BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644847|ref|NP_207017.1| hypothetical protein
[Helicobacter pylori 26695]
         (159 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QR2|A  Chain A, Human Quinone Reductase Type 2 >gi|5822...    27  1.4
pdb|2TMA|A  Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain...    24  7.1
pdb|1IM4|A  Chain A, Crystal Structure Of A Dinb Homolog (Db...    24  7.1
pdb|1HLV|A  Chain A, Crystal Structure Of Cenp-B(1-129) Comp...    24  7.1
pdb|1GPM|A  Chain A, Escherichia Coli Gmp Synthetase Complex...    24  7.1
pdb|1K1S|A  Chain A, Crystal Structure Of Dinb From Sulfolob...    24  7.1
pdb|1C1G|A  Chain A, Crystal Structure Of Tropomyosin At 7 A...    24  9.3
pdb|1G55|A  Chain A, Structure Of Human Dnmt2, An Enigmatic ...    24  9.3

>pdb|1QR2|A Chain A, Human Quinone Reductase Type 2
 pdb|1QR2|B Chain B, Human Quinone Reductase Type 2
 pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione
 pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione
          Length = 230

 Score = 26.6 bits (57), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 38  VYPTQEASNKF--FKSVAQGMELAPEIAQEDEEK 69
           ++P Q  +  F  FK +A  +  APEIA E+E K
Sbjct: 168 LWPLQHGTLHFCGFKVLAPQISFAPEIASEEERK 201



>pdb|2TMA|A Chain A, Tropomyosin
 pdb|2TMA|B Chain B, Tropomyosin
          Length = 284

 Score = 24.3 bits (51), Expect = 7.1
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 8   ESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAPEIAQEDE 67
           E+ +  L+ +I  + E+  R    L T L      E + K      +GM++    AQ+DE
Sbjct: 82  EADVASLNRRIQLVEEELDRAQERLATALQKL---EEAEKAADESERGMKVIESRAQKDE 138

Query: 68  EK 69
           EK
Sbjct: 139 EK 140



>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass
           Dna Polymerase Catalytic Fragment From Sulfolobus
           Solfataricus
          Length = 221

 Score = 24.3 bits (51), Expect = 7.1
 Identities = 21/64 (32%), Positives = 32/64 (49%), Gaps = 14/64 (21%)

Query: 6   RMESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAPEIAQE 65
           R+ + +N+ + KI+        V S+ E YL V      +NK   +   G+ELA +I QE
Sbjct: 92  RIMNLLNKHADKIE--------VASIDEAYLDV------TNKVEGNFENGIELARKIKQE 137

Query: 66  DEEK 69
             EK
Sbjct: 138 ILEK 141



>pdb|1HLV|A Chain A, Crystal Structure Of Cenp-B(1-129) Complexed With The
           Cenp- B Box Dna
          Length = 131

 Score = 24.3 bits (51), Expect = 7.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 82  ITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGIKPTKKE 125
           I + +++  L+K   E  +RFN+P   + T L N R I  ++++
Sbjct: 17  IQEVEENPDLRKG--EIARRFNIPPSTLSTILKNKRAILASERK 58



>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
          Length = 525

 Score = 24.3 bits (51), Expect = 7.1
 Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 3/61 (4%)

Query: 31  LLETYLSVYPTQEASNKFFKSVAQGMELAPEIAQEDEEKRLYVLQYLSHVDITKNKQDSQ 90
           LL+ ++S      A    F +VA   E  P     +EEKR Y +Q+  H ++T  +Q  +
Sbjct: 136 LLDVWMSHGDKVTAIPSDFITVAS-TESCPFAIMANEEKRFYGVQF--HPEVTHTRQGMR 192

Query: 91  L 91
           +
Sbjct: 193 M 193



>pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
 pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
           Polymerase From Sulfolobus Solfataricus
 pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
           Polymerase From Sulfolobus Solfataricus
          Length = 354

 Score = 24.3 bits (51), Expect = 7.1
 Identities = 21/64 (32%), Positives = 32/64 (49%), Gaps = 14/64 (21%)

Query: 6   RMESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAPEIAQE 65
           R+ + +N+ + KI+        V S+ E YL V      +NK   +   G+ELA +I QE
Sbjct: 87  RIMNLLNKHADKIE--------VASIDEAYLDV------TNKVEGNFENGIELARKIKQE 132

Query: 66  DEEK 69
             EK
Sbjct: 133 ILEK 136



>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
          Length = 284

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 8   ESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAPEIAQEDE 67
           E+ +  L+ +I    E+  R    L T L      E + K      +GM++    AQ+DE
Sbjct: 82  EADVASLNRRIQLFEEELDRAQERLATALQKL---EEAEKAADESERGMKVIESRAQKDE 138

Query: 68  EK 69
           EK
Sbjct: 139 EK 140



>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
           Methyltransferase Homologue
          Length = 343

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 26/109 (23%), Positives = 44/109 (39%), Gaps = 13/109 (11%)

Query: 38  VYPTQEASNKFFKSVAQGMELAPEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLK----- 92
           V PT   S  F K     +E    + Q  E+ ++  + Y S  ++++ +Q ++L      
Sbjct: 235 VQPTXRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENI-YKSLTNLSQEEQITKLLILKLR 293

Query: 93  -------KDCLEFIQRFNVPKPIIITALYNLRGIKPTKKEVAKQLQKLY 134
                   + L F   F  P+ I +   Y L G       VAK ++ LY
Sbjct: 294 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 342



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 802,177
Number of Sequences: 13198
Number of extensions: 28414
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 8
length of query: 159
length of database: 2,899,336
effective HSP length: 81
effective length of query: 78
effective length of database: 1,830,298
effective search space: 142763244
effective search space used: 142763244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)