/73 (24%), Positives = 30/73 (40%)

Query: 3  NHSHANTHTDTRTDDKSTKIVRLLGLIGGALIALVIYYALNSQMPHIVEEIPKLSSLNYK 62
          +H H + H  T   ++   IVR+L      +    +   L+     IV++I  L SL Y 
Sbjct: 7  HHHHHHXHXKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYN 66

Query: 63 AMPVVAGVAVLMG 75
           +    G  +  G
Sbjct: 67 IVATPRGYVLAGG 79



>pdb|8PRN|   E1m, K50a, R52a, D97a, E99a Mutant Of Rh. Blastica Porin
          Length = 289

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 370 DSVIAMGVSALLFILPANHQGDRLIDWGVAKKLPWDVLLLFGGGLALSAQF--SKTGLSL 427
           D++I+   S L   +    + D+ + +G A  + WD    F G    +AQF  S  G+++
Sbjct: 24  DTIIS---SRLRINIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTV 80

Query: 428 WIGHLVSGFSHLPILFIIVM 447
            +G++ + F  + + +   M
Sbjct: 81  SVGNVDTAFDSVALTYASAM 100



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,928,467
Number of Sequences: 13198
Number of extensions: 113051
Number of successful extensions: 281
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 8
length of query: 552
length of database: 2,899,336
effective HSP length: 93
effective length of query: 459
effective length of database: 1,671,922
effective search space: 767412198
effective search space used: 767412198
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)