BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644846|ref|NP_207016.1| hypothetical protein
[Helicobacter pylori 26695]
         (183 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FJJ|A  Chain A, Crystal Structure Of E.Coli Ybhb Protei...    43  2e-05
pdb|1BD9|B  Chain B, Human Phosphatidylethanolamine Binding ...    27  1.4
pdb|1KV7|A  Chain A, Crystal Structure Of Cueo, A Multi-Copp...    27  1.4
pdb|1AYX|    Crystal Structure Of Glucoamylase From Saccharo...    26  2.4
pdb|1IB5|A  Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Z...    26  2.4

>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member Of
           The Mammalian Pebp Family
          Length = 159

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 35/114 (30%), Positives = 55/114 (47%), Gaps = 19/114 (16%)

Query: 38  SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIV-Q 95
           SP ++W  V  G +S+ +   D DA    G  + HWVV N+            D R++ Q
Sbjct: 32  SPHLAWDDVPAGTKSFVVTCYDPDAPT--GSGWWHWVVVNLP----------ADTRVLPQ 79

Query: 96  GVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
           G  S   G +  P +   + R++   + Y G  PP G+ H Y+  V+ALDI ++
Sbjct: 80  GFGS---GLVAXP-DGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERI 129



>pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
 pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
           With Cacodylate
 pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
           With Cacodylate
 pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
          Length = 187

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 34/137 (24%), Positives = 49/137 (34%), Gaps = 33/137 (24%)

Query: 41  ISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSL 100
           ISW  ++  + Y L L D DA       +  W      H+ L  N        ++G N +
Sbjct: 53  ISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW------HHFLVVN--------MKG-NDI 97

Query: 101 TQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD--HHYLIQVYALDIPKLALKAPFFLGD 158
           + G + S                Y+G  PP G   H Y+  VY  D P L    P     
Sbjct: 98  SSGTVLSD---------------YVGSGPPKGTGLHRYVWLVYEQDRP-LKCDEPILSNR 141

Query: 159 LHDKMRNHIIAIGRKEF 175
             D      +A  RK++
Sbjct: 142 SGDHRGKFKVASFRKKY 158



>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
           Coli Involved In Copper Homeostasis
          Length = 488

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 29  LNSNGLPTYSPKISWQ---KVEGAQSYALELIDHDAQK 63
           L+ NG P  + +  W+   KVEG  S  L   +HDA K
Sbjct: 427 LSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPK 464



>pdb|1AYX|   Crystal Structure Of Glucoamylase From Saccharomycopsis Fibuligera
           At 1.7 Angstroms
          Length = 492

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 19/79 (24%), Positives = 34/79 (42%), Gaps = 15/79 (18%)

Query: 80  NVLEENASMMDKRIVQG----VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPM------- 128
           N L   AS ++  +       VN+     + +P    +  R  L+++ YIGP+       
Sbjct: 244 NTLSSTASTLESYLSGSDGGFVNTDVNHIVENPDLLQQNSRQGLDSATYIGPLLTHDIGE 303

Query: 129 ----PPNGDHHYLIQVYAL 143
               P + D+ Y++Q Y L
Sbjct: 304 SSSTPFDVDNEYVLQSYYL 322



>pdb|1IB5|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83y
          Length = 151

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 11/37 (29%), Positives = 23/37 (61%), Gaps = 3/37 (8%)

Query: 15  YLDAKFGGNAPKAFLNSNGL---PTYSPKISWQKVEG 48
           Y D    G+ P  F+++NGL   P  +P+++ ++++G
Sbjct: 83  YTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKG 119



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,107
Number of Sequences: 13198
Number of extensions: 44852
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 5
length of query: 183
length of database: 2,899,336
effective HSP length: 83
effective length of query: 100
effective length of database: 1,803,902
effective search space: 180390200
effective search space used: 180390200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)