BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644844|ref|NP_207014.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(368 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K5H|A Chain A, 1-Deoxy-D-Xylulose-5-Phosphate Reductoi... 184 1e-47
pdb|1JVS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose... 168 8e-43
pdb|1A0F|A Chain A, Crystal Structure Of Glutathione S-Tran... 30 0.43
pdb|1EHX|A Chain A, Nmr Solution Structure Of The Last Unkn... 28 1.3
pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exc... 27 2.8
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain Fro... 27 3.7
pdb|1PSD|A Chain A, D-3-Phosphoglycerate Dehydrogenase (Pho... 26 6.3
pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Cl... 26 6.3
pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspart... 26 8.2
pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna... 26 8.2
>pdb|1K5H|A Chain A, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|C Chain C, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|B Chain B, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
Length = 398
Score = 184 bits (468), Expect = 1e-47
Identities = 130/394 (32%), Positives = 204/394 (50%), Gaps = 44/394 (11%)
Query: 1 MVVLGSTGSIGKNALKIAKKFG--IEIEALSCGKNIALINEQIQVFKPKKVAILDPSDLN 58
+ +LGSTGSIG + L + + + AL GKN+ + EQ F P+ + D +
Sbjct: 4 LTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAK 63
Query: 59 DLEPL------GAEVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALA 112
L+ + EV G + M + V+ AIVG AGL + +++ K + LA
Sbjct: 64 LLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA 123
Query: 113 NKESLVSAGHLL------DISQITPIDSEHFGLWALL--------------QNKTLKPKS 152
NKESLV+ G L +Q+ P+DSEH ++ L QN + S
Sbjct: 124 NKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVV---S 180
Query: 153 LIISASGGAFRDTPLEFIPIQNAQNALKHPNWSMGSKITIDSASMVNKLFEILETYWLFG 212
++++ SGG FR+TPL + A +HPNWSMG KI++DSA+M+NK E +E WLF
Sbjct: 181 ILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 240
Query: 213 ASL-KIDALIERSSIVHALVEFEDNSIIAHLASADMQLPISYAID-PKLASLSASIKPLD 270
AS +++ LI S++H++V ++D S++A L DM+ PI++ + P +++ +KPLD
Sbjct: 241 ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN--RVNSGVKPLD 298
Query: 271 LYALSAIKFEPISMERYTLWCYKDLLLENPKLG----VVLNASNEVAMEKFLNKEIAFGG 326
LSA+ F +RY C K L +E + G LNA+NE+ + FL ++I F
Sbjct: 299 FCKLSALTFAAPDYDRYP--CLK-LAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTD 355
Query: 327 LIQTISQALESYDKMPFKLSSLEEVLELDKEVRE 360
+ LE D + +++VL +D RE
Sbjct: 356 IAALNLSVLEKMDMR--EPQCVDDVLSVDANARE 387
>pdb|1JVS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
pdb|1JVS|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
Length = 400
Score = 168 bits (426), Expect = 8e-43
Identities = 125/394 (31%), Positives = 192/394 (48%), Gaps = 44/394 (11%)
Query: 1 MVVLGSTGSIGKNALKIAKKFG--IEIEALSCGKNIALINEQIQVFKPKKVAILDPSDLN 58
+ +LGSTGSIG + L + + + AL GKN+ EQ F P+ D +
Sbjct: 4 LTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRXVEQCLEFSPRYAVXDDEASAK 63
Query: 59 ----DLEPLGAEVFVGLEGIDAMIEECTS---NLVLNAIVGVAGLKASFKSLQRNKKLAL 111
L+ G+ V L G A + + V AIVG AGL + +++ K + L
Sbjct: 64 LLKTXLQQQGSRTEV-LSGQQAACDXAALEDVDQVXAAIVGAAGLLPTLAAIRAGKTILL 122
Query: 112 ANKESLVSAGHLL------DISQITPIDSEHFGLWALL--------------QNKTLKPK 151
ANKESLV+ G L +Q+ P+DSEH ++ L QN +
Sbjct: 123 ANKESLVTCGRLFXDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVV--- 179
Query: 152 SLIISASGGAFRDTPLEFIPIQNAQNALKHPNWSMGSKITIDSASMVNKLFEILETYWLF 211
S++++ SGG FR+TPL + A +HPNWS G KI++DSA+ NK E +E WLF
Sbjct: 180 SILLTGSGGPFRETPLRDLATXTPDQACRHPNWSXGRKISVDSATXXNKGLEYIEARWLF 239
Query: 212 GASL-KIDALIERSSIVHALVEFEDNSIIAHLASADMQLPISYAID-PKLASLSASIKPL 269
AS + + LI S++H+ V ++D S++A L D + PI++ P +++ +KPL
Sbjct: 240 NASASQXEVLIHPQSVIHSXVRYQDGSVLAQLGEPDXRTPIAHTXAWPN--RVNSGVKPL 297
Query: 270 DLYALSAIKFEPISMERYTLWCYK---DLLLENPKLGVVLNASNEVAMEKFLNKEIAFGG 326
D LSA+ F +RY C K + + LNA+NE+ + FL ++I F
Sbjct: 298 DFCKLSALTFAAPDYDRYP--CLKLAXEAFEQGQAATTALNAANEITVAAFLAQQIRFTD 355
Query: 327 LIQTISQALESYDKMPFKLSSLEEVLELDKEVRE 360
+ LE D + +++VL +D RE
Sbjct: 356 IAALNLSVLEKXDXR--EPQCVDDVLSVDANARE 387
>pdb|1A0F|A Chain A, Crystal Structure Of Glutathione S-Transferase From
Escherichia Coli Complexed With Glutathionesulfonic Acid
pdb|1A0F|B Chain B, Crystal Structure Of Glutathione S-Transferase From
Escherichia Coli Complexed With Glutathionesulfonic Acid
Length = 201
Score = 30.0 bits (66), Expect = 0.43
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 164 DTPLEFIPIQNAQ---------NALKHPNWSMGSKITIDSASMVNKLFEILETYWLFGAS 214
DTP E+ P AQ ALK +W G + TI A LF +L W +
Sbjct: 116 DTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADA----YLFTVLR--WAYAVK 169
Query: 215 LKIDALIERSSIVHALVE 232
L ++ L ++ + + E
Sbjct: 170 LNLEGLEHIAAFMQRMAE 187
>pdb|1EHX|A Chain A, Nmr Solution Structure Of The Last Unknown Module Of The
Cellulosomal Scaffoldin Protein Cipc Of Clostridum
Cellulolyticum
Length = 94
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 5/64 (7%)
Query: 143 LQNKTLKPKSLIISASGGAFRDTPLEFIPIQNAQNA---LKHPNWSMGSKITIDSASMVN 199
+Q+ T+ P S ISA G+F DT + P N N L+ ++ G+ AS +N
Sbjct: 1 MQDPTINPTS--ISAKAGSFADTKITLTPNGNTFNGISELQSSQYTKGTNEVTLLASYLN 58
Query: 200 KLFE 203
L E
Sbjct: 59 TLPE 62
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
pdb|1DKG|B Chain B, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 197
Score = 27.3 bits (59), Expect = 2.8
Identities = 15/49 (30%), Positives = 31/49 (62%), Gaps = 3/49 (6%)
Query: 306 LNASNEVAMEKFLNKEIAFGGLIQTISQALESYDKMPFKLSSLEEVLEL 354
+ +++ A+EKF+N+ + +I ++ +ALE DK +S++ E +EL
Sbjct: 80 IEKAHKFALEKFINELLP---VIDSLDRALEVADKANPDMSAMVEDIEL 125
>pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 26.9 bits (58), Expect = 3.7
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Query: 276 AIKFEPISMERYTLWCYKDLLLENPKL-GVVLNASNEVAMEK 316
++K + ++++R L C K ++L NP + G+ A E+ EK
Sbjct: 165 SVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREK 206
>pdb|1PSD|A Chain A, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
Dehydrogenase) (E.C.1.1.1.95)
pdb|1PSD|B Chain B, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
Dehydrogenase) (E.C.1.1.1.95)
Length = 409
Score = 26.2 bits (56), Expect = 6.3
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 4/63 (6%)
Query: 108 KLALANKESLVSAGHLLDISQIT----PIDSEHFGLWALLQNKTLKPKSLIISASGGAFR 163
KL L N + LL++S + P + + + +KP SL+I+AS G
Sbjct: 184 KLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 243
Query: 164 DTP 166
D P
Sbjct: 244 DIP 246
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 26.2 bits (56), Expect = 6.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 168 EFIPIQNAQNALKHPNWSMGSKITIDSA 195
+FI ++ Q L H W+ + + +DSA
Sbjct: 332 DFISMKQDQEKLMHHRWASNNSVAVDSA 359
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/81 (24%), Positives = 37/81 (44%), Gaps = 3/81 (3%)
Query: 56 DLNDLEPLGAEVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALANKE 115
D+ D E + +VF + DA+ + S L + V G + N+ +A E
Sbjct: 37 DMRDREGI-VQVFFDPDRADAL--KLASELRNEFCIQVTGTVRARDEKNINRDMATGEIE 93
Query: 116 SLVSAGHLLDISQITPIDSEH 136
L S+ +++ + + P+DS H
Sbjct: 94 VLASSLTIINRADVLPLDSNH 114
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/81 (24%), Positives = 37/81 (44%), Gaps = 3/81 (3%)
Query: 56 DLNDLEPLGAEVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALANKE 115
D+ D E + +VF + DA+ + S L + V G + N+ +A E
Sbjct: 37 DMRDREGI-VQVFFDPDRADAL--KLASELRNEFCIQVTGTVRARDEKNINRDMATGEIE 93
Query: 116 SLVSAGHLLDISQITPIDSEH 136
L S+ +++ + + P+DS H
Sbjct: 94 VLASSLTIINRADVLPLDSNH 114
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,851,774
Number of Sequences: 13198
Number of extensions: 70433
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 12
length of query: 368
length of database: 2,899,336
effective HSP length: 90
effective length of query: 278
effective length of database: 1,711,516
effective search space: 475801448
effective search space used: 475801448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)