BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644845|ref|NP_207015.1| hypothetical protein
[Helicobacter pylori 26695]
(380 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein 30 0.45
pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein 30 0.45
pdb|1G9E|A Chain A, Solution Structure And Relaxation Measu... 30 0.59
pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 >gi|11513... 30 0.59
pdb|1HCV| Llama Heavy Chain Variable Domain Against Alpha... 30 0.59
pdb|1IEH|A Chain A, Solution Structure Of A Soluble Single-... 29 0.77
pdb|1QBL|H Chain H, Fab E8 (Fabe8a) X-Ray Structure At 2.26... 28 1.7
pdb|1WEJ|H Chain H, Igg1 Fab Fragment (Of E8 Antibody) Comp... 28 1.7
pdb|1QBM|H Chain H, Fab E8b Antibody, X-Ray Structure At 2.... 28 1.7
pdb|1JB0|B Chain B, Crystal Structure Of Photosystem I: A P... 28 2.2
pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539... 26 6.5
pdb|2BPA|1 Chain 1, Bacteriophage Phix174 Capsid Proteins G... 26 6.5
pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase F... 26 6.5
pdb|1KVP| Structural Analysis Of The Spiroplasma Virus, S... 26 6.5
pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family... 26 6.5
pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydroge... 26 6.5
pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174 26 6.5
pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540... 26 6.5
pdb|1CRK|A Chain A, Mitochondrial Creatine Kinase >gi|23922... 26 8.5
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA >... 26 8.5
pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9o... 26 8.5
>pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein
Length = 533
Score = 30.0 bits (66), Expect = 0.45
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 92 YNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEES 151
YN GG DRV+ N T +G Y+K K+ LN R N I + E+
Sbjct: 215 YNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEMMET 274
Query: 152 LFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKF 184
+ +P I+ IG DG E + + K F
Sbjct: 275 KYG-IPWIKCNFIGV----DGIVETLRDMAKCF 302
>pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein
Length = 525
Score = 30.0 bits (66), Expect = 0.45
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 92 YNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEES 151
YN GG DRV+ N T +G Y+K K+ LN R N I + E+
Sbjct: 215 YNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEMMET 274
Query: 152 LFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKF 184
+ +P I+ IG DG E + + K F
Sbjct: 275 KYG-IPWIKCNFIGV----DGIVETLRDMAKCF 302
>pdb|1G9E|A Chain A, Solution Structure And Relaxation Measurements Of An
Antigen-Free Heavy Chain Variable Domain (Vhh) From
Llama
Length = 117
Score = 29.6 bits (65), Expect = 0.59
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Query: 226 IKIDGDHVYDAKKLYESFYIPKSIKEVVMYSRINFVV-QDFEVFVCNSGDFGFLDAWG 282
I D Y A + F I + + +Y ++N + +D V+ C +G+ G D+WG
Sbjct: 51 INWDSARTYYASSVRGRFTISRDNAKKTVYLQMNSLKPEDTAVYTCGAGEGGTWDSWG 108
>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60
pdb|1DDG|B Chain B, Crystal Structure Of Sir-Fp60
pdb|1DDI|A Chain A, Crystal Structure Of Sir-Fp60
Length = 374
Score = 29.6 bits (65), Expect = 0.59
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 282 GDQWLFYNDCEPFEIWQHND-----DIYEILKLKDKHHIKDK-------ELMQWHFPLAK 329
GD L Y + +W ND ++ E+L LK + + E +QWHF L
Sbjct: 39 GDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTV 98
Query: 330 KRRNAIVDN 338
N IV+N
Sbjct: 99 NTAN-IVEN 106
>pdb|1HCV| Llama Heavy Chain Variable Domain Against Alpha Subunit Of Hcg
(Human Chorionic Gonadotropin)
Length = 117
Score = 29.6 bits (65), Expect = 0.59
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Query: 226 IKIDGDHVYDAKKLYESFYIPKSIKEVVMYSRINFVV-QDFEVFVCNSGDFGFLDAWG 282
I D Y A + F I + + +Y ++N + +D V+ C +G+ G D+WG
Sbjct: 51 INWDSARTYYASSVRGRFTISRDNAKKTVYLQMNSLKPEDTAVYTCGAGEGGTWDSWG 108
>pdb|1IEH|A Chain A, Solution Structure Of A Soluble Single-Domain Antibody
With Hydrophobic Residues Typical Of A VlVH INTERFACE
Length = 135
Score = 29.3 bits (64), Expect = 0.77
Identities = 23/82 (28%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Query: 209 YHYSNYTLSFIPKN-----EWVIKID-GD-HVYDAKKLYESFYIPKSIKEVVMYSRINFV 261
+ +S+Y ++++ + EWV I+ GD Y A + F I + + +Y ++N +
Sbjct: 27 FTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSL 86
Query: 262 V-QDFEVFVCNSGDFGFLDAWG 282
+D V+ C G LDAWG
Sbjct: 87 KSEDTAVYYCAKYSGGALDAWG 108
>pdb|1QBL|H Chain H, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 1.7
Identities = 16/63 (25%), Positives = 26/63 (40%), Gaps = 3/63 (4%)
Query: 223 EWVIKID---GDHVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLD 279
EW+ +ID G+ YD K ++ + + +D V+ C D+G D
Sbjct: 46 EWIGRIDPASGNTKYDPKFQDKATITADTSSNTAYLQLSSLTSEDTAVYYCAGYDYGNFD 105
Query: 280 AWG 282
WG
Sbjct: 106 YWG 108
>pdb|1WEJ|H Chain H, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
Length = 223
Score = 28.1 bits (61), Expect = 1.7
Identities = 16/63 (25%), Positives = 26/63 (40%), Gaps = 3/63 (4%)
Query: 223 EWVIKID---GDHVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLD 279
EW+ +ID G+ YD K ++ + + +D V+ C D+G D
Sbjct: 46 EWIGRIDPASGNTKYDPKFQDKATITADTSSNTAYLQLSSLTSEDTAVYYCAGYDYGNFD 105
Query: 280 AWG 282
WG
Sbjct: 106 YWG 108
>pdb|1QBM|H Chain H, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 1.7
Identities = 16/63 (25%), Positives = 26/63 (40%), Gaps = 3/63 (4%)
Query: 223 EWVIKID---GDHVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLD 279
EW+ +ID G+ YD K ++ + + +D V+ C D+G D
Sbjct: 46 EWIGRIDPASGNTKYDPKFQDKATITADTSSNTAYLQLSSLTSEDTAVYYCAGYDYGNFD 105
Query: 280 AWG 282
WG
Sbjct: 106 YWG 108
>pdb|1JB0|B Chain B, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 740
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 35 INHEIKEMLEAKKLHSLQEKALFNHDHQ 62
I H IKEM++AK + + FN HQ
Sbjct: 296 IGHSIKEMMDAKDFFGTKVEGPFNMPHQ 323
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 26.2 bits (56), Expect = 6.5
Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 7/78 (8%)
Query: 165 GFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKN-- 222
GF+ +D + + E P ++ + +PYEV + W + SF P N
Sbjct: 619 GFDSVNDWANKGY-EVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMP 677
Query: 223 ---EWVIKIDGDHVYDAK 237
E + DG+H ++AK
Sbjct: 678 QNAETSVDRDGNH-FNAK 694
>pdb|2BPA|1 Chain 1, Bacteriophage Phix174 Capsid Proteins Gpf, Gpg, Gpj And
Four Nucleotides
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 51 LQEKALFNHDHQESVFLAIASLNNESFIERNKSIYKN 87
LQE+ L H + F ++ L S ++ N ++Y+N
Sbjct: 379 LQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN 415
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 763
Score = 26.2 bits (56), Expect = 6.5
Identities = 16/49 (32%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 14 RMPFVVRY-VRSLKGAKNIYDEINHEIKEMLEAKKLHSLQEKALFNHDH 61
R PF+ RY V +K + E++H HS+ E+ALF+ D+
Sbjct: 270 RHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDN 318
>pdb|1KVP| Structural Analysis Of The Spiroplasma Virus, Spv4, Implications
For Evolutionary Variation To Obtain Host Diversity
Among The Microviridae, Electron Microscopy, Alpha
Carbons Only
Length = 497
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 51 LQEKALFNHDHQESVFLAIASLNNESFIERNKSIYKN 87
LQE+ L H + F ++ L S ++ N ++Y+N
Sbjct: 450 LQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN 486
>pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family 20
pdb|1QBB| Bacterial Chitobiase Complexed With Chitobiose (Dinag)
Length = 858
Score = 26.2 bits (56), Expect = 6.5
Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 7/78 (8%)
Query: 165 GFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKN-- 222
GF+ +D + + E P ++ + +PYEV + W + SF P N
Sbjct: 619 GFDSVNDWANKGY-EVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMP 677
Query: 223 ---EWVIKIDGDHVYDAK 237
E + DG+H ++AK
Sbjct: 678 QNAETSVDRDGNH-FNAK 694
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
Length = 1332
Score = 26.2 bits (56), Expect = 6.5
Identities = 16/49 (32%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 14 RMPFVVRY-VRSLKGAKNIYDEINHEIKEMLEAKKLHSLQEKALFNHDH 61
R PF+ RY V +K + E++H HS+ E+ALF+ D+
Sbjct: 839 RHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDN 887
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 51 LQEKALFNHDHQESVFLAIASLNNESFIERNKSIYKN 87
LQE+ L H + F ++ L S ++ N ++Y+N
Sbjct: 379 LQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN 415
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 26.2 bits (56), Expect = 6.5
Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 7/78 (8%)
Query: 165 GFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKN-- 222
GF+ +D + + E P ++ + +PYEV + W + SF P N
Sbjct: 619 GFDSVNDWANKGY-EVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMP 677
Query: 223 ---EWVIKIDGDHVYDAK 237
E + DG+H ++AK
Sbjct: 678 QNAETSVDRDGNH-FNAK 694
>pdb|1CRK|A Chain A, Mitochondrial Creatine Kinase
pdb|1CRK|B Chain B, Mitochondrial Creatine Kinase
pdb|1CRK|C Chain C, Mitochondrial Creatine Kinase
pdb|1CRK|D Chain D, Mitochondrial Creatine Kinase
Length = 380
Score = 25.8 bits (55), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 348 KHHADLIGTKIEESMLDEKRIL 369
KHH DL +KI DE+ +L
Sbjct: 101 KHHTDLDASKITHGQFDERYVL 122
>pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
Length = 605
Score = 25.8 bits (55), Expect = 8.5
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 158 AIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLS 217
A+ I F D D +++ K+ +F Y + DC +S Y
Sbjct: 159 AMAASSIVFADDDPAYAATLVQHAKQLYTFADT---YRGVYSDCVPAGAFYNSWSGYQDE 215
Query: 218 FIPKNEWVIKIDGDHVYDAKKLYE 241
+ W+ K GD Y AK YE
Sbjct: 216 LVWGAYWLYKATGDDSYLAKAEYE 239
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 25.8 bits (55), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (67%)
Query: 171 DGSKEVILEFCKKFPSFIP 189
D + EV +FCK FP FIP
Sbjct: 432 DVAPEVGHKFCKDFPGFIP 450
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,405,390
Number of Sequences: 13198
Number of extensions: 107864
Number of successful extensions: 231
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 21
length of query: 380
length of database: 2,899,336
effective HSP length: 90
effective length of query: 290
effective length of database: 1,711,516
effective search space: 496339640
effective search space used: 496339640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)