BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644848|ref|NP_207018.1| synthesis of [Fe-S] cluster
(nifS) [Helicobacter pylori 26695]
(387 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ECX|B Chain B, Nifs-Like Protein >gi|7546479|pdb|1ECX|... 290 2e-79
pdb|1EG5|B Chain B, Nifs-Like Protein >gi|7546280|pdb|1EG5|... 279 4e-76
pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase 102 1e-22
pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH T... 98 2e-21
pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue 96 5e-21
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C... 60 4e-10
pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus... 33 0.042
pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotra... 33 0.042
pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotra... 33 0.042
pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus... 33 0.042
pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA 27 5.1
pdb|1YCS|B Chain B, P53-53bp2 Complex 26 8.7
>pdb|1ECX|B Chain B, Nifs-Like Protein
pdb|1ECX|A Chain A, Nifs-Like Protein
Length = 384
Score = 290 bits (741), Expect = 2e-79
Identities = 163/366 (44%), Positives = 219/366 (59%), Gaps = 6/366 (1%)
Query: 4 RIYLDNNATTRIDPKVKEIMDPFLRDHYGNPSSLHQFGTETHPAIAEALDKLYKGINARD 63
R+Y DNNATTR+D +V E M F R+ YGNP+S H G E + + +A +K+ K +
Sbjct: 2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 64 IDDVIITSCATESNNWVLKGVYFDECLKKGKNHIVTTVAEHPAVRSTCNFLESLGVEVTY 123
++ TSCATES NW+LK V E +K K I+TT EH AV T +L G +V Y
Sbjct: 62 -SEIFFTSCATESINWILKTVA--ETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKY 118
Query: 124 LPINEHGSITAEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKEKG--VLFHTDA 181
+P++ G + E++++ + E T LVS+M ANNE G I P+E++ I K+K L H DA
Sbjct: 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178
Query: 182 VQAIGKIPVDVLKANADFLSFSAHKFHGPKGIGGLYIRSGVGLTPLFHGGEHMNGRRSGT 241
VQ IGKIP + K D+ SFSAHKFHGPKG+G YIR GV + PL HGG G RSGT
Sbjct: 179 VQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGT 238
Query: 242 LNVPYIVGMGEAMKLAVEHLDYEKEVVGKLRDKLEEALLKIPDVMVVGDRIHRVPNTTLV 301
NVP IVG AM++AVE L + + KLR KL L+ + ++ I +PNT V
Sbjct: 239 QNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI-SLPNTLSV 297
Query: 302 SVRGIEGEAMLWDLNRSNIAASTGSACASEDLEANPVMVAIGASKELAHTAIRLSLSRFN 361
S I G + L+ I ST SAC S+D V+ A+G + +A AIR+SL ++N
Sbjct: 298 SFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYN 357
Query: 362 TEAEID 367
TE E+D
Sbjct: 358 TEEEVD 363
>pdb|1EG5|B Chain B, Nifs-Like Protein
pdb|1EG5|A Chain A, Nifs-Like Protein
Length = 384
Score = 279 bits (713), Expect = 4e-76
Identities = 160/366 (43%), Positives = 212/366 (57%), Gaps = 6/366 (1%)
Query: 4 RIYLDNNATTRIDPKVKEIMDPFLRDHYGNPSSLHQFGTETHPAIAEALDKLYKGINARD 63
R+Y DNNATTR+D +V E F R+ YGNP+S H G E + +A +K+ K +
Sbjct: 2 RVYFDNNATTRVDDRVLEEXIVFYREKYGNPNSAHGXGIEANLHXEKAREKVAKVLGVSP 61
Query: 64 IDDVIITSCATESNNWVLKGVYFDECLKKGKNHIVTTVAEHPAVRSTCNFLESLGVEVTY 123
++ TSCATES NW+LK V E +K K I+TT EH AV T +L G +V Y
Sbjct: 62 -SEIFFTSCATESINWILKTVA--ETFEKRKRTIITTPIEHKAVLETXKYLSXKGFKVKY 118
Query: 124 LPINEHGSITAEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKEKG--VLFHTDA 181
+P++ G + E++++ + E T LVS+ ANNE G I P+E++ I K+K L H DA
Sbjct: 119 VPVDSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178
Query: 182 VQAIGKIPVDVLKANADFLSFSAHKFHGPKGIGGLYIRSGVGLTPLFHGGEHMNGRRSGT 241
VQ IGKIP + K D+ SFSAHKFHGPKG+G YIR GV + PL HGG G RSGT
Sbjct: 179 VQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGT 238
Query: 242 LNVPYIVGMGEAMKLAVEHLDYEKEVVGKLRDKLEEALLKIPDVMVVGDRIHRVPNTTLV 301
NVP IVG A ++AVE L + KLR KL L + ++ I +PNT V
Sbjct: 239 QNVPGIVGAARAXEIAVEELSEAAKHXEKLRSKLVSGLXNLGAHIITPLEI-SLPNTLSV 297
Query: 302 SVRGIEGEAMLWDLNRSNIAASTGSACASEDLEANPVMVAIGASKELAHTAIRLSLSRFN 361
S I G + L+ I ST SAC S+D V+ A G + +A AIR+SL ++N
Sbjct: 298 SFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAXGVDRRIAQGAIRISLCKYN 357
Query: 362 TEAEID 367
TE E+D
Sbjct: 358 TEEEVD 363
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 102 bits (253), Expect = 1e-22
Identities = 95/392 (24%), Positives = 164/392 (41%), Gaps = 49/392 (12%)
Query: 6 YLDNNATTRIDPKVKEIMDPFLRDHYGNPS-SLHQFGTETHPAIAEALDKLYKGINARDI 64
YLD+ A+ + +V + F R Y +H + + + INAR
Sbjct: 28 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA 87
Query: 65 DDVIITSCATESNNWVLKGVYFDECLKKGKNHIVTTVAEHPAVRSTCNFLESLGVEVTYL 124
++++ TE N V + + ++ G N I++ + H + +G E+ +
Sbjct: 88 EELVFVRGTTEGINLVANS-WGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI 146
Query: 125 PINEHGSITAEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKEKGVLFHTDAVQA 184
P+N G++ E + EKT L+++ +N G P+ E+ + + G D QA
Sbjct: 147 PLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 206
Query: 185 IGKIPVDVLKANADFLSFSAHKFHGPKGIGGLYIRSG-VGLTPLFHGGEHMNGR------ 237
+ PVDV + DF FS HK +GP GIG LY++ + P + GG M
Sbjct: 207 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG 266
Query: 238 ----------RSGTLNVPYIVGMGEAMK----LAVEHL-DYEKEVVGKLRDKLEEALLKI 282
+GT N I+G+G A++ L + ++ +YE+ ++ +LE +
Sbjct: 267 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLE----SV 322
Query: 283 PDVMVVGDRIHRVPNTTLVSVRGIEGEAMLWD----LNRSNIAASTGSACASEDLEANPV 338
PD+ + G P L + G+ +D L+ IA TG CA P+
Sbjct: 323 PDLTLYG------PQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAM------PL 370
Query: 339 MVAIGASKELAHTAIRLSLSRFNTEAEIDKTI 370
M R SL+ +NT E+D+ +
Sbjct: 371 MAYYNVP-----AMCRASLAMYNTHEEVDRLV 397
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
Persulfide Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
Perselenide Intermediate (Residue Csz)
Length = 406
Score = 97.8 bits (242), Expect = 2e-21
Identities = 91/388 (23%), Positives = 163/388 (41%), Gaps = 41/388 (10%)
Query: 6 YLDNNATTRIDPKVKEIMDPFLRDHYGNPS-SLHQFGTETHPAIAEALDKLYKGINARDI 64
YLD+ A+ + +V + F R Y +H + + + INAR
Sbjct: 26 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA 85
Query: 65 DDVIITSCATESNNWVLKGVYFDECLKKGKNHIVTTVAEHPAVRSTCNFLESLGVEVTYL 124
++++ TE N V + + ++ G N I++ + H + +G E+ +
Sbjct: 86 EELVFVRGTTEGINLVANS-WGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI 144
Query: 125 PINEHGSITAEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKEKGVLFHTDAVQA 184
P+N G++ E + EKT L+++ +N G P+ E+ + + G D QA
Sbjct: 145 PLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 185 IGKIPVDVLKANADFLSFSAHKFHGPKGIGGLYIRSG-VGLTPLFHGGEHMNGR------ 237
+ PVDV + DF FS HK +GP GIG LY++ + P + GG M
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG 264
Query: 238 ----------RSGTLNVPYIVGMGEAMK----LAVEHL-DYEKEVVGKLRDKLEEALLKI 282
+GT N I+G+G A++ L + ++ +YE+ ++ +LE +
Sbjct: 265 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLE----SV 320
Query: 283 PDVMVVGDRIHRVPNTTLVSVRGIEGEAMLWDLNRSNIAASTGSACASEDLEANPVMVAI 342
PD+ + G P L + G+ +D+ + + G A + A P+M
Sbjct: 321 PDLTLYG------PQNRLGVIAFNLGKHHAYDV--GSFLDNYGIAVRTGHHXAMPLMAYY 372
Query: 343 GASKELAHTAIRLSLSRFNTEAEIDKTI 370
R SL+ +NT E+D+ +
Sbjct: 373 NVP-----AMCRASLAMYNTHEEVDRLV 395
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 96.3 bits (238), Expect = 5e-21
Identities = 93/392 (23%), Positives = 161/392 (40%), Gaps = 49/392 (12%)
Query: 6 YLDNNATTRIDPKVKEIMDPFLRDHYGNP-SSLHQFGTETHPAIAEALDKLYKGINARDI 64
YLD+ A+ + +V + F R Y + H + + + INAR
Sbjct: 26 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHAGAHTLSAQATEKMENVRKRASLFINARSA 85
Query: 65 DDVIITSCATESNNWVLKGVYFDECLKKGKNHIVTTVAEHPAVRSTCNFLESLGVEVTYL 124
++++ TE N V + + ++ G N I++ + H + +G E+ +
Sbjct: 86 EELVFVRGTTEGINLVANS-WGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI 144
Query: 125 PINEHGSITAEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKEKGVLFHTDAVQA 184
P+N G++ E + T L+++ +N G P+ E+ + + G D QA
Sbjct: 145 PLNPDGTLQLETLPTLFDAATRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 185 IGKIPVDVLKANADFLSFSAHKFHGPKGIGGLYIRSG-VGLTPLFHGGEHMNGR------ 237
+ PVDV + DF FS HK +GP GIG LY++ + P + GG M
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG 264
Query: 238 ----------RSGTLNVPYIVGMGEAMK----LAVEHL-DYEKEVVGKLRDKLEEALLKI 282
+GT N I+G+G A++ L + ++ +YE+ ++ +LE +
Sbjct: 265 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLE----SV 320
Query: 283 PDVMVVGDRIHRVPNTTLVSVRGIEGEAMLWD----LNRSNIAASTGSACASEDLEANPV 338
PD+ + G P L + G +D L+ IA TG CA P+
Sbjct: 321 PDLTLYG------PQARLGVIAFNLGAHHAYDVGSFLDNYGIAVRTGHHCAM------PL 368
Query: 339 MVAIGASKELAHTAIRLSLSRFNTEAEIDKTI 370
M R SL+ +NT E+D+ +
Sbjct: 369 MAYYNVP-----AMCRASLAMYNTHEEVDRLV 395
>pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
Length = 390
Score = 60.1 bits (144), Expect = 4e-10
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 48 IAEALDKLYKGINARDIDDVIITSCATESNNWVLKGVYFDECLKKGKNHIVTTVAEHPAV 107
IA+ L + N D + + IT T + VL G+ + + + I+ T EHP +
Sbjct: 61 IAQLRQALAETFNV-DPNTITITDNVTTGCDIVLWGLDWHQ-----GDEILLTDCEHPGI 114
Query: 108 RSTCNFLES-LGVEVTYLPINE--HGSITAEQVKEAITEKTALVSVMWANNETGLIFPIE 164
+ + + G+ + P+ + A + + KT LV + TG + P+
Sbjct: 115 IAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLA 174
Query: 165 EIGAICKEKG----VLFHTDAVQAIGKIPVDVLKANADFLSFSAHK-FHGPKGIGGLYI 218
EI A+C+ V D Q+ G +P+D + D+ +F+ HK F GP G+GGLYI
Sbjct: 175 EIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYI 233
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 33.5 bits (75), Expect = 0.042
Identities = 22/60 (36%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Query: 113 FLESLGVEVTYLPINEHGSIT-AEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICK 171
F + VEV LP E G + E+V+ AIT +T + V NN TG ++P E + A+ +
Sbjct: 134 FAGGVVVEVETLP--EEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALAR 191
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
Length = 385
Score = 33.5 bits (75), Expect = 0.042
Identities = 22/60 (36%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Query: 113 FLESLGVEVTYLPINEHGSIT-AEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICK 171
F + VEV LP E G + E+V+ AIT +T + V NN TG ++P E + A+ +
Sbjct: 134 FAGGVVVEVETLP--EEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALAR 191
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
Length = 385
Score = 33.5 bits (75), Expect = 0.042
Identities = 22/60 (36%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Query: 113 FLESLGVEVTYLPINEHGSIT-AEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICK 171
F + VEV LP E G + E+V+ AIT +T + V NN TG ++P E + A+ +
Sbjct: 134 FAGGVVVEVETLP--EEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALAR 191
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 33.5 bits (75), Expect = 0.042
Identities = 22/60 (36%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Query: 113 FLESLGVEVTYLPINEHGSIT-AEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICK 171
F + VEV LP E G + E+V+ AIT +T + V NN TG ++P E + A+ +
Sbjct: 134 FAGGVVVEVETLP--EEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALAR 191
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 26.6 bits (57), Expect = 5.1
Identities = 15/42 (35%), Positives = 21/42 (49%)
Query: 37 LHQFGTETHPAIAEALDKLYKGINARDIDDVIITSCATESNN 78
LH +E H I E L K +NA+D+ + ATE N+
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 25.8 bits (55), Expect = 8.7
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 19 VKEIMDPFLRDHYGNPSSLHQFGTETHPAIAEALDKLYKGINARDIDDVIITSCATESNN 78
+ E+ DP L + G ++LH H I + L + +NA D D CA NN
Sbjct: 57 IYEVDDPSLPNDEGI-TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,227,784
Number of Sequences: 13198
Number of extensions: 94221
Number of successful extensions: 310
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 12
length of query: 387
length of database: 2,899,336
effective HSP length: 90
effective length of query: 297
effective length of database: 1,711,516
effective search space: 508320252
effective search space used: 508320252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)